data_7OWZ # _model_server_result.job_id NN-1up8JK-tPzy8U7GzEWg _model_server_result.datetime_utc '2024-11-25 22:29:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7owz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 7OWZ # _exptl.entry_id 7OWZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 277.279 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OWZ _cell.length_a 199.5 _cell.length_b 199.5 _cell.length_c 90.586 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OWZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall 'P 62 2 (x,y,z+1/3)' _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 352 A CYS 351 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc2 A SG CYS 354 A CYS 353 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc3 A SG CYS 357 A CYS 356 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc4 A ND1 HIS 383 A HIS 382 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc5 B SG CYS 309 C CYS 317 1_555 F ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc6 B SG CYS 311 C CYS 319 1_555 F ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc7 B SG CYS 314 C CYS 322 1_555 F ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc8 B ND1 HIS 340 C HIS 348 1_555 F ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? # _chem_comp.formula 'C12 H15 N5 O3' _chem_comp.formula_weight 277.279 _chem_comp.id QEI _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms queuine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 QEI sing 325 n n C1 C3 QEI sing 326 n n C1 N1 QEI sing 327 n n C2 C4 QEI sing 328 n n C2 O1 QEI sing 329 n n C3 C5 QEI doub 330 n n C4 C5 QEI sing 331 n n C4 O2 QEI sing 332 n n C6 N1 QEI sing 333 n n C6 C7 QEI sing 334 n n C9 C10 QEI doub 335 n y C9 C11 QEI sing 336 n n C9 C7 QEI sing 337 n y C10 N2 QEI sing 338 n y C10 N3 QEI sing 339 n n C11 N4 QEI sing 340 n n C11 O3 QEI doub 341 n n C7 C8 QEI doub 342 n y C8 N2 QEI sing 343 n y N3 C12 QEI doub 344 n n C12 N5 QEI sing 345 n n C12 N4 QEI sing 346 n n C1 H1 QEI sing 347 n n C2 H2 QEI sing 348 n n C3 H3 QEI sing 349 n n C4 H4 QEI sing 350 n n C5 H5 QEI sing 351 n n C6 H6 QEI sing 352 n n C6 H6A QEI sing 353 n n O1 HO1 QEI sing 354 n n O2 HO2 QEI sing 355 n n N1 HN1 QEI sing 356 n n C8 H8 QEI sing 357 n n N2 HN2 QEI sing 358 n n N5 HN5 QEI sing 359 n n N5 HN5A QEI sing 360 n n N4 HN4 QEI sing 361 n n # _atom_sites.entry_id 7OWZ _atom_sites.fract_transf_matrix[1][1] 0.005013 _atom_sites.fract_transf_matrix[1][2] 0.002894 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TEW A 1 501 2 TEW TEW . D 3 TEW A 1 502 3 TEW TEW . E 4 ZN A 1 503 2 ZN ZN . F 4 ZN C 1 501 1 ZN ZN . G 5 QEI C 1 502 2 QEI QUE . H 6 2I2 C 1 503 1 2I2 POP . I 7 HOH A 1 601 28 HOH HOH . I 7 HOH A 2 602 14 HOH HOH . I 7 HOH A 3 603 53 HOH HOH . I 7 HOH A 4 604 29 HOH HOH . I 7 HOH A 5 605 36 HOH HOH . I 7 HOH A 6 606 6 HOH HOH . I 7 HOH A 7 607 37 HOH HOH . I 7 HOH A 8 608 13 HOH HOH . I 7 HOH A 9 609 40 HOH HOH . I 7 HOH A 10 610 47 HOH HOH . I 7 HOH A 11 611 32 HOH HOH . I 7 HOH A 12 612 35 HOH HOH . I 7 HOH A 13 613 9 HOH HOH . I 7 HOH A 14 614 1 HOH HOH . J 7 HOH C 1 601 52 HOH HOH . J 7 HOH C 2 602 27 HOH HOH . J 7 HOH C 3 603 31 HOH HOH . J 7 HOH C 4 604 55 HOH HOH . J 7 HOH C 5 605 12 HOH HOH . J 7 HOH C 6 606 54 HOH HOH . J 7 HOH C 7 607 17 HOH HOH . J 7 HOH C 8 608 44 HOH HOH . J 7 HOH C 9 609 16 HOH HOH . J 7 HOH C 10 610 21 HOH HOH . J 7 HOH C 11 611 22 HOH HOH . J 7 HOH C 12 612 19 HOH HOH . J 7 HOH C 13 613 4 HOH HOH . J 7 HOH C 14 614 50 HOH HOH . J 7 HOH C 15 615 11 HOH HOH . J 7 HOH C 16 616 20 HOH HOH . J 7 HOH C 17 617 45 HOH HOH . J 7 HOH C 18 618 24 HOH HOH . J 7 HOH C 19 619 3 HOH HOH . J 7 HOH C 20 620 23 HOH HOH . J 7 HOH C 21 621 26 HOH HOH . J 7 HOH C 22 622 38 HOH HOH . J 7 HOH C 23 623 49 HOH HOH . J 7 HOH C 24 624 39 HOH HOH . J 7 HOH C 25 625 15 HOH HOH . J 7 HOH C 26 626 30 HOH HOH . J 7 HOH C 27 627 25 HOH HOH . J 7 HOH C 28 628 34 HOH HOH . J 7 HOH C 29 629 48 HOH HOH . J 7 HOH C 30 630 8 HOH HOH . J 7 HOH C 31 631 42 HOH HOH . J 7 HOH C 32 632 41 HOH HOH . J 7 HOH C 33 633 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 QEI . . . G 5 25.911 66.076 -6.704 0.85 61.48 ? C1 QEI 502 C 1 HETATM 2 C C2 QEI . . . G 5 26.367 66.852 -7.977 0.85 61.48 ? C2 QEI 502 C 1 HETATM 3 C C3 QEI . . . G 5 24.419 66.284 -6.713 0.85 61.48 ? C3 QEI 502 C 1 HETATM 4 C C4 QEI . . . G 5 25.103 67.472 -8.614 0.85 61.48 ? C4 QEI 502 C 1 HETATM 5 C C5 QEI . . . G 5 23.984 66.851 -7.845 0.85 61.48 ? C5 QEI 502 C 1 HETATM 6 C C6 QEI . . . G 5 25.819 66.263 -4.27 0.85 61.48 ? C6 QEI 502 C 1 HETATM 7 C C9 QEI . . . G 5 25.261 63.794 -3.641 0.85 61.48 ? C9 QEI 502 C 1 HETATM 8 C C10 QEI . . . G 5 25.99 62.655 -3.392 0.85 61.48 ? C10 QEI 502 C 1 HETATM 9 C C11 QEI . . . G 5 23.824 63.696 -3.555 0.85 61.48 ? C11 QEI 502 C 1 HETATM 10 O O1 QEI . . . G 5 26.983 65.96 -8.932 0.85 61.48 ? O1 QEI 502 C 1 HETATM 11 O O2 QEI . . . G 5 24.987 67.124 -9.985 0.85 61.48 ? O2 QEI 502 C 1 HETATM 12 N N1 QEI . . . G 5 26.524 66.621 -5.498 0.85 61.48 ? N1 QEI 502 C 1 HETATM 13 C C7 QEI . . . G 5 26.167 64.85 -3.938 0.85 61.48 ? C7 QEI 502 C 1 HETATM 14 C C8 QEI . . . G 5 27.436 64.29 -3.855 0.85 61.48 ? C8 QEI 502 C 1 HETATM 15 N N2 QEI . . . G 5 27.312 62.963 -3.524 0.85 61.48 ? N2 QEI 502 C 1 HETATM 16 N N3 QEI . . . G 5 25.534 61.424 -3.07 0.85 61.48 ? N3 QEI 502 C 1 HETATM 17 C C12 QEI . . . G 5 24.234 61.352 -2.996 0.85 61.48 ? C12 QEI 502 C 1 HETATM 18 N N5 QEI . . . G 5 23.643 60.178 -2.682 0.85 61.48 ? N5 QEI 502 C 1 HETATM 19 N N4 QEI . . . G 5 23.393 62.423 -3.223 0.85 61.48 ? N4 QEI 502 C 1 HETATM 20 O O3 QEI . . . G 5 23.042 64.622 -3.748 0.85 61.48 ? O3 QEI 502 C 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #