data_7P11 # _model_server_result.job_id 8jw78CUzJZokdhMUnkmH8Q _model_server_result.datetime_utc '2024-12-07 23:43:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p11 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 7P11 # _exptl.entry_id 7P11 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 331.32 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[[(2~{R},3~{R},4~{R})-2-(hydroxymethyl)-3-oxidanyl-3,4-dihydro-2~{H}-pyran-4-yl]oxymethyl]quinoline-7-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7P11 _cell.length_a 54.62 _cell.length_b 61.394 _cell.length_c 85.242 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P11 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # _chem_comp.formula 'C17 H17 N O6' _chem_comp.formula_weight 331.32 _chem_comp.id 5KM _chem_comp.mon_nstd_flag . _chem_comp.name '2-[[(2~{R},3~{R},4~{R})-2-(hydroxymethyl)-3-oxidanyl-3,4-dihydro-2~{H}-pyran-4-yl]oxymethyl]quinoline-7-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 5KM doub 1 n y C8 C7 5KM sing 2 n y C9 C10 5KM sing 3 n y C13 C7 5KM doub 4 n y C13 C14 5KM sing 5 n y C7 C6 5KM sing 6 n y C10 C11 5KM sing 7 n n C10 C12 5KM doub 8 n y O3 C11 5KM doub 9 n n C14 C5 5KM doub 10 n y C11 O4 5KM sing 11 n n C6 C12 5KM sing 12 n y C6 N 5KM doub 13 n y C5 N 5KM sing 14 n y C5 C4 5KM sing 15 n n O2 C4 5KM sing 16 n n O2 C3 5KM sing 17 n n O1 C2 5KM sing 18 n n C2 C3 5KM sing 19 n n C2 C1 5KM sing 20 n n C O 5KM sing 21 n n C C1 5KM sing 22 n n C3 C15 5KM sing 23 n n C1 O5 5KM sing 24 n n O5 C16 5KM sing 25 n n C15 C16 5KM doub 26 n n C1 H1 5KM sing 27 n n C2 H2 5KM sing 28 n n C3 H3 5KM sing 29 n n C4 H4 5KM sing 30 n n C4 H5 5KM sing 31 n n O4 H6 5KM sing 32 n n C12 H7 5KM sing 33 n n C9 H8 5KM sing 34 n n C8 H9 5KM sing 35 n n C13 H10 5KM sing 36 n n C14 H11 5KM sing 37 n n O1 H12 5KM sing 38 n n C15 H13 5KM sing 39 n n C16 H14 5KM sing 40 n n C H15 5KM sing 41 n n C H16 5KM sing 42 n n O H17 5KM sing 43 n n # _atom_sites.entry_id 7P11 _atom_sites.fract_transf_matrix[1][1] 0.018308 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016288 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 5KM A 1 201 194 5KM SDF . D 4 CL A 1 202 1 CL CL . E 3 5KM B 1 201 194 5KM SDF . F 5 HOH A 1 301 92 HOH HOH . F 5 HOH A 2 302 205 HOH HOH . F 5 HOH A 3 303 346 HOH HOH . F 5 HOH A 4 304 7 HOH HOH . F 5 HOH A 5 305 278 HOH HOH . F 5 HOH A 6 306 52 HOH HOH . F 5 HOH A 7 307 15 HOH HOH . F 5 HOH A 8 308 148 HOH HOH . F 5 HOH A 9 309 239 HOH HOH . F 5 HOH A 10 310 25 HOH HOH . F 5 HOH A 11 311 42 HOH HOH . F 5 HOH A 12 312 33 HOH HOH . F 5 HOH A 13 313 83 HOH HOH . F 5 HOH A 14 314 365 HOH HOH . F 5 HOH A 15 315 20 HOH HOH . F 5 HOH A 16 316 191 HOH HOH . F 5 HOH A 17 317 182 HOH HOH . F 5 HOH A 18 318 112 HOH HOH . F 5 HOH A 19 319 228 HOH HOH . F 5 HOH A 20 320 393 HOH HOH . F 5 HOH A 21 321 34 HOH HOH . F 5 HOH A 22 322 150 HOH HOH . F 5 HOH A 23 323 24 HOH HOH . F 5 HOH A 24 324 36 HOH HOH . F 5 HOH A 25 325 126 HOH HOH . F 5 HOH A 26 326 167 HOH HOH . F 5 HOH A 27 327 60 HOH HOH . F 5 HOH A 28 328 16 HOH HOH . F 5 HOH A 29 329 94 HOH HOH . F 5 HOH A 30 330 23 HOH HOH . F 5 HOH A 31 331 22 HOH HOH . F 5 HOH A 32 332 30 HOH HOH . F 5 HOH A 33 333 138 HOH HOH . F 5 HOH A 34 334 359 HOH HOH . F 5 HOH A 35 335 140 HOH HOH . F 5 HOH A 36 336 39 HOH HOH . F 5 HOH A 37 337 35 HOH HOH . F 5 HOH A 38 338 41 HOH HOH . F 5 HOH A 39 339 47 HOH HOH . F 5 HOH A 40 340 49 HOH HOH . F 5 HOH A 41 341 396 HOH HOH . F 5 HOH A 42 342 237 HOH HOH . F 5 HOH A 43 343 56 HOH HOH . F 5 HOH A 44 344 97 HOH HOH . F 5 HOH A 45 345 87 HOH HOH . F 5 HOH A 46 346 111 HOH HOH . F 5 HOH A 47 347 40 HOH HOH . F 5 HOH A 48 348 75 HOH HOH . F 5 HOH A 49 349 38 HOH HOH . F 5 HOH A 50 350 13 HOH HOH . F 5 HOH A 51 351 401 HOH HOH . F 5 HOH A 52 352 226 HOH HOH . F 5 HOH A 53 353 142 HOH HOH . F 5 HOH A 54 354 144 HOH HOH . F 5 HOH A 55 355 61 HOH HOH . F 5 HOH A 56 356 12 HOH HOH . F 5 HOH A 57 357 106 HOH HOH . F 5 HOH A 58 358 156 HOH HOH . F 5 HOH A 59 359 164 HOH HOH . F 5 HOH A 60 360 290 HOH HOH . F 5 HOH A 61 361 54 HOH HOH . F 5 HOH A 62 362 157 HOH HOH . F 5 HOH A 63 363 129 HOH HOH . F 5 HOH A 64 364 136 HOH HOH . F 5 HOH A 65 365 385 HOH HOH . F 5 HOH A 66 366 312 HOH HOH . F 5 HOH A 67 367 274 HOH HOH . F 5 HOH A 68 368 252 HOH HOH . F 5 HOH A 69 369 332 HOH HOH . F 5 HOH A 70 370 219 HOH HOH . F 5 HOH A 71 371 132 HOH HOH . F 5 HOH A 72 372 289 HOH HOH . F 5 HOH A 73 373 246 HOH HOH . F 5 HOH A 74 374 234 HOH HOH . F 5 HOH A 75 375 171 HOH HOH . F 5 HOH A 76 376 166 HOH HOH . F 5 HOH A 77 377 305 HOH HOH . F 5 HOH A 78 378 390 HOH HOH . F 5 HOH A 79 379 123 HOH HOH . F 5 HOH A 80 380 74 HOH HOH . F 5 HOH A 81 381 279 HOH HOH . F 5 HOH A 82 382 176 HOH HOH . F 5 HOH A 83 383 275 HOH HOH . F 5 HOH A 84 384 372 HOH HOH . F 5 HOH A 85 385 261 HOH HOH . F 5 HOH A 86 386 306 HOH HOH . G 5 HOH B 1 301 227 HOH HOH . G 5 HOH B 2 302 399 HOH HOH . G 5 HOH B 3 303 161 HOH HOH . G 5 HOH B 4 304 265 HOH HOH . G 5 HOH B 5 305 251 HOH HOH . G 5 HOH B 6 306 209 HOH HOH . G 5 HOH B 7 307 371 HOH HOH . G 5 HOH B 8 308 244 HOH HOH . G 5 HOH B 9 309 79 HOH HOH . G 5 HOH B 10 310 72 HOH HOH . G 5 HOH B 11 311 90 HOH HOH . G 5 HOH B 12 312 300 HOH HOH . G 5 HOH B 13 313 118 HOH HOH . G 5 HOH B 14 314 53 HOH HOH . G 5 HOH B 15 315 326 HOH HOH . G 5 HOH B 16 316 113 HOH HOH . G 5 HOH B 17 317 350 HOH HOH . G 5 HOH B 18 318 21 HOH HOH . G 5 HOH B 19 319 28 HOH HOH . G 5 HOH B 20 320 10 HOH HOH . G 5 HOH B 21 321 398 HOH HOH . G 5 HOH B 22 322 50 HOH HOH . G 5 HOH B 23 323 46 HOH HOH . G 5 HOH B 24 324 26 HOH HOH . G 5 HOH B 25 325 295 HOH HOH . G 5 HOH B 26 326 51 HOH HOH . G 5 HOH B 27 327 143 HOH HOH . G 5 HOH B 28 328 402 HOH HOH . G 5 HOH B 29 329 125 HOH HOH . G 5 HOH B 30 330 70 HOH HOH . G 5 HOH B 31 331 6 HOH HOH . G 5 HOH B 32 332 145 HOH HOH . G 5 HOH B 33 333 17 HOH HOH . G 5 HOH B 34 334 65 HOH HOH . G 5 HOH B 35 335 107 HOH HOH . G 5 HOH B 36 336 66 HOH HOH . G 5 HOH B 37 337 67 HOH HOH . G 5 HOH B 38 338 14 HOH HOH . G 5 HOH B 39 339 288 HOH HOH . G 5 HOH B 40 340 32 HOH HOH . G 5 HOH B 41 341 104 HOH HOH . G 5 HOH B 42 342 84 HOH HOH . G 5 HOH B 43 343 64 HOH HOH . G 5 HOH B 44 344 9 HOH HOH . G 5 HOH B 45 345 241 HOH HOH . G 5 HOH B 46 346 29 HOH HOH . G 5 HOH B 47 347 48 HOH HOH . G 5 HOH B 48 348 178 HOH HOH . G 5 HOH B 49 349 63 HOH HOH . G 5 HOH B 50 350 394 HOH HOH . G 5 HOH B 51 351 151 HOH HOH . G 5 HOH B 52 352 152 HOH HOH . G 5 HOH B 53 353 69 HOH HOH . G 5 HOH B 54 354 215 HOH HOH . G 5 HOH B 55 355 338 HOH HOH . G 5 HOH B 56 356 299 HOH HOH . G 5 HOH B 57 357 180 HOH HOH . G 5 HOH B 58 358 45 HOH HOH . G 5 HOH B 59 359 188 HOH HOH . G 5 HOH B 60 360 59 HOH HOH . G 5 HOH B 61 361 303 HOH HOH . G 5 HOH B 62 362 397 HOH HOH . G 5 HOH B 63 363 358 HOH HOH . G 5 HOH B 64 364 196 HOH HOH . G 5 HOH B 65 365 44 HOH HOH . G 5 HOH B 66 366 114 HOH HOH . G 5 HOH B 67 367 149 HOH HOH . G 5 HOH B 68 368 197 HOH HOH . G 5 HOH B 69 369 202 HOH HOH . G 5 HOH B 70 370 207 HOH HOH . G 5 HOH B 71 371 400 HOH HOH . G 5 HOH B 72 372 11 HOH HOH . G 5 HOH B 73 373 380 HOH HOH . G 5 HOH B 74 374 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5KM . . . E 3 34.892 -6.768 -27.54 1 59.47 ? C1 5KM 201 B 1 HETATM 2 C C2 5KM . . . E 3 36.414 -6.816 -27.341 1 57.21 ? C2 5KM 201 B 1 HETATM 3 C C3 5KM . . . E 3 36.962 -8.048 -28.006 1 59.24 ? C3 5KM 201 B 1 HETATM 4 C C4 5KM . . . E 3 39.02 -9.004 -28.379 1 65.48 ? C4 5KM 201 B 1 HETATM 5 C C5 5KM . . . E 3 40.481 -8.802 -28.123 1 65.99 ? C5 5KM 201 B 1 HETATM 6 C C6 5KM . . . E 3 42.52 -8.127 -28.893 1 68.44 ? C6 5KM 201 B 1 HETATM 7 C C7 5KM . . . E 3 43.185 -8.448 -27.574 1 64.49 ? C7 5KM 201 B 1 HETATM 8 O O4 5KM . . . E 3 44.697 -5.83 -31.293 1 64.07 ? O4 5KM 201 B 1 HETATM 9 C C11 5KM . . . E 3 45.248 -6.861 -30.894 1 66.31 ? C11 5KM 201 B 1 HETATM 10 O O3 5KM . . . E 3 46.322 -7.387 -31.469 1 71.14 ? O3 5KM 201 B 1 HETATM 11 C C10 5KM . . . E 3 44.619 -7.461 -29.721 1 64.81 ? C10 5KM 201 B 1 HETATM 12 C C12 5KM . . . E 3 43.269 -7.629 -29.924 1 67.11 ? C12 5KM 201 B 1 HETATM 13 N N 5KM . . . E 3 41.209 -8.31 -29.13 1 68.48 ? N 5KM 201 B 1 HETATM 14 C C9 5KM . . . E 3 45.286 -7.735 -28.506 1 64.18 ? C9 5KM 201 B 1 HETATM 15 C C8 5KM . . . E 3 44.566 -8.237 -27.406 1 63.1 ? C8 5KM 201 B 1 HETATM 16 C C13 5KM . . . E 3 42.381 -8.949 -26.579 1 63.6 ? C13 5KM 201 B 1 HETATM 17 C C14 5KM . . . E 3 41.028 -9.099 -26.869 1 65.16 ? C14 5KM 201 B 1 HETATM 18 O O2 5KM . . . E 3 38.339 -7.81 -28.026 1 60.28 ? O2 5KM 201 B 1 HETATM 19 O O1 5KM . . . E 3 37.09 -5.698 -27.897 1 54.13 ? O1 5KM 201 B 1 HETATM 20 C C15 5KM . . . E 3 36.437 -8.219 -29.426 1 60.74 ? C15 5KM 201 B 1 HETATM 21 C C16 5KM . . . E 3 35.302 -7.651 -29.83 1 60.98 ? C16 5KM 201 B 1 HETATM 22 O O5 5KM . . . E 3 34.515 -6.841 -28.929 1 60.52 ? O5 5KM 201 B 1 HETATM 23 C C 5KM . . . E 3 34.317 -5.516 -26.89 1 58.1 ? C 5KM 201 B 1 HETATM 24 O O 5KM . . . E 3 33.026 -5.843 -26.388 1 60.43 ? O 5KM 201 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #