data_7P17 # _model_server_result.job_id rlKnWicOphgawFqoJ4iWag _model_server_result.datetime_utc '2024-11-12 20:53:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 7P17 # _exptl.entry_id 7P17 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7P17 _cell.length_a 102.5 _cell.length_b 102.5 _cell.length_c 237.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall 'P 4n 2n' _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 T FE FE . M FE 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 T FE FE . M FE 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc3 C NE2 HIS 219 M HIS 219 1_555 T FE FE . M FE 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc4 C OE1 GLU 234 M GLU 234 1_555 T FE FE . M FE 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc5 C OE2 GLU 234 M GLU 234 1_555 T FE FE . M FE 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc6 C NE2 HIS 266 M HIS 266 1_555 T FE FE . M FE 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 701 n n C10 C9 OLC doub 702 n n C10 C11 OLC sing 703 n n C9 C8 OLC sing 704 n n C17 C16 OLC sing 705 z n C11 C12 OLC sing 706 n n C8 C7 OLC sing 707 n n C24 C22 OLC sing 708 n n C24 O25 OLC sing 709 n n C16 C15 OLC sing 710 n n C12 C13 OLC sing 711 n n C7 C6 OLC sing 712 n n C15 C14 OLC sing 713 n n C13 C14 OLC sing 714 n n C6 C5 OLC sing 715 n n C5 C4 OLC sing 716 n n C4 C3 OLC sing 717 n n C3 C2 OLC sing 718 n n C2 C1 OLC sing 719 n n C21 C22 OLC sing 720 n n C21 O20 OLC sing 721 n n C1 O19 OLC doub 722 n n C1 O20 OLC sing 723 n n C22 O23 OLC sing 724 n n C18 H18 OLC sing 725 n n C18 H18A OLC sing 726 n n C18 H18B OLC sing 727 n n C10 H10 OLC sing 728 n n C9 H9 OLC sing 729 n n C17 H17 OLC sing 730 n n C17 H17A OLC sing 731 n n C11 H11 OLC sing 732 n n C11 H11A OLC sing 733 n n C8 H8 OLC sing 734 n n C8 H8A OLC sing 735 n n C24 H24 OLC sing 736 n n C24 H24A OLC sing 737 n n C16 H16 OLC sing 738 n n C16 H16A OLC sing 739 n n C12 H12 OLC sing 740 n n C12 H12A OLC sing 741 n n C7 H7 OLC sing 742 n n C7 H7A OLC sing 743 n n C15 H15 OLC sing 744 n n C15 H15A OLC sing 745 n n C13 H13 OLC sing 746 n n C13 H13A OLC sing 747 n n C6 H6 OLC sing 748 n n C6 H6A OLC sing 749 n n C14 H14 OLC sing 750 n n C14 H14A OLC sing 751 n n C5 H5 OLC sing 752 n n C5 H5A OLC sing 753 n n C4 H4 OLC sing 754 n n C4 H4A OLC sing 755 n n C3 H3 OLC sing 756 n n C3 H3A OLC sing 757 n n C2 H2 OLC sing 758 n n C2 H2A OLC sing 759 n n C21 H21 OLC sing 760 n n C21 H21A OLC sing 761 n n C22 H22 OLC sing 762 n n O25 HO25 OLC sing 763 n n O23 HO23 OLC sing 764 n n # _atom_sites.entry_id 7P17 _atom_sites.fract_transf_matrix[1][1] 0.009756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MYS H 1 401 401 MYS UNL . E 5 LDA H 1 402 702 LDA LDA . F 4 MYS H 1 403 801 MYS UNL . G 6 OLC L 1 501 501 OLC OLC . H 4 MYS L 1 502 601 MYS UNL . I 4 MYS L 1 503 701 MYS UNL . J 7 BCL L 1 504 302 BCL BCL . K 7 BCL L 1 505 304 BCL BCL . L 8 BPH L 1 506 401 BPH BPH . M 8 BPH L 1 507 402 BPH BPH . N 9 NKP M 1 401 301 NKP NKP . O 10 U10 M 1 402 501 U10 U10 . P 9 NKP M 1 403 601 NKP NKP . Q 11 SPN M 1 404 600 SPN SPN . R 7 BCL M 1 405 301 BCL BCL . S 7 BCL M 1 406 303 BCL BCL . T 12 FE M 1 407 500 FE FE . U 5 LDA M 1 408 701 LDA LDA . V 13 EDO M 1 409 54 EDO EDO . W 14 HOH H 1 501 106 HOH HOH . W 14 HOH H 2 502 90 HOH HOH . W 14 HOH H 3 503 24 HOH HOH . W 14 HOH H 4 504 71 HOH HOH . W 14 HOH H 5 505 150 HOH HOH . W 14 HOH H 6 506 49 HOH HOH . W 14 HOH H 7 507 17 HOH HOH . W 14 HOH H 8 508 39 HOH HOH . W 14 HOH H 9 509 132 HOH HOH . W 14 HOH H 10 510 120 HOH HOH . W 14 HOH H 11 511 19 HOH HOH . W 14 HOH H 12 512 116 HOH HOH . W 14 HOH H 13 513 60 HOH HOH . W 14 HOH H 14 514 22 HOH HOH . W 14 HOH H 15 515 52 HOH HOH . W 14 HOH H 16 516 94 HOH HOH . W 14 HOH H 17 517 35 HOH HOH . W 14 HOH H 18 518 28 HOH HOH . W 14 HOH H 19 519 10 HOH HOH . W 14 HOH H 20 520 148 HOH HOH . W 14 HOH H 21 521 78 HOH HOH . W 14 HOH H 22 522 138 HOH HOH . W 14 HOH H 23 523 93 HOH HOH . W 14 HOH H 24 524 100 HOH HOH . W 14 HOH H 25 525 74 HOH HOH . W 14 HOH H 26 526 56 HOH HOH . W 14 HOH H 27 527 57 HOH HOH . W 14 HOH H 28 528 122 HOH HOH . W 14 HOH H 29 529 136 HOH HOH . W 14 HOH H 30 530 111 HOH HOH . W 14 HOH H 31 531 1 HOH HOH . W 14 HOH H 32 532 75 HOH HOH . W 14 HOH H 33 533 55 HOH HOH . W 14 HOH H 34 534 79 HOH HOH . W 14 HOH H 35 535 85 HOH HOH . W 14 HOH H 36 536 141 HOH HOH . W 14 HOH H 37 537 65 HOH HOH . W 14 HOH H 38 538 16 HOH HOH . W 14 HOH H 39 539 53 HOH HOH . W 14 HOH H 40 540 149 HOH HOH . W 14 HOH H 41 541 36 HOH HOH . W 14 HOH H 42 542 59 HOH HOH . W 14 HOH H 43 543 45 HOH HOH . W 14 HOH H 44 544 130 HOH HOH . W 14 HOH H 45 545 86 HOH HOH . W 14 HOH H 46 546 20 HOH HOH . W 14 HOH H 47 547 25 HOH HOH . W 14 HOH H 48 548 54 HOH HOH . W 14 HOH H 49 549 114 HOH HOH . W 14 HOH H 50 550 81 HOH HOH . W 14 HOH H 51 551 30 HOH HOH . W 14 HOH H 52 552 131 HOH HOH . W 14 HOH H 53 553 144 HOH HOH . W 14 HOH H 54 554 98 HOH HOH . W 14 HOH H 55 555 107 HOH HOH . X 14 HOH L 1 601 128 HOH HOH . X 14 