data_7OXL
#
_model_server_result.job_id            YjLFc4s92d39ZzbjqUpGtw 
_model_server_result.datetime_utc      '2024-11-28 04:18:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7oxl 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
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_entry.id    7OXL 
#
_exptl.entry_id    7OXL 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7OXL 
_cell.length_a            190.919 
_cell.length_b            190.919 
_cell.length_c            43.574 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 7OXL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3 2 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_558 -x,-x+y,-z+3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 130.722 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 102 A CYS 102 1_555 A SG CYS 325 A CYS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 187 A CYS 187 1_555 A SG CYS 373 A CYS 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 362 n n 
C1 H11 MPD sing 363 n n 
C1 H12 MPD sing 364 n n 
C1 H13 MPD sing 365 n n 
C2 O2 MPD sing 366 n n 
C2 CM MPD sing 367 n n 
C2 C3 MPD sing 368 n n 
O2 HO2 MPD sing 369 n n 
CM HM1 MPD sing 370 n n 
CM HM2 MPD sing 371 n n 
CM HM3 MPD sing 372 n n 
C3 C4 MPD sing 373 n n 
C3 H31 MPD sing 374 n n 
C3 H32 MPD sing 375 n n 
C4 O4 MPD sing 376 n n 
C4 C5 MPD sing 377 n n 
C4 H4 MPD sing 378 n n 
O4 HO4 MPD sing 379 n n 
C5 H51 MPD sing 380 n n 
C5 H52 MPD sing 381 n n 
C5 H53 MPD sing 382 n n 
#
_atom_sites.entry_id                     7OXL 
_atom_sites.fract_transf_matrix[1][1]    0.005238 
_atom_sites.fract_transf_matrix[1][2]    0.003024 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006048 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022949 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 6YU A 1 501 501 6YU 6YU . 
C 3 CL A 1 502 1 CL CL . 
D 4 MPD A 1 503 2 MPD MPD . 
E 3 CL A 1 504 3 CL CL . 
F 5 HOH A 1 601 14 HOH HOH . 
F 5 HOH A 2 602 68 HOH HOH . 
F 5 HOH A 3 603 10 HOH HOH . 
F 5 HOH A 4 604 85 HOH HOH . 
F 5 HOH A 5 605 91 HOH HOH . 
F 5 HOH A 6 606 66 HOH HOH . 
F 5 HOH A 7 607 26 HOH HOH . 
F 5 HOH A 8 608 11 HOH HOH . 
F 5 HOH A 9 609 78 HOH HOH . 
F 5 HOH A 10 610 12 HOH HOH . 
F 5 HOH A 11 611 25 HOH HOH . 
F 5 HOH A 12 612 92 HOH HOH . 
F 5 HOH A 13 613 67 HOH HOH . 
F 5 HOH A 14 614 40 HOH HOH . 
F 5 HOH A 15 615 15 HOH HOH . 
F 5 HOH A 16 616 97 HOH HOH . 
F 5 HOH A 17 617 35 HOH HOH . 
F 5 HOH A 18 618 21 HOH HOH . 
F 5 HOH A 19 619 13 HOH HOH . 
F 5 HOH A 20 620 42 HOH HOH . 
F 5 HOH A 21 621 24 HOH HOH . 
F 5 HOH A 22 622 29 HOH HOH . 
F 5 HOH A 23 623 54 HOH HOH . 
F 5 HOH A 24 624 58 HOH HOH . 
F 5 HOH A 25 625 88 HOH HOH . 
F 5 HOH A 26 626 47 HOH HOH . 
F 5 HOH A 27 627 34 HOH HOH . 
F 5 HOH A 28 628 19 HOH HOH . 
F 5 HOH A 29 629 51 HOH HOH . 
F 5 HOH A 30 630 7 HOH HOH . 
F 5 HOH A 31 631 98 HOH HOH . 
F 5 HOH A 32 632 65 HOH HOH . 
F 5 HOH A 33 633 89 HOH HOH . 
F 5 HOH A 34 634 8 HOH HOH . 
F 5 HOH A 35 635 31 HOH HOH . 
F 5 HOH A 36 636 9 HOH HOH . 
F 5 HOH A 37 637 49 HOH HOH . 
F 5 HOH A 38 638 36 HOH HOH . 
F 5 HOH A 39 639 17 HOH HOH . 
F 5 HOH A 40 640 27 HOH HOH . 
F 5 HOH A 41 641 30 HOH HOH . 
F 5 HOH A 42 642 63 HOH HOH . 
F 5 HOH A 43 643 45 HOH HOH . 
F 5 HOH A 44 644 53 HOH HOH . 
F 5 HOH A 45 645 96 HOH HOH . 
F 5 HOH A 46 646 60 HOH HOH . 
F 5 HOH A 47 647 55 HOH HOH . 
F 5 HOH A 48 648 95 HOH HOH . 
F 5 HOH A 49 649 16 HOH HOH . 
F 5 HOH A 50 650 93 HOH HOH . 
F 5 HOH A 51 651 70 HOH HOH . 
F 5 HOH A 52 652 73 HOH HOH . 
F 5 HOH A 53 653 83 HOH HOH . 
F 5 HOH A 54 654 80 HOH HOH . 
F 5 HOH A 55 655 79 HOH HOH . 
F 5 HOH A 56 656 72 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . D 4 -27.476 105.873 49.079 1 126.9 ? C1 MPD 503 A 1 
HETATM 2 C C2 MPD . . . D 4 -26.421 104.995 49.743 1 120.65 ? C2 MPD 503 A 1 
HETATM 3 O O2 MPD . . . D 4 -27.123 104.087 50.611 1 94.66 ? O2 MPD 503 A 1 
HETATM 4 C CM MPD . . . D 4 -25.663 104.143 48.73 1 115.45 ? CM MPD 503 A 1 
HETATM 5 C C3 MPD . . . D 4 -25.453 105.813 50.612 1 115.82 ? C3 MPD 503 A 1 
HETATM 6 C C4 MPD . . . D 4 -26.061 106.694 51.703 1 117.97 ? C4 MPD 503 A 1 
HETATM 7 O O4 MPD . . . D 4 -26.957 105.969 52.554 1 87.32 ? O4 MPD 503 A 1 
HETATM 8 C C5 MPD . . . D 4 -25.025 107.381 52.552 1 114.68 ? C5 MPD 503 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#