data_7P05 # _model_server_result.job_id ci8iKRlTpLFGAG-ChzIjFw _model_server_result.datetime_utc '2025-02-27 06:22:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p05 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1602}' # _entry.id 7P05 # _exptl.entry_id 7P05 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7P05 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P05 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 722 A CYS 722 1_555 A SG CYS 742 A CYS 742 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 1411 A CYS 1411 1_555 A SG CYS 1455 A CYS 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 1427 A CYS 1427 1_555 A SG CYS 1452 A CYS 1452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7P05 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1601 1601 ATP ATP . C 3 ADP A 1 1602 1701 ADP ADP . D 4 RHQ A 1 1603 1801 RHQ RHQ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 181.321 183.597 143.486 1 92.49 ? PB ADP 1602 A 1 HETATM 2 O O1B ADP . . . C 3 182.609 183.77 142.72 1 92.49 ? O1B ADP 1602 A 1 HETATM 3 O O2B ADP . . . C 3 180.094 184.115 142.78 1 92.49 ? O2B ADP 1602 A 1 HETATM 4 O O3B ADP . . . C 3 181.15 182.233 144.107 1 92.49 ? O3B ADP 1602 A 1 HETATM 5 P PA ADP . . . C 3 182.087 186.059 144.555 1 92.49 ? PA ADP 1602 A 1 HETATM 6 O O1A ADP . . . C 3 183.303 185.955 143.674 1 92.49 ? O1A ADP 1602 A 1 HETATM 7 O O2A ADP . . . C 3 180.998 187.021 144.152 1 92.49 ? O2A ADP 1602 A 1 HETATM 8 O O3A ADP . . . C 3 181.489 184.581 144.746 1 92.49 ? O3A ADP 1602 A 1 HETATM 9 O O5' ADP . . . C 3 182.561 186.442 146.039 1 92.49 ? O5' ADP 1602 A 1 HETATM 10 C C5' ADP . . . C 3 183.948 186.521 146.351 1 92.49 ? C5' ADP 1602 A 1 HETATM 11 C C4' ADP . . . C 3 184.357 187.98 146.461 1 92.49 ? C4' ADP 1602 A 1 HETATM 12 O O4' ADP . . . C 3 184.118 188.485 147.773 1 92.49 ? O4' ADP 1602 A 1 HETATM 13 C C3' ADP . . . C 3 185.838 188.169 146.187 1 92.49 ? C3' ADP 1602 A 1 HETATM 14 O O3' ADP . . . C 3 186.029 188.738 144.891 1 92.49 ? O3' ADP 1602 A 1 HETATM 15 C C2' ADP . . . C 3 186.336 189.107 147.264 1 92.49 ? C2' ADP 1602 A 1 HETATM 16 O O2' ADP . . . C 3 186.962 190.255 146.686 1 92.49 ? O2' ADP 1602 A 1 HETATM 17 C C1' ADP . . . C 3 185.09 189.493 148.052 1 92.49 ? C1' ADP 1602 A 1 HETATM 18 N N9 ADP . . . C 3 185.316 189.605 149.516 1 92.49 ? N9 ADP 1602 A 1 HETATM 19 C C8 ADP . . . C 3 186.487 189.807 150.152 1 92.49 ? C8 ADP 1602 A 1 HETATM 20 N N7 ADP . . . C 3 186.302 189.869 151.495 1 92.49 ? N7 ADP 1602 A 1 HETATM 21 C C5 ADP . . . C 3 184.987 189.717 151.732 1 92.49 ? C5 ADP 1602 A 1 HETATM 22 C C6 ADP . . . C 3 184.111 189.682 152.925 1 92.49 ? C6 ADP 1602 A 1 HETATM 23 N N6 ADP . . . C 3 184.616 189.828 154.173 1 92.49 ? N6 ADP 1602 A 1 HETATM 24 N N1 ADP . . . C 3 182.789 189.499 152.721 1 92.49 ? N1 ADP 1602 A 1 HETATM 25 C C2 ADP . . . C 3 182.262 189.353 151.491 1 92.49 ? C2 ADP 1602 A 1 HETATM 26 N N3 ADP . . . C 3 183.003 189.375 150.369 1 92.49 ? N3 ADP 1602 A 1 HETATM 27 C C4 ADP . . . C 3 184.342 189.554 150.423 1 92.49 ? C4 ADP 1602 A 1 HETATM 28 H "H5'1" ADP . . . C 3 184.546 186.019 145.59 1 92.49 ? "H5'1" ADP 1602 A 1 HETATM 29 H "H5'2" ADP . . . C 3 184.131 186.022 147.305 1 92.49 ? "H5'2" ADP 1602 A 1 HETATM 30 H H4' ADP . . . C 3 183.785 188.563 145.726 1 92.49 ? H4' ADP 1602 A 1 HETATM 31 H H3' ADP . . . C 3 186.356 187.204 146.271 1 92.49 ? H3' ADP 1602 A 1 HETATM 32 H HO3' ADP . . . C 3 186.958 188.656 144.635 1 92.49 ? HO3' ADP 1602 A 1 HETATM 33 H H2' ADP . . . C 3 187.04 188.559 147.905 1 92.49 ? H2' ADP 1602 A 1 HETATM 34 H HO2' ADP . . . C 3 187.752 189.983 146.2 1 92.49 ? HO2' ADP 1602 A 1 HETATM 35 H H1' ADP . . . C 3 184.73 190.458 147.668 1 92.49 ? H1' ADP 1602 A 1 HETATM 36 H H8 ADP . . . C 3 187.449 189.895 149.663 1 92.49 ? H8 ADP 1602 A 1 HETATM 37 H HN61 ADP . . . C 3 185.609 189.963 154.302 1 92.49 ? HN61 ADP 1602 A 1 HETATM 38 H HN62 ADP . . . C 3 184.002 189.802 154.974 1 92.49 ? HN62 ADP 1602 A 1 HETATM 39 H H2 ADP . . . C 3 181.192 189.211 151.401 1 92.49 ? H2 ADP 1602 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 39 #