HOH L 2 602 108 HOH HOH . X 14 HOH L 3 603 42 HOH HOH . X 14 HOH L 4 604 5 HOH HOH . X 14 HOH L 5 605 76 HOH HOH . X 14 HOH L 6 606 33 HOH HOH . X 14 HOH L 7 607 91 HOH HOH . X 14 HOH L 8 608 83 HOH HOH . X 14 HOH L 9 609 89 HOH HOH . X 14 HOH L 10 610 151 HOH HOH . X 14 HOH L 11 611 9 HOH HOH . X 14 HOH L 12 612 96 HOH HOH . X 14 HOH L 13 613 48 HOH HOH . X 14 HOH L 14 614 109 HOH HOH . X 14 HOH L 15 615 15 HOH HOH . X 14 HOH L 16 616 69 HOH HOH . X 14 HOH L 17 617 12 HOH HOH . X 14 HOH L 18 618 61 HOH HOH . X 14 HOH L 19 619 29 HOH HOH . X 14 HOH L 20 620 6 HOH HOH . X 14 HOH L 21 621 64 HOH HOH . X 14 HOH L 22 622 4 HOH HOH . X 14 HOH L 23 623 147 HOH HOH . X 14 HOH L 24 624 34 HOH HOH . X 14 HOH L 25 625 41 HOH HOH . X 14 HOH L 26 626 43 HOH HOH . X 14 HOH L 27 627 3 HOH HOH . X 14 HOH L 28 628 143 HOH HOH . X 14 HOH L 29 629 95 HOH HOH . X 14 HOH L 30 630 2 HOH HOH . X 14 HOH L 31 631 125 HOH HOH . X 14 HOH L 32 632 117 HOH HOH . X 14 HOH L 33 633 103 HOH HOH . X 14 HOH L 34 634 84 HOH HOH . X 14 HOH L 35 635 129 HOH HOH . X 14 HOH L 36 636 121 HOH HOH . X 14 HOH L 37 637 8 HOH HOH . X 14 HOH L 38 638 13 HOH HOH . X 14 HOH L 39 639 123 HOH HOH . X 14 HOH L 40 640 127 HOH HOH . X 14 HOH L 41 641 23 HOH HOH . X 14 HOH L 42 642 126 HOH HOH . X 14 HOH L 43 643 140 HOH HOH . X 14 HOH L 44 644 105 HOH HOH . X 14 HOH L 45 645 77 HOH HOH . X 14 HOH L 46 646 115 HOH HOH . X 14 HOH L 47 647 124 HOH HOH . Y 14 HOH M 1 501 97 HOH HOH . Y 14 HOH M 2 502 73 HOH HOH . Y 14 HOH M 3 503 44 HOH HOH . Y 14 HOH M 4 504 38 HOH HOH . Y 14 HOH M 5 505 104 HOH HOH . Y 14 HOH M 6 506 14 HOH HOH . Y 14 HOH M 7 507 134 HOH HOH . Y 14 HOH M 8 508 7 HOH HOH . Y 14 HOH M 9 509 68 HOH HOH . Y 14 HOH M 10 510 18 HOH HOH . Y 14 HOH M 11 511 99 HOH HOH . Y 14 HOH M 12 512 67 HOH HOH . Y 14 HOH M 13 513 47 HOH HOH . Y 14 HOH M 14 514 133 HOH HOH . Y 14 HOH M 15 515 40 HOH HOH . Y 14 HOH M 16 516 137 HOH HOH . Y 14 HOH M 17 517 46 HOH HOH . Y 14 HOH M 18 518 145 HOH HOH . Y 14 HOH M 19 519 70 HOH HOH . Y 14 HOH M 20 520 63 HOH HOH . Y 14 HOH M 21 521 37 HOH HOH . Y 14 HOH M 22 522 80 HOH HOH . Y 14 HOH M 23 523 119 HOH HOH . Y 14 HOH M 24 524 26 HOH HOH . Y 14 HOH M 25 525 92 HOH HOH . Y 14 HOH M 26 526 113 HOH HOH . Y 14 HOH M 27 527 135 HOH HOH . Y 14 HOH M 28 528 87 HOH HOH . Y 14 HOH M 29 529 110 HOH HOH . Y 14 HOH M 30 530 66 HOH HOH . Y 14 HOH M 31 531 118 HOH HOH . Y 14 HOH M 32 532 27 HOH HOH . Y 14 HOH M 33 533 50 HOH HOH . Y 14 HOH M 34 534 102 HOH HOH . Y 14 HOH M 35 535 32 HOH HOH . Y 14 HOH M 36 536 31 HOH HOH . Y 14 HOH M 37 537 21 HOH HOH . Y 14 HOH M 38 538 11 HOH HOH . Y 14 HOH M 39 539 51 HOH HOH . Y 14 HOH M 40 540 142 HOH HOH . Y 14 HOH M 41 541 62 HOH HOH . Y 14 HOH M 42 542 82 HOH HOH . Y 14 HOH M 43 543 101 HOH HOH . Y 14 HOH M 44 544 146 HOH HOH . Y 14 HOH M 45 545 152 HOH HOH . Y 14 HOH M 46 546 72 HOH HOH . Y 14 HOH M 47 547 58 HOH HOH . Y 14 HOH M 48 548 112 HOH HOH . Y 14 HOH M 49 549 88 HOH HOH . Y 14 HOH M 50 550 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . G 6 -12.176 -21.643 -41.644 1 54.65 ? C18 OLC 501 L 1 HETATM 2 C C10 OLC . . . G 6 -4.368 -23.656 -35.938 1 71.4 ? C10 OLC 501 L 1 HETATM 3 C C9 OLC . . . G 6 -3.175 -24.273 -36.001 1 82.92 ? C9 OLC 501 L 1 HETATM 4 C C17 OLC . . . G 6 -10.791 -21.145 -41.26 1 62.13 ? C17 OLC 501 L 1 HETATM 5 C C11 OLC . . . G 6 -4.856 -22.655 -36.97 1 71.45 ? C11 OLC 501 L 1 HETATM 6 C C8 OLC . . . G 6 -2.141 -24.047 -37.098 1 79.67 ? C8 OLC 501 L 1 HETATM 7 C C24 OLC . . . G 6 1.477 -29.564 -44.487 1 40.28 ? C24 OLC 501 L 1 HETATM 8 C C16 OLC . . . G 6 -10.42 -21.447 -39.805 1 62.62 ? C16 OLC 501 L 1 HETATM 9 C C12 OLC . . . G 6 -6.39 -22.569 -36.947 1 76.69 ? C12 OLC 501 L 1 HETATM 10 C C7 OLC . . . G 6 -0.727 -24.497 -36.673 1 88.66 ? C7 OLC 501 L 1 HETATM 11 C C15 OLC . . . G 6 -8.954 -21.114 -39.496 1 72.5 ? C15 OLC 501 L 1 HETATM 12 C C13 OLC . . . G 6 -6.954 -21.591 -37.991 1 81.12 ? C13 OLC 501 L 1 HETATM 13 C C6 OLC . . . G 6 -0.338 -25.923 -37.111 1 83.31 ? C6 OLC 501 L 1 HETATM 14 C C14 OLC . . . G 6 -8.484 -21.633 -38.129 1 73.68 ? C14 OLC 501 L 1 HETATM 15 C C5 OLC . . . G 6 1.127 -26.278 -36.814 1 55.47 ? C5 OLC 501 L 1 HETATM 16 C C4 OLC . . . G 6 1.493 -27.764 -37.017 1 52.61 ? C4 OLC 501 L 1 HETATM 17 C C3 OLC . . . G 6 1.763 -28.182 -38.472 1 51.51 ? C3 OLC 501 L 1 HETATM 18 C C2 OLC . . . G 6 2.282 -29.627 -38.651 1 47.7 ? C2 OLC 501 L 1 HETATM 19 C C21 OLC . . . G 6 2.825 -29.169 -42.454 1 38.52 ? C21 OLC 501 L 1 HETATM 20 C C1 OLC . . . G 6 2.825 -29.879 -40.06 1 46.59 ? C1 OLC 501 L 1 HETATM 21 C C22 OLC . . . G 6 1.896 -28.517 -43.477 1 40.54 ? C22 OLC 501 L 1 HETATM 22 O O19 OLC . . . G 6 3.818 -30.581 -40.319 1 41.74 ? O19 OLC 501 L 1 HETATM 23 O O25 OLC . . . G 6 2.644 -29.909 -45.23 1 56.35 ? O25 OLC 501 L 1 HETATM 24 O O23 OLC . . . G 6 0.736 -27.946 -42.843 1 49.29 ? O23 OLC 501 L 1 HETATM 25 O O20 OLC . . . G 6 2.164 -29.246 -41.185 1 48.32 ? O20 OLC 501 L 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #