data_7P17
#
_model_server_result.job_id            AOx8JkGr2U0NunYW3m70PQ 
_model_server_result.datetime_utc      '2024-11-12 20:56:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7p17 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":409}' 
#
_entry.id    7P17 
#
_exptl.entry_id    7P17 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          13 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7P17 
_cell.length_a            102.5 
_cell.length_b            102.5 
_cell.length_c            237.4 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7P17 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    'P 4n 2n' 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      13 
_struct_asym.id                             V 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 T FE FE . M FE 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 T FE FE . M FE 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc3 C NE2 HIS 219 M HIS 219 1_555 T FE FE . M FE 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc4 C OE1 GLU 234 M GLU 234 1_555 T FE FE . M FE 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc5 C OE2 GLU 234 M GLU 234 1_555 T FE FE . M FE 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc6 C NE2 HIS 266 M HIS 266 1_555 T FE FE . M FE 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 377 n n 
C1 C2 EDO sing 378 n n 
C1 H11 EDO sing 379 n n 
C1 H12 EDO sing 380 n n 
O1 HO1 EDO sing 381 n n 
C2 O2 EDO sing 382 n n 
C2 H21 EDO sing 383 n n 
C2 H22 EDO sing 384 n n 
O2 HO2 EDO sing 385 n n 
#
_atom_sites.entry_id                     7P17 
_atom_sites.fract_transf_matrix[1][1]    0.009756 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009756 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004212 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 MYS H 1 401 401 MYS UNL . 
E 5 LDA H 1 402 702 LDA LDA . 
F 4 MYS H 1 403 801 MYS UNL . 
G 6 OLC L 1 501 501 OLC OLC . 
H 4 MYS L 1 502 601 MYS UNL . 
I 4 MYS L 1 503 701 MYS UNL . 
J 7 BCL L 1 504 302 BCL BCL . 
K 7 BCL L 1 505 304 BCL BCL . 
L 8 BPH L 1 506 401 BPH BPH . 
M 8 BPH L 1 507 402 BPH BPH . 
N 9 NKP M 1 401 301 NKP NKP . 
O 10 U10 M 1 402 501 U10 U10 . 
P 9 NKP M 1 403 601 NKP NKP . 
Q 11 SPN M 1 404 600 SPN SPN . 
R 7 BCL M 1 405 301 BCL BCL . 
S 7 BCL M 1 406 303 BCL BCL . 
T 12 FE M 1 407 500 FE FE . 
U 5 LDA M 1 408 701 LDA LDA . 
V 13 EDO M 1 409 54 EDO EDO . 
W 14 HOH H 1 501 106 HOH HOH . 
W 14 HOH H 2 502 90 HOH HOH . 
W 14 HOH H 3 503 24 HOH HOH . 
W 14 HOH H 4 504 71 HOH HOH . 
W 14 HOH H 5 505 150 HOH HOH . 
W 14 HOH H 6 506 49 HOH HOH . 
W 14 HOH H 7 507 17 HOH HOH . 
W 14 HOH H 8 508 39 HOH HOH . 
W 14 HOH H 9 509 132 HOH HOH . 
W 14 HOH H 10 510 120 HOH HOH . 
W 14 HOH H 11 511 19 HOH HOH . 
W 14 HOH H 12 512 116 HOH HOH . 
W 14 HOH H 13 513 60 HOH HOH . 
W 14 HOH H 14 514 22 HOH HOH . 
W 14 HOH H 15 515 52 HOH HOH . 
W 14 HOH H 16 516 94 HOH HOH . 
W 14 HOH H 17 517 35 HOH HOH . 
W 14 HOH H 18 518 28 HOH HOH . 
W 14 HOH H 19 519 10 HOH HOH . 
W 14 HOH H 20 520 148 HOH HOH . 
W 14 HOH H 21 521 78 HOH HOH . 
W 14 HOH H 22 522 138 HOH HOH . 
W 14 HOH H 23 523 93 HOH HOH . 
W 14 HOH H 24 524 100 HOH HOH . 
W 14 HOH H 25 525 74 HOH HOH . 
W 14 HOH H 26 526 56 HOH HOH . 
W 14 HOH H 27 527 57 HOH HOH . 
W 14 HOH H 28 528 122 HOH HOH . 
W 14 HOH H 29 529 136 HOH HOH . 
W 14 HOH H 30 530 111 HOH HOH . 
W 14 HOH H 31 531 1 HOH HOH . 
W 14 HOH H 32 532 75 HOH HOH . 
W 14 HOH H 33 533 55 HOH HOH . 
W 14 HOH H 34 534 79 HOH HOH . 
W 14 HOH H 35 535 85 HOH HOH . 
W 14 HOH H 36 536 141 HOH HOH . 
W 14 HOH H 37 537 65 HOH HOH . 
W 14 HOH H 38 538 16 HOH HOH . 
W 14 HOH H 39 539 53 HOH HOH . 
W 14 HOH H 40 540 149 HOH HOH . 
W 14 HOH H 41 541 36 HOH HOH . 
W 14 HOH H 42 542 59 HOH HOH . 
W 14 HOH H 43 543 45 HOH HOH . 
W 14 HOH H 44 544 130 HOH HOH . 
W 14 HOH H 45 545 86 HOH HOH . 
W 14 HOH H 46 546 20 HOH HOH . 
W 14 HOH H 47 547 25 HOH HOH . 
W 14 HOH H 48 548 54 HOH HOH . 
W 14 HOH H 49 549 114 HOH HOH . 
W 14 HOH H 50 550 81 HOH HOH . 
W 14 HOH H 51 551 30 HOH HOH . 
W 14 HOH H 52 552 131 HOH HOH . 
W 14 HOH H 53 553 144 HOH HOH . 
W 14 HOH H 54 554 98 HOH HOH . 
W 14 HOH H 55 555 107 HOH HOH . 
X 14 HOH L 1 601 128 HOH HOH . 
X 14 HOH L 2 602 108 HOH HOH . 
X 14 HOH L 3 603 42 HOH HOH . 
X 14 HOH L 4 604 5 HOH HOH . 
X 14 HOH L 5 605 76 HOH HOH . 
X 14 HOH L 6 606 33 HOH HOH . 
X 14 HOH L 7 607 91 HOH HOH . 
X 14 HOH L 8 608 83 HOH HOH . 
X 14 HOH L 9 609 89 HOH HOH . 
X 14 HOH L 10 610 151 HOH HOH . 
X 14 HOH L 11 611 9 HOH HOH . 
X 14 HOH L 12 612 96 HOH HOH . 
X 14 HOH L 13 613 48 HOH HOH . 
X 14 HOH L 14 614 109 HOH HOH . 
X 14 HOH L 15 615 15 HOH HOH . 
X 14 HOH L 16 616 69 HOH HOH . 
X 14 HOH L 17 617 12 HOH HOH . 
X 14 HOH L 18 618 61 HOH HOH . 
X 14 HOH L 19 619 29 HOH HOH . 
X 14 HOH L 20 620 6 HOH HOH . 
X 14 HOH L 21 621 64 HOH HOH . 
X 14 HOH L 22 622 4 HOH HOH . 
X 14 HOH L 23 623 147 HOH HOH . 
X 14 HOH L 24 624 34 HOH HOH . 
X 14 HOH L 25 625 41 HOH HOH . 
X 14 HOH L 26 626 43 HOH HOH . 
X 14 HOH L 27 627 3 HOH HOH . 
X 14 HOH L 28 628 143 HOH HOH . 
X 14 HOH L 29 629 95 HOH HOH . 
X 14 HOH L 30 630 2 HOH HOH . 
X 14 HOH L 31 631 125 HOH HOH . 
X 14 HOH L 32 632 117 HOH HOH . 
X 14 HOH L 33 633 103 HOH HOH . 
X 14 HOH L 34 634 84 HOH HOH . 
X 14 HOH L 35 635 129 HOH HOH . 
X 14 HOH L 36 636 121 HOH HOH . 
X 14 HOH L 37 637 8 HOH HOH . 
X 14 HOH L 38 638 13 HOH HOH . 
X 14 HOH L 39 639 123 HOH HOH . 
