data_7P05
#
_model_server_result.job_id            wP52EtJRoYgJsuStXzUvvw 
_model_server_result.datetime_utc      '2025-02-27 06:28:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7p05 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1603}' 
#
_entry.id    7P05 
#
_exptl.entry_id    7P05 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              443.557 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'RHODAMINE 6G' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7P05 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7P05 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 722 A CYS 722 1_555 A SG CYS 742 A CYS 742 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 A SG CYS 1411 A CYS 1411 1_555 A SG CYS 1455 A CYS 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 A SG CYS 1427 A CYS 1427 1_555 A SG CYS 1452 A CYS 1452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
#
_chem_comp.formula           'C28 H31 N2 O3 1' 
_chem_comp.formula_weight    443.557 
_chem_comp.id                RHQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'RHODAMINE 6G' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RHQ sing 368 n y 
C1 C6 RHQ doub 369 n y 
C1 O1 RHQ sing 370 n y 
C2 C3 RHQ sing 371 n y 
C2 C9 RHQ doub 372 n y 
C3 C4 RHQ doub 373 n y 
C3 H31 RHQ sing 374 n n 
C4 C5 RHQ sing 375 n y 
C4 C21 RHQ sing 376 n n 
C5 C6 RHQ sing 377 n y 
C5 N2 RHQ doub 378 z n 
C6 H61 RHQ sing 379 n n 
O1 C7 RHQ sing 380 n y 
C7 C8 RHQ doub 381 n y 
C7 C10 RHQ sing 382 n y 
C8 C9 RHQ sing 383 n y 
C8 C13 RHQ sing 384 n y 
C9 C14 RHQ sing 385 n y 
C10 C11 RHQ doub 386 n y 
C10 H101 RHQ sing 387 n n 
C11 C12 RHQ sing 388 n y 
C11 N1 RHQ sing 389 n n 
C12 C13 RHQ doub 390 n y 
C12 C20 RHQ sing 391 n n 
C13 H131 RHQ sing 392 n n 
N1 C22 RHQ sing 393 n n 
N1 HN11 RHQ sing 394 n n 
C14 C15 RHQ doub 395 n y 
C14 C19 RHQ sing 396 n y 
C15 C16 RHQ sing 397 n y 
C15 H151 RHQ sing 398 n n 
C16 C17 RHQ doub 399 n y 
C16 H161 RHQ sing 400 n n 
C17 C18 RHQ sing 401 n y 
C17 H171 RHQ sing 402 n n 
C18 C19 RHQ doub 403 n y 
C18 H181 RHQ sing 404 n n 
C19 C26 RHQ sing 405 n n 
C20 H201 RHQ sing 406 n n 
C20 H202 RHQ sing 407 n n 
C20 H203 RHQ sing 408 n n 
C21 H211 RHQ sing 409 n n 
C21 H212 RHQ sing 410 n n 
C21 H213 RHQ sing 411 n n 
C22 C23 RHQ sing 412 n n 
C22 H221 RHQ sing 413 n n 
C22 H222 RHQ sing 414 n n 
C23 H231 RHQ sing 415 n n 
C23 H232 RHQ sing 416 n n 
C23 H233 RHQ sing 417 n n 
N2 C24 RHQ sing 418 n n 
N2 HN21 RHQ sing 419 n n 
C24 C25 RHQ sing 420 n n 
C24 H241 RHQ sing 421 n n 
C24 H242 RHQ sing 422 n n 
C25 H251 RHQ sing 423 n n 
C25 H252 RHQ sing 424 n n 
C25 H253 RHQ sing 425 n n 
C26 O27 RHQ doub 426 n n 
C26 O2 RHQ sing 427 n n 
O2 C28 RHQ sing 428 n n 
C28 C29 RHQ sing 429 n n 
C28 H281 RHQ sing 430 n n 
C28 H282 RHQ sing 431 n n 
C29 H291 RHQ sing 432 n n 
C29 H292 RHQ sing 433 n n 
C29 H293 RHQ sing 434 n n 
#
_atom_sites.entry_id                     7P05 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 1601 1601 ATP ATP . 
C 3 ADP A 1 1602 1701 ADP ADP . 
D 4 RHQ A 1 1603 1801 RHQ RHQ . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RHQ . . . D 4 176.58 169.629 182.252 1 73.62 ? C1 RHQ 1603 A 1 
HETATM 2 C C2 RHQ . . . D 4 176.456 171.003 182.036 1 73.62 ? C2 RHQ 1603 A 1 
HETATM 3 C C3 RHQ . . . D 4 177.603 171.818 182.242 1 73.62 ? C3 RHQ 1603 A 1 
HETATM 4 C C4 RHQ . . . D 4 178.777 171.272 182.629 1 73.62 ? C4 RHQ 1603 A 1 
HETATM 5 C C5 RHQ . . . D 4 178.843 169.861 182.835 1 73.62 ? C5 RHQ 1603 A 1 
HETATM 6 C C6 RHQ . . . D 4 177.738 169.013 182.644 1 73.62 ? C6 RHQ 1603 A 1 
HETATM 7 O O1 RHQ . . . D 4 175.563 168.753 182.095 1 73.62 ? O1 RHQ 1603 A 1 
HETATM 8 C C7 RHQ . . . D 4 174.429 169.256 181.515 1 73.62 ? C7 RHQ 1603 A 1 
HETATM 9 C C8 RHQ . . . D 4 174.244 170.621 181.283 1 73.62 ? C8 RHQ 1603 A 1 
HETATM 10 C C9 RHQ . . . D 4 175.244 171.539 181.644 1 73.62 ? C9 RHQ 1603 A 1 
HETATM 11 C C10 RHQ . . . D 4 173.528 168.273 181.204 1 73.62 ? C10 RHQ 1603 A 1 
HETATM 12 C C11 RHQ . . . D 4 172.31 168.651 180.604 1 73.62 ? C11 RHQ 1603 A 1 
HETATM 13 C C12 RHQ . . . D 4 172.079 170.039 180.34 1 73.62 ? C12 RHQ 1603 A 1 
HETATM 14 C C13 RHQ . . . D 4 173.013 170.975 180.673 1 73.62 ? C13 RHQ 1603 A 1 
HETATM 15 N N1 RHQ . . . D 4 171.424 167.707 180.28 1 73.62 ? N1 RHQ 1603 A 1 
HETATM 16 C C14 RHQ . . . D 4 175.022 172.998 181.771 1 73.62 ? C14 RHQ 1603 A 1 
HETATM 17 C C15 RHQ . . . D 4 175.444 173.827 180.74 1 73.62 ? C15 RHQ 1603 A 1 
HETATM 18 C C16 RHQ . . . D 4 175.267 175.203 180.836 1 73.62 ? C16 RHQ 1603 A 1 
HETATM 19 C C17 RHQ . . . D 4 174.679 175.756 181.96 1 73.62 ? C17 RHQ 1603 A 1 
HETATM 20 C C18 RHQ . . . D 4 174.263 174.928 183.004 1 73.62 ? C18 RHQ 1603 A 1 
HETATM 21 C C19 RHQ . . . D 4 174.433 173.554 182.921 1 73.62 ? C19 RHQ 1603 A 1 
HETATM 22 C C20 RHQ . . . D 4 170.801 170.412 179.714 1 73.62 ? C20 RHQ 1603 A 1 
HETATM 23 C C21 RHQ . . . D 4 179.939 172.186 182.823 1 73.62 ? C21 RHQ 1603 A 1 
HETATM 24 C C22 RHQ . . . D 4 171.852 166.385 179.823 1 73.62 ? C22 RHQ 1603 A 1 
HETATM 25 C C23 RHQ . . . D 4 170.829 165.704 178.957 1 73.62 ? C23 RHQ 1603 A 1 
HETATM 26 N N2 RHQ . . . D 4 179.998 169.282 183.211 1 73.62 ? N2 RHQ 1603 A 1 
HETATM 27 C C24 RHQ . . . D 4 181.013 168.984 182.238 1 73.62 ? C24 RHQ 1603 A 1 
HETATM 28 C C25 RHQ . . . D 4 180.717 167.761 181.445 1 73.62 ? C25 RHQ 1603 A 1 
HETATM 29 C C26 RHQ . . . D 4 173.996 172.67 184.024 1 73.62 ? C26 RHQ 1603 A 1 
HETATM 30 O O27 RHQ . . . D 4 172.84 172.687 184.456 1 73.62 ? O27 RHQ 1603 A 1 
HETATM 31 O O2 RHQ . . . D 4 174.886 171.818 184.585 1 73.62 ? O2 RHQ 1603 A 1 
HETATM 32 C C28 RHQ . . . D 4 174.419 170.999 185.657 1 73.62 ? C28 RHQ 1603 A 1 
HETATM 33 C C29 RHQ . . . D 4 175.51 170.006 186.009 1 73.62 ? C29 RHQ 1603 A 1 
HETATM 34 H H31 RHQ . . . D 4 177.551 172.732 182.109 1 73.62 ? H31 RHQ 1603 A 1 
HETATM 35 H H61 RHQ . . . D 4 177.8 168.097 182.78 1 73.62 ? H61 RHQ 1603 A 1 
HETATM 36 H H101 RHQ . . . D 4 173.676 167.369 181.368 1 73.62 ? H101 RHQ 1603 A 1 
HETATM 37 H H131 RHQ . . . D 4 172.849 171.872 180.501 1 73.62 ? H131 RHQ 1603 A 1 
HETATM 38 H HN11 RHQ . . . D 4 170.576 167.849 180.33 1 73.62 ? HN11 RHQ 1603 A 1 
HETATM 39 H H151 RHQ . . . D 4 175.843 173.498 179.969 1 73.62 ? H151 RHQ 1603 A 1 
HETATM 40 H H161 RHQ . . . D 4 175.539 175.762 180.145 1 73.62 ? H161 RHQ 1603 A 1 
HETATM 41 H H171 RHQ . . . D 4 174.557 176.676 182.024 1 73.62 ? H171 RHQ 1603 A 1 
HETATM 42 H H181 RHQ . . . D 4 173.867 175.316 183.753 1 73.62 ? H181 RHQ 1603 A 1 
HETATM 43 H H201 RHQ . . . D 4 170.738 170.068 178.808 1 73.62 ? H201 RHQ 1603 A 1 
HETATM 44 H H202 RHQ . . . D 4 170.692 171.374 179.683 1 73.62 ? H202 RHQ 1603 A 1 
HETATM 45 H H203 RHQ . . . D 4 170.036 170.07 180.2 1 73.62 ? H203 RHQ 1603 A 1 
HETATM 46 H H211 RHQ . . . D 4 180.784 171.763 183.038 1 73.62 ? H211 RHQ 1603 A 1 
HETATM 47 H H212 RHQ . . . D 4 179.782 172.795 183.563 1 73.62 ? H212 RHQ 1603 A 1 
HETATM 48 H H213 RHQ . . . D 4 180.102 172.723 182.031 1 73.62 ? H213 RHQ 1603 A 1 
HETATM 49 H H221 RHQ . . . D 4 172.051 165.843 180.596 1 73.62 ? H221 RHQ 1603 A 1 
HETATM 50 H H222 RHQ . . . D 4 172.683 166.491 179.333 1 73.62 ? H222 RHQ 1603 A 1 
HETATM 51 H H231 RHQ . . . D 4 169.934 165.996 179.187 1 73.62 ? H231 RHQ 1603 A 1 
HETATM 52 H H232 RHQ . . . D 4 170.858 164.74 179.064 1 73.62 ? H232 RHQ 1603 A 1 
HETATM 53 H H233 RHQ . . . D 4 170.975 165.9 178.024 1 73.62 ? H233 RHQ 1603 A 1 
HETATM 54 H HN21 RHQ . . . D 4 180.143 169.095 184.031 1 73.62 ? HN21 RHQ 1603 A 1 
HETATM 55 H H241 RHQ . . . D 4 181.869 168.882 182.694 1 73.62 ? H241 RHQ 1603 A 1 
HETATM 56 H H242 RHQ . . . D 4 181.076 169.735 181.65 1 73.62 ? H242 RHQ 1603 A 1 
HETATM 57 H H251 RHQ . . . D 4 179.769 167.604 181.444 1 73.62 ? H251 RHQ 1603 A 1 
HETATM 58 H H252 RHQ . . . D 4 181.156 166.998 181.821 1 73.62 ? H252 RHQ 1603 A 1 
HETATM 59 H H253 RHQ . . . D 4 181.013 167.88 180.533 1 73.62 ? H253 RHQ 1603 A 1 
HETATM 60 H H281 RHQ . . . D 4 173.614 170.521 185.401 1 73.62 ? H281 RHQ 1603 A 1 
HETATM 61 H H282 RHQ . . . D 4 174.203 171.536 186.435 1 73.62 ? H282 RHQ 1603 A 1 
HETATM 62 H H291 RHQ . . . D 4 175.26 169.43 186.748 1 73.62 ? H291 RHQ 1603 A 1 
HETATM 63 H H292 RHQ . . . D 4 176.345 170.445 186.234 1 73.62 ? H292 RHQ 1603 A 1 
HETATM 64 H H293 RHQ . . . D 4 175.699 169.424 185.256 1 73.62 ? H293 RHQ 1603 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           358 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           64 
#