data_7OXN # _model_server_result.job_id Jl8scKUXQRsoYXATzn4sag _model_server_result.datetime_utc '2024-10-10 08:23:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oxn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 7OXN # _exptl.entry_id 7OXN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.955 _cell.angle_gamma 90 _cell.entry_id 7OXN _cell.length_a 80.831 _cell.length_b 47.494 _cell.length_c 124.427 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OXN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 95 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 A SG CYS 143 H CYS 143 1_555 A SG CYS 199 H CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf3 B SG CYS 23 K CYS 23 1_555 B SG CYS 88 K CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf4 B SG CYS 134 K CYS 134 1_555 B SG CYS 194 K CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale1 C C ALA 2 A ALA 2 1_555 C N SMC 3 A SMC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 C C SMC 3 A SMC 3 1_555 C N PHE 4 A PHE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale3 C CS SMC 3 A SMC 3 1_555 C SG CYS 12 A CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.619 ? metalc ? metalc1 B OD1 ASP 185 K ASP 185 1_555 E ZN ZN . A ZN 101 4_454 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc2 B NE2 HIS 189 K HIS 189 1_555 E ZN ZN . A ZN 101 4_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc3 C OE2 GLU 11 A GLU 11 1_555 E ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc4 C ND1 HIS 14 A HIS 14 1_555 E ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7OXN _atom_sites.fract_transf_matrix[1][1] 0.012371 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000206 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO H 1 301 301 EDO EDO . E 5 ZN A 1 101 1 ZN ZN . F 6 HOH H 1 401 116 HOH HOH . F 6 HOH H 2 402 31 HOH HOH . F 6 HOH H 3 403 60 HOH HOH . F 6 HOH H 4 404 104 HOH HOH . F 6 HOH H 5 405 66 HOH HOH . F 6 HOH H 6 406 114 HOH HOH . F 6 HOH H 7 407 120 HOH HOH . F 6 HOH H 8 408 89 HOH HOH . F 6 HOH H 9 409 62 HOH HOH . F 6 HOH H 10 410 59 HOH HOH . F 6 HOH H 11 411 27 HOH HOH . F 6 HOH H 12 412 98 HOH HOH . F 6 HOH H 13 413 58 HOH HOH . F 6 HOH H 14 414 102 HOH HOH . F 6 HOH H 15 415 112 HOH HOH . F 6 HOH H 16 416 40 HOH HOH . F 6 HOH H 17 417 61 HOH HOH . F 6 HOH H 18 418 119 HOH HOH . F 6 HOH H 19 419 9 HOH HOH . F 6 HOH H 20 420 85 HOH HOH . F 6 HOH H 21 421 17 HOH HOH . F 6 HOH H 22 422 88 HOH HOH . F 6 HOH H 23 423 123 HOH HOH . F 6 HOH H 24 424 19 HOH HOH . F 6 HOH H 25 425 2 HOH HOH . F 6 HOH H 26 426 38 HOH HOH . F 6 HOH H 27 427 56 HOH HOH . F 6 HOH H 28 428 15 HOH HOH . F 6 HOH H 29 429 11 HOH HOH . F 6 HOH H 30 430 65 HOH HOH . F 6 HOH H 31 431 91 HOH HOH . F 6 HOH H 32 432 77 HOH HOH . F 6 HOH H 33 433 95 HOH HOH . F 6 HOH H 34 434 103 HOH HOH . F 6 HOH H 35 435 20 HOH HOH . F 6 HOH H 36 436 70 HOH HOH . F 6 HOH H 37 437 43 HOH HOH . F 6 HOH H 38 438 30 HOH HOH . F 6 HOH H 39 439 6 HOH HOH . F 6 HOH H 40 440 113 HOH HOH . F 6 HOH H 41 441 73 HOH HOH . F 6 HOH H 42 442 28 HOH HOH . F 6 HOH H 43 443 35 HOH HOH . F 6 HOH H 44 444 99 HOH HOH . F 6 HOH H 45 445 39 HOH HOH . F 6 HOH H 46 446 111 HOH HOH . F 6 HOH H 47 447 4 HOH HOH . F 6 HOH H 48 448 10 HOH HOH . F 6 HOH H 49 449 49 HOH HOH . F 6 HOH H 50 450 124 HOH HOH . F 6 HOH H 51 451 68 HOH HOH . F 6 HOH H 52 452 125 HOH HOH . G 6 HOH K 1 301 96 HOH HOH . G 6 HOH K 2 302 83 HOH HOH . G 6 HOH K 3 303 42 HOH HOH . G 6 HOH K 4 304 82 HOH HOH . G 6 HOH K 5 305 54 HOH HOH . G 6 HOH K 6 306 72 HOH HOH . G 6 HOH K 7 307 37 HOH HOH . G 6 HOH K 8 308 23 HOH HOH . G 6 HOH K 9 309 109 HOH HOH . G 6 HOH K 10 310 24 HOH HOH . G 6 HOH K 11 311 69 HOH HOH . G 6 HOH K 12 312 76 HOH HOH . G 6 HOH K 13 313 63 HOH HOH . G 6 HOH K 14 314 8 HOH HOH . G 6 HOH K 15 315 78 HOH HOH . G 6 HOH K 16 316 33 HOH HOH . G 6 HOH K 17 317 64 HOH HOH . G 6 HOH K 18 318 93 HOH HOH . G 6 HOH K 19 319 79 HOH HOH . G 6 HOH K 20 320 36 HOH HOH . G 6 HOH K 21 321 5 HOH HOH . G 6 HOH K 22 322 21 HOH HOH . G 6 HOH K 23 323 12 HOH HOH . G 6 HOH K 24 324 101 HOH HOH . G 6 HOH K 25 325 75 HOH HOH . G 6 HOH K 26 326 18 HOH HOH . G 6 HOH K 27 327 44 HOH HOH . G 6 HOH K 28 328 121 HOH HOH . G 6 HOH K 29 329 22 HOH HOH . G 6 HOH K 30 330 81 HOH HOH . G 6 HOH K 31 331 106 HOH HOH . G 6 HOH K 32 332 53 HOH HOH . G 6 HOH K 33 333 47 HOH HOH . G 6 HOH K 34 334 97 HOH HOH . G 6 HOH K 35 335 108 HOH HOH . G 6 HOH K 36 336 34 HOH HOH . G 6 HOH K 37 337 107 HOH HOH . G 6 HOH K 38 338 46 HOH HOH . G 6 HOH K 39 339 74 HOH HOH . G 6 HOH K 40 340 52 HOH HOH . G 6 HOH K 41 341 71 HOH HOH . G 6 HOH K 42 342 105 HOH HOH . G 6 HOH K 43 343 25 HOH HOH . G 6 HOH K 44 344 16 HOH HOH . G 6 HOH K 45 345 100 HOH HOH . G 6 HOH K 46 346 3 HOH HOH . G 6 HOH K 47 347 29 HOH HOH . G 6 HOH K 48 348 45 HOH HOH . G 6 HOH K 49 349 26 HOH HOH . G 6 HOH K 50 350 48 HOH HOH . G 6 HOH K 51 351 87 HOH HOH . G 6 HOH K 52 352 80 HOH HOH . G 6 HOH K 53 353 14 HOH HOH . G 6 HOH K 54 354 57 HOH HOH . G 6 HOH K 55 355 94 HOH HOH . G 6 HOH K 56 356 84 HOH HOH . G 6 HOH K 57 357 13 HOH HOH . G 6 HOH K 58 358 51 HOH HOH . G 6 HOH K 59 359 1 HOH HOH . G 6 HOH K 60 360 41 HOH HOH . G 6 HOH K 61 361 7 HOH HOH . G 6 HOH K 62 362 117 HOH HOH . G 6 HOH K 63 363 110 HOH HOH . G 6 HOH K 64 364 92 HOH HOH . G 6 HOH K 65 365 118 HOH HOH . G 6 HOH K 66 366 67 HOH HOH . G 6 HOH K 67 367 32 HOH HOH . G 6 HOH K 68 368 115 HOH HOH . G 6 HOH K 69 369 90 HOH HOH . G 6 HOH K 70 370 86 HOH HOH . H 6 HOH A 1 201 55 HOH HOH . H 6 HOH A 2 202 50 HOH HOH . H 6 HOH A 3 203 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 -5.689 18.075 -54.972 0 30 0 C1 EDO 301 H 1 HETATM 2 O O1 EDO . . . D 4 -4.908 18.824 -55.878 0 30 0 O1 EDO 301 H 1 HETATM 3 C C2 EDO . . . D 4 -6.004 16.708 -55.455 0 30 0 C2 EDO 301 H 1 HETATM 4 O O2 EDO . . . D 4 -5.007 15.763 -55.14 0 30 0 O2 EDO 301 H 1 HETATM 5 H H11 EDO . . . D 4 -6.537 18.543 -54.823 0 30 0 H11 EDO 301 H 1 HETATM 6 H H12 EDO . . . D 4 -5.2 17.989 -54.127 0 30 0 H12 EDO 301 H 1 HETATM 7 H HO1 EDO . . . D 4 -4.76 19.591 -55.553 0 30 0 HO1 EDO 301 H 1 HETATM 8 H H21 EDO . . . D 4 -6.1 16.728 -56.43 0 30 0 H21 EDO 301 H 1 HETATM 9 H H22 EDO . . . D 4 -6.841 16.409 -55.043 0 30 0 H22 EDO 301 H 1 HETATM 10 H HO2 EDO . . . D 4 -4.382 16.146 -54.718 0 30 0 HO2 EDO 301 H 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #