data_7P09
#
_model_server_result.job_id            aXNGIEyinoxgChHpP5MgdQ 
_model_server_result.datetime_utc      '2025-03-31 12:29:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7p09 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":1001}' 
#
_entry.id    7P09 
#
_exptl.entry_id    7P09 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7P09 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7P09 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 L N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 466 A THR 530 1_555 I MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? 
metalc ? metalc2 H O2G ATP . A ATP 1001 1_555 I MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? 
metalc ? metalc3 H O2B ATP . A ATP 1001 1_555 I MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc4 B OG1 THR 466 B THR 530 1_555 K MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? 
metalc ? metalc5 J O2G ATP . B ATP 1001 1_555 K MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? 
metalc ? metalc6 J O2B ATP . B ATP 1001 1_555 K MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc7 C OG1 THR 466 C THR 530 1_555 M MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc8 L O2G ATP . C ATP 1001 1_555 M MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? 
metalc ? metalc9 L O2B ATP . C ATP 1001 1_555 M MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc10 L O3B ATP . C ATP 1001 1_555 M MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? 
metalc ? metalc11 F OG1 THR 466 F THR 530 1_555 Q MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc12 P O2G ATP . F ATP 1001 1_555 Q MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc13 P O2B ATP . F ATP 1001 1_555 Q MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     7P09 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 ATP A 1 1001 998 ATP ATP . 
I 4 MG A 1 1002 999 MG MG . 
J 3 ATP B 1 1001 998 ATP ATP . 
K 4 MG B 1 1002 999 MG MG . 
L 3 ATP C 1 1001 998 ATP ATP . 
M 4 MG C 1 1002 999 MG MG . 
N 5 ADP D 1 1001 999 ADP ADP . 
O 5 ADP E 1 1001 998 ADP ADP . 
P 3 ATP F 1 1001 998 ATP ATP . 
Q 4 MG F 1 1002 999 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . P 3 216.673 175.853 185.184 1 95.07 ? PG ATP 1001 F 1 
HETATM 2 O O1G ATP . . . P 3 216.049 175.893 186.537 1 95.07 ? O1G ATP 1001 F 1 
HETATM 3 O O2G ATP . . . P 3 215.701 175.456 184.069 1 95.07 ? O2G ATP 1001 F 1 
HETATM 4 O O3G ATP . . . P 3 217.377 177.157 184.793 1 95.07 ? O3G ATP 1001 F 1 
HETATM 5 P PB ATP . . . P 3 217.984 173.168 185.016 1 95.07 ? PB ATP 1001 F 1 
HETATM 6 O O1B ATP . . . P 3 217.498 172.477 186.225 1 95.07 ? O1B ATP 1001 F 1 
HETATM 7 O O2B ATP . . . P 3 217.34 172.74 183.698 1 95.07 ? O2B ATP 1001 F 1 
HETATM 8 O O3B ATP . . . P 3 217.823 174.745 185.127 1 95.07 ? O3B ATP 1001 F 1 
HETATM 9 P PA ATP . . . P 3 220.552 172.497 183.721 1 95.07 ? PA ATP 1001 F 1 
HETATM 10 O O1A ATP . . . P 3 220.719 173.496 182.645 1 95.07 ? O1A ATP 1001 F 1 
HETATM 11 O O2A ATP . . . P 3 220.036 171.135 183.259 1 95.07 ? O2A ATP 1001 F 1 
HETATM 12 O O3A ATP . . . P 3 219.558 173.013 184.844 1 95.07 ? O3A ATP 1001 F 1 
HETATM 13 O O5' ATP . . . P 3 221.896 172.273 184.519 1 95.07 ? O5' ATP 1001 F 1 
HETATM 14 C C5' ATP . . . P 3 223.033 173.141 184.329 1 95.07 ? C5' ATP 1001 F 1 
HETATM 15 C C4' ATP . . . P 3 224.185 172.325 183.799 1 95.07 ? C4' ATP 1001 F 1 
HETATM 16 O O4' ATP . . . P 3 224.952 171.799 184.901 1 95.07 ? O4' ATP 1001 F 1 
HETATM 17 C C3' ATP . . . P 3 223.792 171.099 182.984 1 95.07 ? C3' ATP 1001 F 1 
HETATM 18 O O3' ATP . . . P 3 223.558 171.446 181.624 1 95.07 ? O3' ATP 1001 F 1 
HETATM 19 C C2' ATP . . . P 3 225.021 170.2 183.135 1 95.07 ? C2' ATP 1001 F 1 
HETATM 20 O O2' ATP . . . P 3 226.028 170.514 182.181 1 95.07 ? O2' ATP 1001 F 1 
HETATM 21 C C1' ATP . . . P 3 225.496 170.536 184.555 1 95.07 ? C1' ATP 1001 F 1 
HETATM 22 N N9 ATP . . . P 3 225.091 169.566 185.566 1 95.07 ? N9 ATP 1001 F 1 
HETATM 23 C C8 ATP . . . P 3 224.167 169.744 186.562 1 95.07 ? C8 ATP 1001 F 1 
HETATM 24 N N7 ATP . . . P 3 224.003 168.697 187.333 1 95.07 ? N7 ATP 1001 F 1 
HETATM 25 C C5 ATP . . . P 3 224.883 167.763 186.809 1 95.07 ? C5 ATP 1001 F 1 
HETATM 26 C C6 ATP . . . P 3 225.192 166.439 187.174 1 95.07 ? C6 ATP 1001 F 1 
HETATM 27 N N6 ATP . . . P 3 224.624 165.797 188.2 1 95.07 ? N6 ATP 1001 F 1 
HETATM 28 N N1 ATP . . . P 3 226.118 165.784 186.439 1 95.07 ? N1 ATP 1001 F 1 
HETATM 29 C C2 ATP . . . P 3 226.69 166.418 185.413 1 95.07 ? C2 ATP 1001 F 1 
HETATM 30 N N3 ATP . . . P 3 226.48 167.662 184.976 1 95.07 ? N3 ATP 1001 F 1 
HETATM 31 C C4 ATP . . . P 3 225.56 168.285 185.719 1 95.07 ? C4 ATP 1001 F 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#