data_7P0V # _model_server_result.job_id OHVsv95-xD19By7RBGeFcw _model_server_result.datetime_utc '2024-11-22 22:14:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p0v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":200}' # _entry.id 7P0V # _exptl.entry_id 7P0V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7P0V _cell.length_a 42.993 _cell.length_b 62.722 _cell.length_c 138.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P0V _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OP1 C 13 B C 151 1_555 D NA NA . B NA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc2 B OP1 C 13 B C 151 1_555 D NA NA . B NA 200 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc3 D NA NA . B NA 200 1_555 F O HOH . B HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc4 D NA NA . B NA 200 1_555 F O HOH . B HOH 308 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? hydrog WATSON-CRICK hydrog1 B N1 G 1 B G 139 1_555 B N3 C 24 B C 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 G 1 B G 139 1_555 B O2 C 24 B C 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 G 1 B G 139 1_555 B N4 C 24 B C 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 G 2 B G 140 1_555 B N3 C 23 B C 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 G 2 B G 140 1_555 B O2 C 23 B C 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 G 2 B G 140 1_555 B N4 C 23 B C 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 G 3 B G 141 1_555 B N3 C 22 B C 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N2 G 3 B G 141 1_555 B O2 C 22 B C 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O6 G 3 B G 141 1_555 B N4 C 22 B C 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N1 G 4 B G 142 1_555 B N3 C 21 B C 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N2 G 4 B G 142 1_555 B O2 C 21 B C 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O6 G 4 B G 142 1_555 B N4 C 21 B C 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N1 A 5 B A 143 1_555 B N3 U 20 B U 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N6 A 5 B A 143 1_555 B O4 U 20 B U 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_18_PAIR hydrog15 B N3 C 6 B C 144 1_555 B N3 U 19 B U 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_18_PAIR hydrog16 B N4 C 6 B C 144 1_555 B O4 U 19 B U 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog17 B N3 U 7 B U 145 1_555 B O2 U 18 B U 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog18 B O4 U 7 B U 145 1_555 B N3 U 18 B U 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N1 G 8 B G 146 1_555 B N3 C 17 B C 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N2 G 8 B G 146 1_555 B O2 C 17 B C 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B O6 G 8 B G 146 1_555 B N4 C 17 B C 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N3 C 9 B C 147 1_555 B N1 G 16 B G 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N4 C 9 B C 147 1_555 B O6 G 16 B G 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B O2 C 9 B C 147 1_555 B N2 G 16 B G 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N1 G 10 B G 148 1_555 B N3 C 15 B C 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N2 G 10 B G 148 1_555 B O2 C 15 B C 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B O6 G 10 B G 148 1_555 B N4 C 15 B C 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-G MISPAIR' hydrog28 B O2 U 11 B U 149 1_555 B N1 G 14 B G 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7P0V _atom_sites.fract_transf_matrix[1][1] 0.02326 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015943 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 1PE A 1 800 800 1PE 1PE . D 4 NA B 1 200 200 NA NA . E 5 HOH A 1 901 17 HOH HOH . E 5 HOH A 2 902 11 HOH HOH . E 5 HOH A 3 903 47 HOH HOH . E 5 HOH A 4 904 38 HOH HOH . E 5 HOH A 5 905 35 HOH HOH . E 5 HOH A 6 906 1 HOH HOH . E 5 HOH A 7 907 21 HOH HOH . E 5 HOH A 8 908 28 HOH HOH . E 5 HOH A 9 909 18 HOH HOH . E 5 HOH A 10 910 24 HOH HOH . E 5 HOH A 11 911 44 HOH HOH . E 5 HOH A 12 912 16 HOH HOH . E 5 HOH A 13 913 2 HOH HOH . E 5 HOH A 14 914 42 HOH HOH . E 5 HOH A 15 915 20 HOH HOH . E 5 HOH A 16 916 14 HOH HOH . E 5 HOH A 17 917 45 HOH HOH . E 5 HOH A 18 918 3 HOH HOH . E 5 HOH A 19 919 46 HOH HOH . E 5 HOH A 20 920 43 HOH HOH . E 5 HOH A 21 921 6 HOH HOH . E 5 HOH A 22 922 32 HOH HOH . E 5 HOH A 23 923 49 HOH HOH . E 5 HOH A 24 924 15 HOH HOH . E 5 HOH A 25 925 26 HOH HOH . E 5 HOH A 26 926 5 HOH HOH . E 5 HOH A 27 927 23 HOH HOH . E 5 HOH A 28 928 37 HOH HOH . E 5 HOH A 29 929 22 HOH HOH . E 5 HOH A 30 930 25 HOH HOH . E 5 HOH A 31 931 12 HOH HOH . E 5 HOH A 32 932 34 HOH HOH . E 5 HOH A 33 933 48 HOH HOH . E 5 HOH A 34 934 29 HOH HOH . E 5 HOH A 35 935 10 HOH HOH . E 5 HOH A 36 936 30 HOH HOH . E 5 HOH A 37 937 27 HOH HOH . F 5 HOH B 1 301 39 HOH HOH . F 5 HOH B 2 302 40 HOH HOH . F 5 HOH B 3 303 7 HOH HOH . F 5 HOH B 4 304 4 HOH HOH . F 5 HOH B 5 305 31 HOH HOH . F 5 HOH B 6 306 41 HOH HOH . F 5 HOH B 7 307 9 HOH HOH . F 5 HOH B 8 308 19 HOH HOH . F 5 HOH B 9 309 13 HOH HOH . F 5 HOH B 10 310 36 HOH HOH . F 5 HOH B 11 311 8 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 0 _atom_site.Cartn_y -31.361 _atom_site.Cartn_z -36.257 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 64.08 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 200 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #