data_7OZ7 # _model_server_result.job_id rUZvbNzpT_AhfJw_iAE9OA _model_server_result.datetime_utc '2024-12-13 00:04:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oz7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":902}' # _entry.id 7OZ7 # _exptl.entry_id 7OZ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.11 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'trimethylamine oxide' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OZ7 _cell.length_a 149.422 _cell.length_b 149.422 _cell.length_c 269.767 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OZ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 755 A SER 755 1_555 C C2 MQ2 . A MQ2 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale2 B OG SER 755 B SER 755 1_555 E C2 MQ2 . B MQ2 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? # _chem_comp.formula 'C3 H9 N O' _chem_comp.formula_weight 75.11 _chem_comp.id TMO _chem_comp.mon_nstd_flag . _chem_comp.name 'trimethylamine oxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA NAC TMO sing 371 n n CAA HAA TMO sing 372 n n CAA HAAA TMO sing 373 n n CAA HAAB TMO sing 374 n n NAC CAD TMO sing 375 n n NAC CAB TMO sing 376 n n NAC OAE TMO sing 377 n n CAD HAD TMO sing 378 n n CAD HADA TMO sing 379 n n CAD HADB TMO sing 380 n n CAB HAB TMO sing 381 n n CAB HABA TMO sing 382 n n CAB HABB TMO sing 383 n n # _atom_sites.entry_id 7OZ7 _atom_sites.fract_transf_matrix[1][1] 0.006692 _atom_sites.fract_transf_matrix[1][2] 0.003864 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MQ2 A 1 901 901 MQ2 L84 . D 3 TMO A 1 902 1001 TMO TMO . E 2 MQ2 B 1 901 901 MQ2 L84 . F 3 TMO B 1 902 1001 TMO TMO . G 4 HOH A 1 1001 108 HOH HOH . G 4 HOH A 2 1002 222 HOH HOH . G 4 HOH A 3 1003 218 HOH HOH . G 4 HOH A 4 1004 36 HOH HOH . G 4 HOH A 5 1005 34 HOH HOH . G 4 HOH A 6 1006 329 HOH HOH . G 4 HOH A 7 1007 163 HOH HOH . G 4 HOH A 8 1008 31 HOH HOH . G 4 HOH A 9 1009 143 HOH HOH . G 4 HOH A 10 1010 64 HOH HOH . G 4 HOH A 11 1011 251 HOH HOH . G 4 HOH A 12 1012 67 HOH HOH . G 4 HOH A 13 1013 167 HOH HOH . G 4 HOH A 14 1014 273 HOH HOH . G 4 HOH A 15 1015 388 HOH HOH . G 4 HOH A 16 1016 134 HOH HOH . G 4 HOH A 17 1017 253 HOH HOH . G 4 HOH A 18 1018 71 HOH HOH . G 4 HOH A 19 1019 68 HOH HOH . G 4 HOH A 20 1020 11 HOH HOH . G 4 HOH A 21 1021 320 HOH HOH . G 4 HOH A 22 1022 25 HOH HOH . G 4 HOH A 23 1023 176 HOH HOH . G 4 HOH A 24 1024 309 HOH HOH . G 4 HOH A 25 1025 132 HOH HOH . G 4 HOH A 26 1026 410 HOH HOH . G 4 HOH A 27 1027 182 HOH HOH . G 4 HOH A 28 1028 23 HOH HOH . G 4 HOH A 29 1029 395 HOH HOH . G 4 HOH A 30 1030 240 HOH HOH . G 4 HOH A 31 1031 103 HOH HOH . G 4 HOH A 32 1032 219 HOH HOH . G 4 HOH A 33 1033 259 HOH HOH . G 4 HOH A 34 1034 140 HOH HOH . G 4 HOH A 35 1035 313 HOH HOH . G 4 HOH A 36 1036 150 HOH HOH . G 4 HOH A 37 1037 81 HOH HOH . G 4 HOH A 38 1038 85 HOH HOH . G 4 HOH A 39 1039 369 HOH HOH . G 4 HOH A 40 1040 110 HOH HOH . G 4 HOH A 41 1041 350 HOH HOH . G 4 HOH A 42 1042 254 HOH HOH . G 4 HOH A 43 1043 114 HOH HOH . G 4 HOH A 44 1044 160 HOH HOH . G 4 HOH A 45 1045 3 HOH HOH . G 4 HOH A 46 1046 272 HOH HOH . G 4 HOH A 47 1047 65 HOH HOH . G 4 HOH A 48 1048 285 HOH HOH . G 4 HOH A 49 1049 38 HOH HOH . G 4 HOH A 50 1050 332 HOH HOH . G 4 HOH A 51 1051 345 HOH HOH . G 4 HOH A 52 1052 188 HOH HOH . G 4 HOH A 53 1053 243 HOH HOH . G 4 HOH A 54 1054 366 HOH HOH . G 4 HOH A 55 1055 80 HOH HOH . G 4 HOH A 56 1056 378 HOH HOH . G 4 HOH A 57 1057 22 HOH HOH . G 4 HOH A 58 1058 400 HOH HOH . G 4 HOH A 59 1059 386 HOH HOH . G 4 HOH A 60 1060 1 HOH HOH . G 4 HOH A 61 1061 247 HOH HOH . G 4 HOH A 62 1062 278 HOH HOH . G 4 HOH A 63 1063 47 HOH HOH . G 4 HOH A 64 1064 122 HOH HOH . G 4 HOH A 65 1065 189 HOH HOH . G 4 HOH A 66 1066 377 HOH HOH . G 4 HOH A 67 1067 302 HOH HOH . G 4 HOH A 68 1068 368 HOH HOH . G 4 HOH A 69 1069 168 HOH HOH . G 4 HOH A 70 1070 360 HOH HOH . G 4 HOH A 71 1071 393 HOH HOH . G 4 HOH A 72 1072 66 HOH HOH . G 4 HOH A 73 1073 412 HOH HOH . G 4 HOH A 74 1074 138 HOH HOH . G 4 HOH A 75 1075 217 HOH HOH . G 4 HOH A 76 1076 380 HOH HOH . G 4 HOH A 77 1077 105 HOH HOH . G 4 HOH A 78 1078 356 HOH HOH . G 4 HOH A 79 1079 98 HOH HOH . G 4 HOH A 80 1080 330 HOH HOH . G 4 HOH A 81 1081 317 HOH HOH . G 4 HOH A 82 1082 274 HOH HOH . G 4 HOH A 83 1083 371 HOH HOH . G 4 HOH A 84 1084 57 HOH HOH . G 4 HOH A 85 1085 348 HOH HOH . G 4 HOH A 86 1086 44 HOH HOH . G 4 HOH A 87 1087 234 HOH HOH . G 4 HOH A 88 1088 417 HOH HOH . G 4 HOH A 89 1089 153 HOH HOH . G 4 HOH A 90 1090 37 HOH HOH . G 4 HOH A 91 1091 142 HOH HOH . G 4 HOH A 92 1092 78 HOH HOH . G 4 HOH A 93 1093 10 HOH HOH . G 4 HOH A 94 1094 396 HOH HOH . G 4 HOH A 95 1095 231 HOH HOH . G 4 HOH A 96 1096 162 HOH HOH . G 4 HOH A 97 1097 74 HOH HOH . G 4 HOH A 98 1098 370 HOH HOH . G 4 HOH A 99 1099 365 HOH HOH . G 4 HOH A 100 1100 269 HOH HOH . G 4 HOH A 101 1101 131 HOH HOH . G 4 HOH A 102 1102 35 HOH HOH . G 4 HOH A 103 1103 133 HOH HOH . G 4 HOH A 104 1104 91 HOH HOH . G 4 HOH A 105 1105 48 HOH HOH . G 4 HOH A 106 1106 326 HOH HOH . G 4 HOH A 107 1107 343 HOH HOH . G 4 HOH A 108 1108 361 HOH HOH . G 4 HOH A 109 1109 113 HOH HOH . G 4 HOH A 110 1110 32 HOH HOH . G 4 HOH A 111 1111 129 HOH HOH . G 4 HOH A 112 1112 392 HOH HOH . G 4 HOH A 113 1113 303 HOH HOH . G 4 HOH A 114 1114 94 HOH HOH . G 4 HOH A 115 1115 13 HOH HOH . G 4 HOH A 116 1116 347 HOH HOH . G 4 HOH A 117 1117 239 HOH HOH . G 4 HOH A 118 1118 186 HOH HOH . G 4 HOH A 119 1119 357 HOH HOH . G 4 HOH A 120 1120 262 HOH HOH . G 4 HOH A 121 1121 159 HOH HOH . G 4 HOH A 122 1122 413 HOH HOH . G 4 HOH A 123 1123 6 HOH HOH . G 4 HOH A 124 1124 375 HOH HOH . G 4 HOH A 125 1125 212 HOH HOH . G 4 HOH A 126 1126 165 HOH HOH . G 4 HOH A 127 1127 107 HOH HOH . G 4 HOH A 128 1128 41 HOH HOH . G 4 HOH A 129 1129 28 HOH HOH . G 4 HOH A 130 1130 104 HOH HOH . G 4 HOH A 131 1131 171 HOH HOH . G 4 HOH A 132 1132 310 HOH HOH . G 4 HOH A 133 1133 403 HOH HOH . G 4 HOH A 134 1134 130 HOH HOH . G 4 HOH A 135 1135 202 HOH HOH . G 4 HOH A 136 1136 346 HOH HOH . G 4 HOH A 137 1137 384 HOH HOH . G 4 HOH A 138 1138 411 HOH HOH . G 4 HOH A 139 1139 148 HOH HOH . G 4 HOH A 140 1140 292 HOH HOH . G 4 HOH A 141 1141 311 HOH HOH . G 4 HOH A 142 1142 139 HOH HOH . G 4 HOH A 143 1143 358 HOH HOH . G 4 HOH A 144 1144 391 HOH HOH . G 4 HOH A 145 1145 409 HOH HOH . G 4 HOH A 146 1146 92 HOH HOH . G 4 HOH A 147 1147 291 HOH HOH . G 4 HOH A 148 1148 405 HOH HOH . G 4 HOH A 149 1149 416 HOH HOH . G 4 HOH A 150 1150 106 HOH HOH . G 4 HOH A 151 1151 230 HOH HOH . G 4 HOH A 152 1152 226 HOH HOH . G 4 HOH A 153 1153 298 HOH HOH . G 4 HOH A 154 1154 225 HOH HOH . G 4 HOH A 155 1155 211 HOH HOH . G 4 HOH A 156 1156 419 HOH HOH . G 4 HOH A 157 1157 304 HOH HOH . G 4 HOH A 158 1158 208 HOH HOH . G 4 HOH A 159 1159 420 HOH HOH . H 4 HOH B 1 1001 260 HOH HOH . H 4 HOH B 2 1002 27 HOH HOH . H 4 HOH B 3 1003 69 HOH HOH . H 4 HOH B 4 1004 5 HOH HOH . H 4 HOH B 5 1005 97 HOH HOH . H 4 HOH B 6 1006 56 HOH HOH . H 4 HOH B 7 1007 29 HOH HOH . H 4 HOH B 8 1008 154 HOH HOH . H 4 HOH B 9 1009 374 HOH HOH . H 4 HOH B 10 1010 76 HOH HOH . H 4 HOH B 11 1011 158 HOH HOH . H 4 HOH B 12 1012 181 HOH HOH . H 4 HOH B 13 1013 242 HOH HOH . H 4 HOH B 14 1014 73 HOH HOH . H 4 HOH B 15 1015 33 HOH HOH . H 4 HOH B 16 1016 333 HOH HOH . H 4 HOH B 17 1017 63 HOH HOH . H 4 HOH B 18 1018 135 HOH HOH . H 4 HOH B 19 1019 95 HOH HOH . H 4 HOH B 20 1020 224 HOH HOH . H 4 HOH B 21 1021 337 HOH HOH . H 4 HOH B 22 1022 2 HOH HOH . H 4 HOH B 23 1023 187 HOH HOH . H 4 HOH B 24 1024 7 HOH HOH . H 4 HOH B 25 1025 328 HOH HOH . H 4 HOH B 26 1026 266 HOH HOH . H 4 HOH B 27 1027 221 HOH HOH . H 4 HOH B 28 1028 399 HOH HOH . H 4 HOH B 29 1029 43 HOH HOH . H 4 HOH B 30 1030 112 HOH HOH . H 4 HOH B 31 1031 166 HOH HOH . H 4 HOH B 32 1032 280 HOH HOH . H 4 HOH B 33 1033 26 HOH HOH . H 4 HOH B 34 1034 295 HOH HOH . H 4 HOH B 35 1035 136 HOH HOH . H 4 HOH B 36 1036 321 HOH HOH . H 4 HOH B 37 1037 177 HOH HOH . H 4 HOH B 38 1038 50 HOH HOH . H 4 HOH B 39 1039 184 HOH HOH . H 4 HOH B 40 1040 126 HOH HOH . H 4 HOH B 41 1041 404 HOH HOH . H 4 HOH B 42 1042 183 HOH HOH . H 4 HOH B 43 1043 294 HOH HOH . H 4 HOH B 44 1044 364 HOH HOH . H 4 HOH B 45 1045 220 HOH HOH . H 4 HOH B 46 1046 72 HOH HOH . H 4 HOH B 47 1047 355 HOH HOH . H 4 HOH B 48 1048 93 HOH HOH . H 4 HOH B 49 1049 147 HOH HOH . H 4 HOH B 50 1050 204 HOH HOH . H 4 HOH B 51 1051 210 HOH HOH . H 4 HOH B 52 1052 387 HOH HOH . H 4 HOH B 53 1053 174 HOH HOH . H 4 HOH B 54 1054 323 HOH HOH . H 4 HOH B 55 1055 20 HOH HOH . H 4 HOH B 56 1056 83 HOH HOH . H 4 HOH B 57 1057 145 HOH HOH . H 4 HOH B 58 1058 102 HOH HOH . H 4 HOH B 59 1059 381 HOH HOH . H 4 HOH B 60 1060 331 HOH HOH . H 4 HOH B 61 1061 289 HOH HOH . H 4 HOH B 62 1062 125 HOH HOH . H 4 HOH B 63 1063 60 HOH HOH . H 4 HOH B 64 1064 325 HOH HOH . H 4 HOH B 65 1065 241 HOH HOH . H 4 HOH B 66 1066 286 HOH HOH . H 4 HOH B 67 1067 338 HOH HOH . H 4 HOH B 68 1068 315 HOH HOH . H 4 HOH B 69 1069 349 HOH HOH . H 4 HOH B 70 1070 121 HOH HOH . H 4 HOH B 71 1071 206 HOH HOH . H 4 HOH B 72 1072 216 HOH HOH . H 4 HOH B 73 1073 18 HOH HOH . H 4 HOH B 74 1074 408 HOH HOH . H 4 HOH B 75 1075 51 HOH HOH . H 4 HOH B 76 1076 53 HOH HOH . H 4 HOH B 77 1077 353 HOH HOH . H 4 HOH B 78 1078 115 HOH HOH . H 4 HOH B 79 1079 195 HOH HOH . H 4 HOH B 80 1080 367 HOH HOH . H 4 HOH B 81 1081 215 HOH HOH . H 4 HOH B 82 1082 283 HOH HOH . H 4 HOH B 83 1083 146 HOH HOH . H 4 HOH B 84 1084 335 HOH HOH . H 4 HOH B 85 1085 45 HOH HOH . H 4 HOH B 86 1086 223 HOH HOH . H 4 HOH B 87 1087 205 HOH HOH . H 4 HOH B 88 1088 123 HOH HOH . H 4 HOH B 89 1089 287 HOH HOH . H 4 HOH B 90 1090 128 HOH HOH . H 4 HOH B 91 1091 61 HOH HOH . H 4 HOH B 92 1092 284 HOH HOH . H 4 HOH B 93 1093 340 HOH HOH . H 4 HOH B 94 1094 282 HOH HOH . H 4 HOH B 95 1095 276 HOH HOH . H 4 HOH B 96 1096 324 HOH HOH . H 4 HOH B 97 1097 15 HOH HOH . H 4 HOH B 98 1098 414 HOH HOH . H 4 HOH B 99 1099 344 HOH HOH . H 4 HOH B 100 1100 173 HOH HOH . H 4 HOH B 101 1101 175 HOH HOH . H 4 HOH B 102 1102 227 HOH HOH . H 4 HOH B 103 1103 191 HOH HOH . H 4 HOH B 104 1104 84 HOH HOH . H 4 HOH B 105 1105 406 HOH HOH . H 4 HOH B 106 1106 385 HOH HOH . H 4 HOH B 107 1107 359 HOH HOH . H 4 HOH B 108 1108 415 HOH HOH . H 4 HOH B 109 1109 213 HOH HOH . H 4 HOH B 110 1110 418 HOH HOH . H 4 HOH B 111 1111 21 HOH HOH . H 4 HOH B 112 1112 394 HOH HOH . H 4 HOH B 113 1113 252 HOH HOH . H 4 HOH B 114 1114 407 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA TMO . . . D 3 -7.613 44.995 4.462 1 84.29 ? CAA TMO 902 A 1 HETATM 2 N NAC TMO . . . D 3 -6.981 45.74 5.56 1 84.98 ? NAC TMO 902 A 1 HETATM 3 C CAD TMO . . . D 3 -7.565 45.3 6.836 1 83.71 ? CAD TMO 902 A 1 HETATM 4 C CAB TMO . . . D 3 -5.531 45.488 5.568 1 83.67 ? CAB TMO 902 A 1 HETATM 5 O OAE TMO . . . D 3 -7.188 46.966 5.407 1 84.09 ? OAE TMO 902 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #