data_7P04 # _model_server_result.job_id 6AjwdCOKJzyBmJPnCWDkmw _model_server_result.datetime_utc '2025-02-27 06:32:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1601}' # _entry.id 7P04 # _exptl.entry_id 7P04 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7P04 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 722 A CYS 722 1_555 A SG CYS 742 A CYS 742 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 1411 A CYS 1411 1_555 A SG CYS 1455 A CYS 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 1427 A CYS 1427 1_555 A SG CYS 1452 A CYS 1452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 7P04 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1601 1601 ATP ATP . C 3 ADP A 1 1602 1701 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 174.234 158.613 143.311 1 58.35 ? PG ATP 1601 A 1 HETATM 2 O O1G ATP . . . B 2 173.59 158.108 144.578 1 58.35 ? O1G ATP 1601 A 1 HETATM 3 O O2G ATP . . . B 2 173.537 159.797 142.689 1 58.35 ? O2G ATP 1601 A 1 HETATM 4 O O3G ATP . . . B 2 175.735 158.736 143.399 1 58.35 ? O3G ATP 1601 A 1 HETATM 5 P PB ATP . . . B 2 172.579 157.07 141.634 1 58.35 ? PB ATP 1601 A 1 HETATM 6 O O1B ATP . . . B 2 171.495 157.656 142.5 1 58.35 ? O1B ATP 1601 A 1 HETATM 7 O O2B ATP . . . B 2 172.631 157.406 140.17 1 58.35 ? O2B ATP 1601 A 1 HETATM 8 O O3B ATP . . . B 2 174.02 157.408 142.261 1 58.35 ? O3B ATP 1601 A 1 HETATM 9 P PA ATP . . . B 2 171.45 154.692 142.63 1 58.35 ? PA ATP 1601 A 1 HETATM 10 O O1A ATP . . . B 2 171.031 155.576 143.772 1 58.35 ? O1A ATP 1601 A 1 HETATM 11 O O2A ATP . . . B 2 172.007 153.328 142.93 1 58.35 ? O2A ATP 1601 A 1 HETATM 12 O O3A ATP . . . B 2 172.528 155.469 141.73 1 58.35 ? O3A ATP 1601 A 1 HETATM 13 O O5' ATP . . . B 2 170.216 154.536 141.621 1 58.35 ? O5' ATP 1601 A 1 HETATM 14 C C5' ATP . . . B 2 169.321 153.441 141.756 1 58.35 ? C5' ATP 1601 A 1 HETATM 15 C C4' ATP . . . B 2 167.882 153.908 141.61 1 58.35 ? C4' ATP 1601 A 1 HETATM 16 O O4' ATP . . . B 2 167.012 152.902 142.129 1 58.35 ? O4' ATP 1601 A 1 HETATM 17 C C3' ATP . . . B 2 167.608 155.176 142.396 1 58.35 ? C3' ATP 1601 A 1 HETATM 18 O O3' ATP . . . B 2 166.877 156.097 141.585 1 58.35 ? O3' ATP 1601 A 1 HETATM 19 C C2' ATP . . . B 2 166.766 154.745 143.57 1 58.35 ? C2' ATP 1601 A 1 HETATM 20 O O2' ATP . . . B 2 165.78 155.729 143.87 1 58.35 ? O2' ATP 1601 A 1 HETATM 21 C C1' ATP . . . B 2 166.121 153.458 143.095 1 58.35 ? C1' ATP 1601 A 1 HETATM 22 N N9 ATP . . . B 2 165.882 152.483 144.189 1 58.35 ? N9 ATP 1601 A 1 HETATM 23 C C8 ATP . . . B 2 164.702 151.878 144.421 1 58.35 ? C8 ATP 1601 A 1 HETATM 24 N N7 ATP . . . B 2 164.783 151.037 145.479 1 58.35 ? N7 ATP 1601 A 1 HETATM 25 C C5 ATP . . . B 2 166.037 151.105 145.943 1 58.35 ? C5 ATP 1601 A 1 HETATM 26 C C6 ATP . . . B 2 166.783 150.474 147.043 1 58.35 ? C6 ATP 1601 A 1 HETATM 27 N N6 ATP . . . B 2 166.174 149.588 147.861 1 58.35 ? N6 ATP 1601 A 1 HETATM 28 N N1 ATP . . . B 2 168.078 150.816 147.19 1 58.35 ? N1 ATP 1601 A 1 HETATM 29 C C2 ATP . . . B 2 168.681 151.7 146.373 1 58.35 ? C2 ATP 1601 A 1 HETATM 30 N N3 ATP . . . B 2 168.057 152.31 145.355 1 58.35 ? N3 ATP 1601 A 1 HETATM 31 C C4 ATP . . . B 2 166.759 152.06 145.094 1 58.35 ? C4 ATP 1601 A 1 HETATM 32 H "H5'1" ATP . . . B 2 169.46 152.969 142.731 1 58.35 ? "H5'1" ATP 1601 A 1 HETATM 33 H "H5'2" ATP . . . B 2 169.544 152.701 140.984 1 58.35 ? "H5'2" ATP 1601 A 1 HETATM 34 H H4' ATP . . . B 2 167.666 154.087 140.547 1 58.35 ? H4' ATP 1601 A 1 HETATM 35 H H3' ATP . . . B 2 168.544 155.622 142.757 1 58.35 ? H3' ATP 1601 A 1 HETATM 36 H HO3' ATP . . . B 2 166.938 156.987 141.959 1 58.35 ? HO3' ATP 1601 A 1 HETATM 37 H H2' ATP . . . B 2 167.414 154.562 144.437 1 58.35 ? H2' ATP 1601 A 1 HETATM 38 H HO2' ATP . . . B 2 166.21 156.592 143.928 1 58.35 ? HO2' ATP 1601 A 1 HETATM 39 H H1' ATP . . . B 2 165.166 153.709 142.612 1 58.35 ? H1' ATP 1601 A 1 HETATM 40 H H8 ATP . . . B 2 163.807 152.039 143.836 1 58.35 ? H8 ATP 1601 A 1 HETATM 41 H HN61 ATP . . . B 2 166.691 149.158 148.613 1 58.35 ? HN61 ATP 1601 A 1 HETATM 42 H HN62 ATP . . . B 2 165.201 149.358 147.72 1 58.35 ? HN62 ATP 1601 A 1 HETATM 43 H H2 ATP . . . B 2 169.722 151.931 146.541 1 58.35 ? H2 ATP 1601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #