data_7OZ8 # _model_server_result.job_id tH3vwHbGaHjhgBed8XixIw _model_server_result.datetime_utc '2024-11-15 18:36:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oz8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7OZ8 # _exptl.entry_id 7OZ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.271 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OZ8 _cell.length_a 56.389 _cell.length_b 56.389 _cell.length_c 279.763 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OZ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H15 N O9 S' _chem_comp.formula_weight 301.271 _chem_comp.id NGS _chem_comp.mon_nstd_flag n _chem_comp.name 2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 2-(acetylamino)-2-deoxy-6-O-sulfo-beta-D-glucopyranose;N-ACETYL-D-GLUCOSAMINE-6-SULFATE;N-acetyl-6-O-sulfo-beta-D-glucosamine;2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucose;2-acetamido-2-deoxy-6-O-sulfo-D-glucose;2-acetamido-2-deoxy-6-O-sulfo-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NGS sing 243 n n C1 O1 NGS sing 244 n n C1 O5 NGS sing 245 n n C1 H1 NGS sing 246 n n C2 C3 NGS sing 247 n n C2 N2 NGS sing 248 n n C2 H2 NGS sing 249 n n C3 C4 NGS sing 250 n n C3 O3 NGS sing 251 n n C3 H3 NGS sing 252 n n C4 C5 NGS sing 253 n n C4 O4 NGS sing 254 n n C4 H4 NGS sing 255 n n C5 C6 NGS sing 256 n n C5 O5 NGS sing 257 n n C5 H5 NGS sing 258 n n C6 O6 NGS sing 259 n n C6 H61 NGS sing 260 n n C6 H62 NGS sing 261 n n O3 HO3 NGS sing 262 n n O6 S NGS sing 263 n n N2 C7 NGS sing 264 n n N2 HN2 NGS sing 265 n n C7 O7 NGS doub 266 n n C7 C8 NGS sing 267 n n C8 H81 NGS sing 268 n n C8 H82 NGS sing 269 n n C8 H83 NGS sing 270 n n S O7A NGS doub 271 n n S O8 NGS sing 272 n n S O9 NGS doub 273 n n O4 HO4 NGS sing 274 n n O1 HO1 NGS sing 275 n n O8 H15 NGS sing 276 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NGS DGlcpNAc[6S]b 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NGS N-acetyl-6-sulfo-b-D-glucopyranose 'COMMON NAME' GMML 1 NGS b-D-GlcpNAc6SO3 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 # _atom_sites.entry_id 7OZ8 _atom_sites.fract_transf_matrix[1][1] 0.017734 _atom_sites.fract_transf_matrix[1][2] 0.010239 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NGS AAA 1 601 501 NGS N6S . C 3 ACT AAA 1 602 601 ACT ACT . D 4 HOH AAA 1 701 124 HOH HOH . D 4 HOH AAA 2 702 123 HOH HOH . D 4 HOH AAA 3 703 141 HOH HOH . D 4 HOH AAA 4 704 85 HOH HOH . D 4 HOH AAA 5 705 163 HOH HOH . D 4 HOH AAA 6 706 173 HOH HOH . D 4 HOH AAA 7 707 1 HOH HOH . D 4 HOH AAA 8 708 155 HOH HOH . D 4 HOH AAA 9 709 109 HOH HOH . D 4 HOH AAA 10 710 103 HOH HOH . D 4 HOH AAA 11 711 110 HOH HOH . D 4 HOH AAA 12 712 119 HOH HOH . D 4 HOH AAA 13 713 160 HOH HOH . D 4 HOH AAA 14 714 44 HOH HOH . D 4 HOH AAA 15 715 158 HOH HOH . D 4 HOH AAA 16 716 80 HOH HOH . D 4 HOH AAA 17 717 37 HOH HOH . D 4 HOH AAA 18 718 3 HOH HOH . D 4 HOH AAA 19 719 54 HOH HOH . D 4 HOH AAA 20 720 96 HOH HOH . D 4 HOH AAA 21 721 31 HOH HOH . D 4 HOH AAA 22 722 156 HOH HOH . D 4 HOH AAA 23 723 142 HOH HOH . D 4 HOH AAA 24 724 152 HOH HOH . D 4 HOH AAA 25 725 28 HOH HOH . D 4 HOH AAA 26 726 125 HOH HOH . D 4 HOH AAA 27 727 82 HOH HOH . D 4 HOH AAA 28 728 127 HOH HOH . D 4 HOH AAA 29 729 188 HOH HOH . D 4 HOH AAA 30 730 140 HOH HOH . D 4 HOH AAA 31 731 183 HOH HOH . D 4 HOH AAA 32 732 169 HOH HOH . D 4 HOH AAA 33 733 178 HOH HOH . D 4 HOH AAA 34 734 43 HOH HOH . D 4 HOH AAA 35 735 50 HOH HOH . D 4 HOH AAA 36 736 45 HOH HOH . D 4 HOH AAA 37 737 53 HOH HOH . D 4 HOH AAA 38 738 65 HOH HOH . D 4 HOH AAA 39 739 115 HOH HOH . D 4 HOH AAA 40 740 16 HOH HOH . D 4 HOH AAA 41 741 21 HOH HOH . D 4 HOH AAA 42 742 87 HOH HOH . D 4 HOH AAA 43 743 194 HOH HOH . D 4 HOH AAA 44 744 15 HOH HOH . D 4 HOH AAA 45 745 137 HOH HOH . D 4 HOH AAA 46 746 68 HOH HOH . D 4 HOH AAA 47 747 71 HOH HOH . D 4 HOH AAA 48 748 192 HOH HOH . D 4 HOH AAA 49 749 83 HOH HOH . D 4 HOH AAA 50 750 67 HOH HOH . D 4 HOH AAA 51 751 120 HOH HOH . D 4 HOH AAA 52 752 106 HOH HOH . D 4 HOH AAA 53 753 64 HOH HOH . D 4 HOH AAA 54 754 101 HOH HOH . D 4 HOH AAA 55 755 176 HOH HOH . D 4 HOH AAA 56 756 148 HOH HOH . D 4 HOH AAA 57 757 34 HOH HOH . D 4 HOH AAA 58 758 121 HOH HOH . D 4 HOH AAA 59 759 52 HOH HOH . D 4 HOH AAA 60 760 184 HOH HOH . D 4 HOH AAA 61 761 32 HOH HOH . D 4 HOH AAA 62 762 4 HOH HOH . D 4 HOH AAA 63 763 81 HOH HOH . D 4 HOH AAA 64 764 62 HOH HOH . D 4 HOH AAA 65 765 187 HOH HOH . D 4 HOH AAA 66 766 41 HOH HOH . D 4 HOH AAA 67 767 42 HOH HOH . D 4 HOH AAA 68 768 159 HOH HOH . D 4 HOH AAA 69 769 117 HOH HOH . D 4 HOH AAA 70 770 138 HOH HOH . D 4 HOH AAA 71 771 2 HOH HOH . D 4 HOH AAA 72 772 20 HOH HOH . D 4 HOH AAA 73 773 24 HOH HOH . D 4 HOH AAA 74 774 22 HOH HOH . D 4 HOH AAA 75 775 113 HOH HOH . D 4 HOH AAA 76 776 9 HOH HOH . D 4 HOH AAA 77 777 122 HOH HOH . D 4 HOH AAA 78 778 174 HOH HOH . D 4 HOH AAA 79 779 79 HOH HOH . D 4 HOH AAA 80 780 47 HOH HOH . D 4 HOH AAA 81 781 180 HOH HOH . D 4 HOH AAA 82 782 144 HOH HOH . D 4 HOH AAA 83 783 13 HOH HOH . D 4 HOH AAA 84 784 181 HOH HOH . D 4 HOH AAA 85 785 139 HOH HOH . D 4 HOH AAA 86 786 104 HOH HOH . D 4 HOH AAA 87 787 10 HOH HOH . D 4 HOH AAA 88 788 23 HOH HOH . D 4 HOH AAA 89 789 25 HOH HOH . D 4 HOH AAA 90 790 143 HOH HOH . D 4 HOH AAA 91 791 70 HOH HOH . D 4 HOH AAA 92 792 157 HOH HOH . D 4 HOH AAA 93 793 61 HOH HOH . D 4 HOH AAA 94 794 154 HOH HOH . D 4 HOH AAA 95 795 177 HOH HOH . D 4 HOH AAA 96 796 185 HOH HOH . D 4 HOH AAA 97 797 189 HOH HOH . D 4 HOH AAA 98 798 17 HOH HOH . D 4 HOH AAA 99 799 77 HOH HOH . D 4 HOH AAA 100 800 7 HOH HOH . D 4 HOH AAA 101 801 33 HOH HOH . D 4 HOH AAA 102 802 136 HOH HOH . D 4 HOH AAA 103 803 35 HOH HOH . D 4 HOH AAA 104 804 118 HOH HOH . D 4 HOH AAA 105 805 95 HOH HOH . D 4 HOH AAA 106 806 40 HOH HOH . D 4 HOH AAA 107 807 59 HOH HOH . D 4 HOH AAA 108 808 132 HOH HOH . D 4 HOH AAA 109 809 60 HOH HOH . D 4 HOH AAA 110 810 8 HOH HOH . D 4 HOH AAA 111 811 164 HOH HOH . D 4 HOH AAA 112 812 97 HOH HOH . D 4 HOH AAA 113 813 114 HOH HOH . D 4 HOH AAA 114 814 89 HOH HOH . D 4 HOH AAA 115 815 75 HOH HOH . D 4 HOH AAA 116 816 193 HOH HOH . D 4 HOH AAA 117 817 100 HOH HOH . D 4 HOH AAA 118 818 29 HOH HOH . D 4 HOH AAA 119 819 38 HOH HOH . D 4 HOH AAA 120 820 66 HOH HOH . D 4 HOH AAA 121 821 133 HOH HOH . D 4 HOH AAA 122 822 63 HOH HOH . D 4 HOH AAA 123 823 108 HOH HOH . D 4 HOH AAA 124 824 48 HOH HOH . D 4 HOH AAA 125 825 129 HOH HOH . D 4 HOH AAA 126 826 26 HOH HOH . D 4 HOH AAA 127 827 170 HOH HOH . D 4 HOH AAA 128 828 107 HOH HOH . D 4 HOH AAA 129 829 55 HOH HOH . D 4 HOH AAA 130 830 36 HOH HOH . D 4 HOH AAA 131 831 30 HOH HOH . D 4 HOH AAA 132 832 131 HOH HOH . D 4 HOH AAA 133 833 162 HOH HOH . D 4 HOH AAA 134 834 78 HOH HOH . D 4 HOH AAA 135 835 116 HOH HOH . D 4 HOH AAA 136 836 90 HOH HOH . D 4 HOH AAA 137 837 91 HOH HOH . D 4 HOH AAA 138 838 69 HOH HOH . D 4 HOH AAA 139 839 84 HOH HOH . D 4 HOH AAA 140 840 5 HOH HOH . D 4 HOH AAA 141 841 172 HOH HOH . D 4 HOH AAA 142 842 99 HOH HOH . D 4 HOH AAA 143 843 46 HOH HOH . D 4 HOH AAA 144 844 186 HOH HOH . D 4 HOH AAA 145 845 93 HOH HOH . D 4 HOH AAA 146 846 150 HOH HOH . D 4 HOH AAA 147 847 191 HOH HOH . D 4 HOH AAA 148 848 135 HOH HOH . D 4 HOH AAA 149 849 126 HOH HOH . D 4 HOH AAA 150 850 112 HOH HOH . D 4 HOH AAA 151 851 76 HOH HOH . D 4 HOH AAA 152 852 27 HOH HOH . D 4 HOH AAA 153 853 128 HOH HOH . D 4 HOH AAA 154 854 92 HOH HOH . D 4 HOH AAA 155 855 98 HOH HOH . D 4 HOH AAA 156 856 49 HOH HOH . D 4 HOH AAA 157 857 145 HOH HOH . D 4 HOH AAA 158 858 179 HOH HOH . D 4 HOH AAA 159 859 88 HOH HOH . D 4 HOH AAA 160 860 161 HOH HOH . D 4 HOH AAA 161 861 146 HOH HOH . D 4 HOH AAA 162 862 190 HOH HOH . D 4 HOH AAA 163 863 151 HOH HOH . D 4 HOH AAA 164 864 58 HOH HOH . D 4 HOH AAA 165 865 175 HOH HOH . D 4 HOH AAA 166 866 147 HOH HOH . D 4 HOH AAA 167 867 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NGS . . . B 2 -30.338 73.671 15.656 1 25.34 0 C1 NGS 601 AAA 1 HETATM 2 C C2 NGS . . . B 2 -30.522 72.719 16.847 1 25.31 0 C2 NGS 601 AAA 1 HETATM 3 C C3 NGS . . . B 2 -30.082 71.321 16.449 1 23.87 0 C3 NGS 601 AAA 1 HETATM 4 C C4 NGS . . . B 2 -30.758 70.856 15.171 1 24.62 0 C4 NGS 601 AAA 1 HETATM 5 C C5 NGS . . . B 2 -30.548 71.912 14.105 1 26.52 0 C5 NGS 601 AAA 1 HETATM 6 C C6 NGS . . . B 2 -31.164 71.549 12.774 1 27.88 0 C6 NGS 601 AAA 1 HETATM 7 O O1 NGS . . . B 2 -30.933 74.88 16.087 1 28.8 0 O1 NGS 601 AAA 1 HETATM 8 O O3 NGS . . . B 2 -30.431 70.484 17.534 1 24.14 0 O3 NGS 601 AAA 1 HETATM 9 O O5 NGS . . . B 2 -31.063 73.186 14.521 1 25.22 0 O5 NGS 601 AAA 1 HETATM 10 O O6 NGS . . . B 2 -30.868 72.585 11.846 1 27.87 0 O6 NGS 601 AAA 1 HETATM 11 N N2 NGS . . . B 2 -29.766 73.153 18.028 1 23.82 0 N2 NGS 601 AAA 1 HETATM 12 C C7 NGS . . . B 2 -30.32 73.628 19.168 1 22.73 0 C7 NGS 601 AAA 1 HETATM 13 O O7 NGS . . . B 2 -31.52 73.653 19.39 1 24.73 0 O7 NGS 601 AAA 1 HETATM 14 C C8 NGS . . . B 2 -29.354 74.143 20.188 1 23.4 0 C8 NGS 601 AAA 1 HETATM 15 S S NGS . . . B 2 -31.638 72.525 10.497 1 31.06 0 S NGS 601 AAA 1 HETATM 16 O O7A NGS . . . B 2 -31.251 71.298 9.775 1 31.38 0 O7A NGS 601 AAA 1 HETATM 17 O O8 NGS . . . B 2 -33.056 72.429 10.815 1 31.81 0 O8 NGS 601 AAA 1 HETATM 18 O O9 NGS . . . B 2 -31.298 73.735 9.755 1 31.2 0 O9 NGS 601 AAA 1 HETATM 19 O O4 NGS . . . B 2 -30.166 69.622 14.789 1 23.87 0 O4 NGS 601 AAA 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #