data_7P06 # _model_server_result.job_id Pw-KzntGMyPylSHxI8qmSg _model_server_result.datetime_utc '2024-12-26 14:03:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p06 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1703}' # _entry.id 7P06 # _exptl.entry_id 7P06 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 544.156 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADP ORTHOVANADATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7P06 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P06 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 722 A CYS 722 1_555 A SG CYS 742 A CYS 742 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 1411 A CYS 1411 1_555 A SG CYS 1455 A CYS 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 1427 A CYS 1427 1_555 A SG CYS 1452 A CYS 1452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A OG1 THR 912 A THR 912 1_555 C MG MG . A MG 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc2 A OE1 GLN 951 A GLN 951 1_555 C MG MG . A MG 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc3 C MG MG . A MG 1702 1_555 D O1B AOV . A AOV 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc4 C MG MG . A MG 1702 1_555 D O1G AOV . A AOV 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? # _chem_comp.formula 'C10 H17 N5 O14 P2 V' _chem_comp.formula_weight 544.156 _chem_comp.id AOV _chem_comp.mon_nstd_flag . _chem_comp.name 'ADP ORTHOVANADATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B AOV doub 13 n n PB O2B AOV sing 14 n n PB O3B AOV sing 15 n n PB O3A AOV sing 16 n n O3B VG AOV sing 17 n n PA O1A AOV doub 18 n n PA O2A AOV sing 19 n n PA O3A AOV sing 20 n n PA O5' AOV sing 21 n n O5' C5' AOV sing 22 n n C5' C4' AOV sing 23 n n C4' O4' AOV sing 24 n n C4' C3' AOV sing 25 n n O4' C1' AOV sing 26 n n C3' O3' AOV sing 27 n n C3' C2' AOV sing 28 n n C2' O2' AOV sing 29 n n C2' C1' AOV sing 30 n n C1' N9 AOV sing 31 n n N9 C8 AOV sing 32 n y N9 C4 AOV sing 33 n y C8 N7 AOV doub 34 n y N7 C5 AOV sing 35 n y C5 C6 AOV sing 36 n y C5 C4 AOV doub 37 n y C6 N6 AOV sing 38 n n C6 N1 AOV doub 39 n y N1 C2 AOV sing 40 n y C2 N3 AOV doub 41 n y N3 C4 AOV sing 42 n y VG O1G AOV doub 43 n n VG O2G AOV sing 44 n n VG O3G AOV sing 45 n n VG O4G AOV sing 46 n n O2B H2B AOV sing 47 n n O2A H2A AOV sing 48 n n C5' "H5'1" AOV sing 49 n n C5' "H5'2" AOV sing 50 n n C4' H4' AOV sing 51 n n C3' H3' AOV sing 52 n n C1' H1' AOV sing 53 n n O3' HA AOV sing 54 n n C2' H2' AOV sing 55 n n O2' HB AOV sing 56 n n C8 H8 AOV sing 57 n n N6 H61N AOV sing 58 n n N6 H62N AOV sing 59 n n C2 H2 AOV sing 60 n n O2G H2G1 AOV sing 61 n n O3G H3G1 AOV sing 62 n n O4G H4G1 AOV sing 63 n n # _atom_sites.entry_id 7P06 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1701 1701 ATP ATP . C 3 MG A 1 1702 1801 MG MG . D 4 AOV A 1 1703 1901 AOV AOV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB AOV . . . D 4 159.321 138.454 177.404 1 59.04 ? PB AOV 1703 A 1 HETATM 2 O O1B AOV . . . D 4 158.234 137.708 176.745 1 59.04 ? O1B AOV 1703 A 1 HETATM 3 O O2B AOV . . . D 4 160.272 137.425 178.185 1 59.04 ? O2B AOV 1703 A 1 HETATM 4 O O3B AOV . . . D 4 158.728 139.543 178.427 1 59.04 ? O3B AOV 1703 A 1 HETATM 5 P PA AOV . . . D 4 161.339 138.691 175.293 1 59.04 ? PA AOV 1703 A 1 HETATM 6 O O1A AOV . . . D 4 161.779 137.352 175.718 1 59.04 ? O1A AOV 1703 A 1 HETATM 7 O O2A AOV . . . D 4 160.746 138.639 173.803 1 59.04 ? O2A AOV 1703 A 1 HETATM 8 O O3A AOV . . . D 4 160.206 139.201 176.3 1 59.04 ? O3A AOV 1703 A 1 HETATM 9 O O5' AOV . . . D 4 162.596 139.684 175.329 1 59.04 ? O5' AOV 1703 A 1 HETATM 10 C C5' AOV . . . D 4 163.863 139.237 175.799 1 59.04 ? C5' AOV 1703 A 1 HETATM 11 C C4' AOV . . . D 4 164.962 140.153 175.274 1 59.04 ? C4' AOV 1703 A 1 HETATM 12 O O4' AOV . . . D 4 164.959 140.142 173.835 1 59.04 ? O4' AOV 1703 A 1 HETATM 13 C C3' AOV . . . D 4 164.703 141.588 175.776 1 59.04 ? C3' AOV 1703 A 1 HETATM 14 O O3' AOV . . . D 4 165.9 142.104 176.353 1 59.04 ? O3' AOV 1703 A 1 HETATM 15 C C2' AOV . . . D 4 164.321 142.407 174.524 1 59.04 ? C2' AOV 1703 A 1 HETATM 16 O O2' AOV . . . D 4 164.884 143.716 174.564 1 59.04 ? O2' AOV 1703 A 1 HETATM 17 C C1' AOV . . . D 4 165.01 141.527 173.463 1 59.04 ? C1' AOV 1703 A 1 HETATM 18 N N9 AOV . . . D 4 165.392 142.004 172.133 1 59.04 ? N9 AOV 1703 A 1 HETATM 19 C C8 AOV . . . D 4 165.884 143.237 171.841 1 59.04 ? C8 AOV 1703 A 1 HETATM 20 N N7 AOV . . . D 4 166.122 143.328 170.567 1 59.04 ? N7 AOV 1703 A 1 HETATM 21 C C5 AOV . . . D 4 165.8 142.16 169.971 1 59.04 ? C5 AOV 1703 A 1 HETATM 22 C C6 AOV . . . D 4 165.843 141.695 168.653 1 59.04 ? C6 AOV 1703 A 1 HETATM 23 N N6 AOV . . . D 4 166.299 142.518 167.643 1 59.04 ? N6 AOV 1703 A 1 HETATM 24 N N1 AOV . . . D 4 165.441 140.457 168.406 1 59.04 ? N1 AOV 1703 A 1 HETATM 25 C C2 AOV . . . D 4 165.006 139.678 169.375 1 59.04 ? C2 AOV 1703 A 1 HETATM 26 N N3 AOV . . . D 4 164.946 140.072 170.626 1 59.04 ? N3 AOV 1703 A 1 HETATM 27 C C4 AOV . . . D 4 165.329 141.295 170.965 1 59.04 ? C4 AOV 1703 A 1 HETATM 28 V VG AOV . . . D 4 156.898 139.712 178.456 1 59.04 ? VG AOV 1703 A 1 HETATM 29 O O1G AOV . . . D 4 156.83 139.606 176.883 1 59.04 ? O1G AOV 1703 A 1 HETATM 30 O O2G AOV . . . D 4 156.775 138.208 179.497 1 59.04 ? O2G AOV 1703 A 1 HETATM 31 O O3G AOV . . . D 4 157.068 141.356 179.247 1 59.04 ? O3G AOV 1703 A 1 HETATM 32 O O4G AOV . . . D 4 155.071 139.886 178.501 1 59.04 ? O4G AOV 1703 A 1 HETATM 33 H H2B AOV . . . D 4 160.587 137.73 178.914 1 59.04 ? H2B AOV 1703 A 1 HETATM 34 H H2A AOV . . . D 4 160.011 138.217 173.738 1 59.04 ? H2A AOV 1703 A 1 HETATM 35 H "H5'1" AOV . . . D 4 163.87 139.248 176.769 1 59.04 ? "H5'1" AOV 1703 A 1 HETATM 36 H "H5'2" AOV . . . D 4 164.023 138.333 175.486 1 59.04 ? "H5'2" AOV 1703 A 1 HETATM 37 H H4' AOV . . . D 4 165.823 139.845 175.597 1 59.04 ? H4' AOV 1703 A 1 HETATM 38 H H3' AOV . . . D 4 163.981 141.596 176.425 1 59.04 ? H3' AOV 1703 A 1 HETATM 39 H H1' AOV . . . D 4 164.136 141.405 173.062 1 59.04 ? H1' AOV 1703 A 1 HETATM 40 H HA AOV . . . D 4 165.807 142.384 177.151 1 59.04 ? HA AOV 1703 A 1 HETATM 41 H H2' AOV . . . D 4 163.36 142.435 174.396 1 59.04 ? H2' AOV 1703 A 1 HETATM 42 H HB AOV . . . D 4 165.446 143.831 175.192 1 59.04 ? HB AOV 1703 A 1 HETATM 43 H H8 AOV . . . D 4 166.027 143.916 172.461 1 59.04 ? H8 AOV 1703 A 1 HETATM 44 H H61N AOV . . . D 4 166.66 143.273 167.843 1 59.04 ? H61N AOV 1703 A 1 HETATM 45 H H62N AOV . . . D 4 166.066 142.361 166.831 1 59.04 ? H62N AOV 1703 A 1 HETATM 46 H H2 AOV . . . D 4 164.73 138.815 169.164 1 59.04 ? H2 AOV 1703 A 1 HETATM 47 H H2G1 AOV . . . D 4 156.137 137.689 179.282 1 59.04 ? H2G1 AOV 1703 A 1 HETATM 48 H H3G1 AOV . . . D 4 156.481 141.515 179.841 1 59.04 ? H3G1 AOV 1703 A 1 HETATM 49 H H4G1 AOV . . . D 4 154.771 140.506 178.004 1 59.04 ? H4G1 AOV 1703 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 49 #