X 14 HOH L 40 640 127 HOH HOH . 
X 14 HOH L 41 641 23 HOH HOH . 
X 14 HOH L 42 642 126 HOH HOH . 
X 14 HOH L 43 643 140 HOH HOH . 
X 14 HOH L 44 644 105 HOH HOH . 
X 14 HOH L 45 645 77 HOH HOH . 
X 14 HOH L 46 646 115 HOH HOH . 
X 14 HOH L 47 647 124 HOH HOH . 
Y 14 HOH M 1 501 97 HOH HOH . 
Y 14 HOH M 2 502 73 HOH HOH . 
Y 14 HOH M 3 503 44 HOH HOH . 
Y 14 HOH M 4 504 38 HOH HOH . 
Y 14 HOH M 5 505 104 HOH HOH . 
Y 14 HOH M 6 506 14 HOH HOH . 
Y 14 HOH M 7 507 134 HOH HOH . 
Y 14 HOH M 8 508 7 HOH HOH . 
Y 14 HOH M 9 509 68 HOH HOH . 
Y 14 HOH M 10 510 18 HOH HOH . 
Y 14 HOH M 11 511 99 HOH HOH . 
Y 14 HOH M 12 512 67 HOH HOH . 
Y 14 HOH M 13 513 47 HOH HOH . 
Y 14 HOH M 14 514 133 HOH HOH . 
Y 14 HOH M 15 515 40 HOH HOH . 
Y 14 HOH M 16 516 137 HOH HOH . 
Y 14 HOH M 17 517 46 HOH HOH . 
Y 14 HOH M 18 518 145 HOH HOH . 
Y 14 HOH M 19 519 70 HOH HOH . 
Y 14 HOH M 20 520 63 HOH HOH . 
Y 14 HOH M 21 521 37 HOH HOH . 
Y 14 HOH M 22 522 80 HOH HOH . 
Y 14 HOH M 23 523 119 HOH HOH . 
Y 14 HOH M 24 524 26 HOH HOH . 
Y 14 HOH M 25 525 92 HOH HOH . 
Y 14 HOH M 26 526 113 HOH HOH . 
Y 14 HOH M 27 527 135 HOH HOH . 
Y 14 HOH M 28 528 87 HOH HOH . 
Y 14 HOH M 29 529 110 HOH HOH . 
Y 14 HOH M 30 530 66 HOH HOH . 
Y 14 HOH M 31 531 118 HOH HOH . 
Y 14 HOH M 32 532 27 HOH HOH . 
Y 14 HOH M 33 533 50 HOH HOH . 
Y 14 HOH M 34 534 102 HOH HOH . 
Y 14 HOH M 35 535 32 HOH HOH . 
Y 14 HOH M 36 536 31 HOH HOH . 
Y 14 HOH M 37 537 21 HOH HOH . 
Y 14 HOH M 38 538 11 HOH HOH . 
Y 14 HOH M 39 539 51 HOH HOH . 
Y 14 HOH M 40 540 142 HOH HOH . 
Y 14 HOH M 41 541 62 HOH HOH . 
Y 14 HOH M 42 542 82 HOH HOH . 
Y 14 HOH M 43 543 101 HOH HOH . 
Y 14 HOH M 44 544 146 HOH HOH . 
Y 14 HOH M 45 545 152 HOH HOH . 
Y 14 HOH M 46 546 72 HOH HOH . 
Y 14 HOH M 47 547 58 HOH HOH . 
Y 14 HOH M 48 548 112 HOH HOH . 
Y 14 HOH M 49 549 88 HOH HOH . 
Y 14 HOH M 50 550 139 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . V 13 -8.919 -36.178 -55.89 1 64.55 ? C1 EDO 409 M 1 
HETATM 2 O O1 EDO . . . V 13 -9.112 -35.267 -54.801 1 67.81 ? O1 EDO 409 M 1 
HETATM 3 C C2 EDO . . . V 13 -9.486 -37.535 -55.502 1 58.8 ? C2 EDO 409 M 1 
HETATM 4 O O2 EDO . . . V 13 -8.808 -37.991 -54.33 1 54.84 ? O2 EDO 409 M 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           398 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#