data_7P06 # _model_server_result.job_id Jd35l6BSywOayF3HCdpNdQ _model_server_result.datetime_utc '2024-12-26 13:54:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p06 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1701}' # _entry.id 7P06 # _exptl.entry_id 7P06 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7P06 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P06 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 722 A CYS 722 1_555 A SG CYS 742 A CYS 742 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 1411 A CYS 1411 1_555 A SG CYS 1455 A CYS 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 1427 A CYS 1427 1_555 A SG CYS 1452 A CYS 1452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A OG1 THR 912 A THR 912 1_555 C MG MG . A MG 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc2 A OE1 GLN 951 A GLN 951 1_555 C MG MG . A MG 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc3 C MG MG . A MG 1702 1_555 D O1B AOV . A AOV 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc4 C MG MG . A MG 1702 1_555 D O1G AOV . A AOV 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 121 n n PG O2G ATP sing 122 n n PG O3G ATP sing 123 n n PG O3B ATP sing 124 n n O2G HOG2 ATP sing 125 n n O3G HOG3 ATP sing 126 n n PB O1B ATP doub 127 n n PB O2B ATP sing 128 n n PB O3B ATP sing 129 n n PB O3A ATP sing 130 n n O2B HOB2 ATP sing 131 n n PA O1A ATP doub 132 n n PA O2A ATP sing 133 n n PA O3A ATP sing 134 n n PA O5' ATP sing 135 n n O2A HOA2 ATP sing 136 n n O5' C5' ATP sing 137 n n C5' C4' ATP sing 138 n n C5' "H5'1" ATP sing 139 n n C5' "H5'2" ATP sing 140 n n C4' O4' ATP sing 141 n n C4' C3' ATP sing 142 n n C4' H4' ATP sing 143 n n O4' C1' ATP sing 144 n n C3' O3' ATP sing 145 n n C3' C2' ATP sing 146 n n C3' H3' ATP sing 147 n n O3' HO3' ATP sing 148 n n C2' O2' ATP sing 149 n n C2' C1' ATP sing 150 n n C2' H2' ATP sing 151 n n O2' HO2' ATP sing 152 n n C1' N9 ATP sing 153 n n C1' H1' ATP sing 154 n n N9 C8 ATP sing 155 n y N9 C4 ATP sing 156 n y C8 N7 ATP doub 157 n y C8 H8 ATP sing 158 n n N7 C5 ATP sing 159 n y C5 C6 ATP sing 160 n y C5 C4 ATP doub 161 n y C6 N6 ATP sing 162 n n C6 N1 ATP doub 163 n y N6 HN61 ATP sing 164 n n N6 HN62 ATP sing 165 n n N1 C2 ATP sing 166 n y C2 N3 ATP doub 167 n y C2 H2 ATP sing 168 n n N3 C4 ATP sing 169 n y # _atom_sites.entry_id 7P06 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1701 1701 ATP ATP . C 3 MG A 1 1702 1801 MG MG . D 4 AOV A 1 1703 1901 AOV AOV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 139.09 147.012 178.647 1 71.18 ? PG ATP 1701 A 1 HETATM 2 O O1G ATP . . . B 2 139.471 147.188 180.093 1 71.18 ? O1G ATP 1701 A 1 HETATM 3 O O2G ATP . . . B 2 139.871 145.945 177.923 1 71.18 ? O2G ATP 1701 A 1 HETATM 4 O O3G ATP . . . B 2 138.913 148.291 177.873 1 71.18 ? O3G ATP 1701 A 1 HETATM 5 P PB ATP . . . B 2 136.441 147.311 179.439 1 71.18 ? PB ATP 1701 A 1 HETATM 6 O O1B ATP . . . B 2 135.684 146.434 180.404 1 71.18 ? O1B ATP 1701 A 1 HETATM 7 O O2B ATP . . . B 2 137.027 148.612 179.904 1 71.18 ? O2B ATP 1701 A 1 HETATM 8 O O3B ATP . . . B 2 137.587 146.45 178.712 1 71.18 ? O3B ATP 1701 A 1 HETATM 9 P PA ATP . . . B 2 134.265 148.68 178.554 1 71.18 ? PA ATP 1701 A 1 HETATM 10 O O1A ATP . . . B 2 134.516 149.993 177.862 1 71.18 ? O1A ATP 1701 A 1 HETATM 11 O O2A ATP . . . B 2 134.073 148.6 180.044 1 71.18 ? O2A ATP 1701 A 1 HETATM 12 O O3A ATP . . . B 2 135.451 147.662 178.233 1 71.18 ? O3A ATP 1701 A 1 HETATM 13 O O5' ATP . . . B 2 133.043 147.93 177.841 1 71.18 ? O5' ATP 1701 A 1 HETATM 14 C C5' ATP . . . B 2 131.987 147.464 178.664 1 71.18 ? C5' ATP 1701 A 1 HETATM 15 C C4' ATP . . . B 2 130.783 147.075 177.822 1 71.18 ? C4' ATP 1701 A 1 HETATM 16 O O4' ATP . . . B 2 130.342 148.22 177.11 1 71.18 ? O4' ATP 1701 A 1 HETATM 17 C C3' ATP . . . B 2 131.103 145.997 176.805 1 71.18 ? C3' ATP 1701 A 1 HETATM 18 O O3' ATP . . . B 2 130.202 144.9 176.965 1 71.18 ? O3' ATP 1701 A 1 HETATM 19 C C2' ATP . . . B 2 130.92 146.638 175.449 1 71.18 ? C2' ATP 1701 A 1 HETATM 20 O O2' ATP . . . B 2 130.155 145.795 174.584 1 71.18 ? O2' ATP 1701 A 1 HETATM 21 C C1' ATP . . . B 2 130.197 147.943 175.725 1 71.18 ? C1' ATP 1701 A 1 HETATM 22 N N9 ATP . . . B 2 130.746 149.089 174.965 1 71.18 ? N9 ATP 1701 A 1 HETATM 23 C C8 ATP . . . B 2 132.017 149.524 174.959 1 71.18 ? C8 ATP 1701 A 1 HETATM 24 N N7 ATP . . . B 2 132.146 150.607 174.15 1 71.18 ? N7 ATP 1701 A 1 HETATM 25 C C5 ATP . . . B 2 130.939 150.874 173.635 1 71.18 ? C5 ATP 1701 A 1 HETATM 26 C C6 ATP . . . B 2 130.372 151.872 172.713 1 71.18 ? C6 ATP 1701 A 1 HETATM 27 N N6 ATP . . . B 2 131.154 152.829 172.169 1 71.18 ? N6 ATP 1701 A 1 HETATM 28 N N1 ATP . . . B 2 129.056 151.796 172.435 1 71.18 ? N1 ATP 1701 A 1 HETATM 29 C C2 ATP . . . B 2 128.271 150.847 172.972 1 71.18 ? C2 ATP 1701 A 1 HETATM 30 N N3 ATP . . . B 2 128.728 149.911 173.817 1 71.18 ? N3 ATP 1701 A 1 HETATM 31 C C4 ATP . . . B 2 130.025 149.873 174.176 1 71.18 ? C4 ATP 1701 A 1 HETATM 32 H "H5'1" ATP . . . B 2 131.738 148.247 179.381 1 71.18 ? "H5'1" ATP 1701 A 1 HETATM 33 H "H5'2" ATP . . . B 2 132.324 146.599 179.227 1 71.18 ? "H5'2" ATP 1701 A 1 HETATM 34 H H4' ATP . . . B 2 129.99 146.718 178.491 1 71.18 ? H4' ATP 1701 A 1 HETATM 35 H H3' ATP . . . B 2 132.147 145.672 176.924 1 71.18 ? H3' ATP 1701 A 1 HETATM 36 H HO3' ATP . . . B 2 130.471 144.172 176.388 1 71.18 ? HO3' ATP 1701 A 1 HETATM 37 H H2' ATP . . . B 2 131.909 146.84 175.02 1 71.18 ? H2' ATP 1701 A 1 HETATM 38 H HO2' ATP . . . B 2 130.686 145.024 174.34 1 71.18 ? HO2' ATP 1701 A 1 HETATM 39 H H1' ATP . . . B 2 129.134 147.812 175.484 1 71.18 ? H1' ATP 1701 A 1 HETATM 40 H H8 ATP . . . B 2 132.827 149.071 175.518 1 71.18 ? H8 ATP 1701 A 1 HETATM 41 H HN61 ATP . . . B 2 130.753 153.507 171.539 1 71.18 ? HN61 ATP 1701 A 1 HETATM 42 H HN62 ATP . . . B 2 132.14 152.868 172.39 1 71.18 ? HN62 ATP 1701 A 1 HETATM 43 H H2 ATP . . . B 2 127.221 150.837 172.711 1 71.18 ? H2 ATP 1701 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 100 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #