data_7P0V # _model_server_result.job_id JuJicoQlDCPFaLi23VVC5Q _model_server_result.datetime_utc '2024-11-26 11:05:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p0v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":800}' # _entry.id 7P0V # _exptl.entry_id 7P0V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7P0V _cell.length_a 42.993 _cell.length_b 62.722 _cell.length_c 138.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P0V _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OP1 C 13 B C 151 1_555 D NA NA . B NA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc2 B OP1 C 13 B C 151 1_555 D NA NA . B NA 200 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc3 D NA NA . B NA 200 1_555 F O HOH . B HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc4 D NA NA . B NA 200 1_555 F O HOH . B HOH 308 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? hydrog WATSON-CRICK hydrog1 B N1 G 1 B G 139 1_555 B N3 C 24 B C 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 G 1 B G 139 1_555 B O2 C 24 B C 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 G 1 B G 139 1_555 B N4 C 24 B C 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 G 2 B G 140 1_555 B N3 C 23 B C 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 G 2 B G 140 1_555 B O2 C 23 B C 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 G 2 B G 140 1_555 B N4 C 23 B C 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 G 3 B G 141 1_555 B N3 C 22 B C 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N2 G 3 B G 141 1_555 B O2 C 22 B C 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O6 G 3 B G 141 1_555 B N4 C 22 B C 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N1 G 4 B G 142 1_555 B N3 C 21 B C 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N2 G 4 B G 142 1_555 B O2 C 21 B C 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O6 G 4 B G 142 1_555 B N4 C 21 B C 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N1 A 5 B A 143 1_555 B N3 U 20 B U 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N6 A 5 B A 143 1_555 B O4 U 20 B U 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_18_PAIR hydrog15 B N3 C 6 B C 144 1_555 B N3 U 19 B U 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_18_PAIR hydrog16 B N4 C 6 B C 144 1_555 B O4 U 19 B U 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog17 B N3 U 7 B U 145 1_555 B O2 U 18 B U 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog18 B O4 U 7 B U 145 1_555 B N3 U 18 B U 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N1 G 8 B G 146 1_555 B N3 C 17 B C 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N2 G 8 B G 146 1_555 B O2 C 17 B C 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B O6 G 8 B G 146 1_555 B N4 C 17 B C 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N3 C 9 B C 147 1_555 B N1 G 16 B G 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N4 C 9 B C 147 1_555 B O6 G 16 B G 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B O2 C 9 B C 147 1_555 B N2 G 16 B G 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N1 G 10 B G 148 1_555 B N3 C 15 B C 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N2 G 10 B G 148 1_555 B O2 C 15 B C 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B O6 G 10 B G 148 1_555 B N4 C 15 B C 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-G MISPAIR' hydrog28 B O2 U 11 B U 149 1_555 B N1 G 14 B G 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 7P0V _atom_sites.fract_transf_matrix[1][1] 0.02326 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015943 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 1PE A 1 800 800 1PE 1PE . D 4 NA B 1 200 200 NA NA . E 5 HOH A 1 901 17 HOH HOH . E 5 HOH A 2 902 11 HOH HOH . E 5 HOH A 3 903 47 HOH HOH . E 5 HOH A 4 904 38 HOH HOH . E 5 HOH A 5 905 35 HOH HOH . E 5 HOH A 6 906 1 HOH HOH . E 5 HOH A 7 907 21 HOH HOH . E 5 HOH A 8 908 28 HOH HOH . E 5 HOH A 9 909 18 HOH HOH . E 5 HOH A 10 910 24 HOH HOH . E 5 HOH A 11 911 44 HOH HOH . E 5 HOH A 12 912 16 HOH HOH . E 5 HOH A 13 913 2 HOH HOH . E 5 HOH A 14 914 42 HOH HOH . E 5 HOH A 15 915 20 HOH HOH . E 5 HOH A 16 916 14 HOH HOH . E 5 HOH A 17 917 45 HOH HOH . E 5 HOH A 18 918 3 HOH HOH . E 5 HOH A 19 919 46 HOH HOH . E 5 HOH A 20 920 43 HOH HOH . E 5 HOH A 21 921 6 HOH HOH . E 5 HOH A 22 922 32 HOH HOH . E 5 HOH A 23 923 49 HOH HOH . E 5 HOH A 24 924 15 HOH HOH . E 5 HOH A 25 925 26 HOH HOH . E 5 HOH A 26 926 5 HOH HOH . E 5 HOH A 27 927 23 HOH HOH . E 5 HOH A 28 928 37 HOH HOH . E 5 HOH A 29 929 22 HOH HOH . E 5 HOH A 30 930 25 HOH HOH . E 5 HOH A 31 931 12 HOH HOH . E 5 HOH A 32 932 34 HOH HOH . E 5 HOH A 33 933 48 HOH HOH . E 5 HOH A 34 934 29 HOH HOH . E 5 HOH A 35 935 10 HOH HOH . E 5 HOH A 36 936 30 HOH HOH . E 5 HOH A 37 937 27 HOH HOH . F 5 HOH B 1 301 39 HOH HOH . F 5 HOH B 2 302 40 HOH HOH . F 5 HOH B 3 303 7 HOH HOH . F 5 HOH B 4 304 4 HOH HOH . F 5 HOH B 5 305 31 HOH HOH . F 5 HOH B 6 306 41 HOH HOH . F 5 HOH B 7 307 9 HOH HOH . F 5 HOH B 8 308 19 HOH HOH . F 5 HOH B 9 309 13 HOH HOH . F 5 HOH B 10 310 36 HOH HOH . F 5 HOH B 11 311 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . C 3 -12.687 4.034 -42.8 1 68.32 ? OH2 1PE 800 A 1 HETATM 2 C C12 1PE . . . C 3 -12.751 5.257 -43.53 1 64.29 ? C12 1PE 800 A 1 HETATM 3 C C22 1PE . . . C 3 -11.461 5.441 -44.328 1 60.78 ? C22 1PE 800 A 1 HETATM 4 O OH3 1PE . . . C 3 -11.154 4.223 -45.004 1 67.33 ? OH3 1PE 800 A 1 HETATM 5 C C13 1PE . . . C 3 -9.395 3.205 -46.35 1 65.76 ? C13 1PE 800 A 1 HETATM 6 C C23 1PE . . . C 3 -10.1 4.5 -45.927 1 70.14 ? C23 1PE 800 A 1 HETATM 7 O OH4 1PE . . . C 3 -10.273 2.083 -46.205 1 73.94 ? OH4 1PE 800 A 1 HETATM 8 C C14 1PE . . . C 3 -10.787 -0.144 -47.001 1 67.3 ? C14 1PE 800 A 1 HETATM 9 C C24 1PE . . . C 3 -9.823 1.045 -47.084 1 69.25 ? C24 1PE 800 A 1 HETATM 10 O OH5 1PE . . . C 3 -11.388 -0.198 -45.704 1 57.65 ? OH5 1PE 800 A 1 HETATM 11 C C15 1PE . . . C 3 -13.158 -1.365 -44.507 1 56.13 ? C15 1PE 800 A 1 HETATM 12 C C25 1PE . . . C 3 -12.656 -0.834 -45.854 1 59.88 ? C25 1PE 800 A 1 HETATM 13 O OH6 1PE . . . C 3 -13.115 -0.364 -43.488 1 56.02 ? OH6 1PE 800 A 1 HETATM 14 C C16 1PE . . . C 3 -13.725 0.023 -41.138 1 57.86 ? C16 1PE 800 A 1 HETATM 15 C C26 1PE . . . C 3 -13.556 -0.982 -42.281 1 53.36 ? C26 1PE 800 A 1 HETATM 16 O OH7 1PE . . . C 3 -13.063 1.266 -41.407 1 61.92 ? OH7 1PE 800 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #