data_7OXJ # _model_server_result.job_id lIx0hT9_PSnSFL8f6kMqcg _model_server_result.datetime_utc '2024-10-25 20:36:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oxj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 7OXJ # _exptl.entry_id 7OXJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OXJ _cell.length_a 49.282 _cell.length_b 49.282 _cell.length_c 130.7 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OXJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 97 A GLU 97 1_555 D NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc2 D NI NI . A NI 201 1_555 J O HOH . A HOH 308 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc3 D NI NI . A NI 201 1_555 J O HOH . A HOH 311 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc4 D NI NI . A NI 201 1_555 J O HOH . A HOH 315 5_664 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc5 D NI NI . A NI 201 1_555 J O HOH . A HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc6 D NI NI . A NI 201 1_555 J O HOH . A HOH 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc7 H MG MG . A MG 205 1_555 J O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc8 H MG MG . A MG 205 1_555 J O HOH . A HOH 306 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc9 H MG MG . A MG 205 1_555 J O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc10 H MG MG . A MG 205 1_555 J O HOH . A HOH 316 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc11 H MG MG . A MG 205 1_555 J O HOH . A HOH 333 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7OXJ _atom_sites.fract_transf_matrix[1][1] 0.020291 _atom_sites.fract_transf_matrix[1][2] 0.011715 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NI A 1 201 1 NI NI . E 5 PGE A 1 202 2 PGE 333 . F 6 PG4 A 1 203 3 PG4 PG4 . G 5 PGE A 1 204 301 PGE PGE . H 7 MG A 1 205 1 MG MG . I 8 CL A 1 206 1 CL CL . J 9 HOH A 1 301 84 HOH HOH . J 9 HOH A 2 302 52 HOH HOH . J 9 HOH A 3 303 46 HOH HOH . J 9 HOH A 4 304 47 HOH HOH . J 9 HOH A 5 305 38 HOH HOH . J 9 HOH A 6 306 99 HOH HOH . J 9 HOH A 7 307 54 HOH HOH . J 9 HOH A 8 308 3 HOH HOH . J 9 HOH A 9 309 35 HOH HOH . J 9 HOH A 10 310 72 HOH HOH . J 9 HOH A 11 311 5 HOH HOH . J 9 HOH A 12 312 17 HOH HOH . J 9 HOH A 13 313 33 HOH HOH . J 9 HOH A 14 314 29 HOH HOH . J 9 HOH A 15 315 4 HOH HOH . J 9 HOH A 16 316 97 HOH HOH . J 9 HOH A 17 317 13 HOH HOH . J 9 HOH A 18 318 11 HOH HOH . J 9 HOH A 19 319 66 HOH HOH . J 9 HOH A 20 320 1 HOH HOH . J 9 HOH A 21 321 8 HOH HOH . J 9 HOH A 22 322 58 HOH HOH . J 9 HOH A 23 323 74 HOH HOH . J 9 HOH A 24 324 15 HOH HOH . J 9 HOH A 25 325 41 HOH HOH . J 9 HOH A 26 326 9 HOH HOH . J 9 HOH A 27 327 10 HOH HOH . J 9 HOH A 28 328 21 HOH HOH . J 9 HOH A 29 329 14 HOH HOH . J 9 HOH A 30 330 16 HOH HOH . J 9 HOH A 31 331 70 HOH HOH . J 9 HOH A 32 332 31 HOH HOH . J 9 HOH A 33 333 98 HOH HOH . J 9 HOH A 34 334 59 HOH HOH . J 9 HOH A 35 335 53 HOH HOH . J 9 HOH A 36 336 100 HOH HOH . J 9 HOH A 37 337 12 HOH HOH . J 9 HOH A 38 338 37 HOH HOH . J 9 HOH A 39 339 22 HOH HOH . J 9 HOH A 40 340 24 HOH HOH . J 9 HOH A 41 341 26 HOH HOH . J 9 HOH A 42 342 27 HOH HOH . J 9 HOH A 43 343 83 HOH HOH . J 9 HOH A 44 344 19 HOH HOH . J 9 HOH A 45 345 2 HOH HOH . J 9 HOH A 46 346 50 HOH HOH . J 9 HOH A 47 347 23 HOH HOH . J 9 HOH A 48 348 73 HOH HOH . J 9 HOH A 49 349 34 HOH HOH . J 9 HOH A 50 350 67 HOH HOH . J 9 HOH A 51 351 25 HOH HOH . J 9 HOH A 52 352 64 HOH HOH . J 9 HOH A 53 353 7 HOH HOH . J 9 HOH A 54 354 75 HOH HOH . J 9 HOH A 55 355 55 HOH HOH . J 9 HOH A 56 356 39 HOH HOH . J 9 HOH A 57 357 30 HOH HOH . J 9 HOH A 58 358 43 HOH HOH . J 9 HOH A 59 359 20 HOH HOH . J 9 HOH A 60 360 63 HOH HOH . J 9 HOH A 61 361 49 HOH HOH . J 9 HOH A 62 362 89 HOH HOH . J 9 HOH A 63 363 18 HOH HOH . J 9 HOH A 64 364 61 HOH HOH . J 9 HOH A 65 365 65 HOH HOH . J 9 HOH A 66 366 42 HOH HOH . J 9 HOH A 67 367 80 HOH HOH . J 9 HOH A 68 368 91 HOH HOH . J 9 HOH A 69 369 62 HOH HOH . J 9 HOH A 70 370 77 HOH HOH . J 9 HOH A 71 371 60 HOH HOH . J 9 HOH A 72 372 57 HOH HOH . J 9 HOH A 73 373 48 HOH HOH . J 9 HOH A 74 374 69 HOH HOH . J 9 HOH A 75 375 28 HOH HOH . J 9 HOH A 76 376 82 HOH HOH . J 9 HOH A 77 377 96 HOH HOH . J 9 HOH A 78 378 78 HOH HOH . J 9 HOH A 79 379 79 HOH HOH . J 9 HOH A 80 380 81 HOH HOH . J 9 HOH A 81 381 45 HOH HOH . J 9 HOH A 82 382 44 HOH HOH . J 9 HOH A 83 383 87 HOH HOH . J 9 HOH A 84 384 95 HOH HOH . J 9 HOH A 85 385 88 HOH HOH . J 9 HOH A 86 386 90 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -11.688 _atom_site.Cartn_y 9.06 _atom_site.Cartn_z -28.009 _atom_site.occupancy 0.6 _atom_site.B_iso_or_equiv 41.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #