data_7P19
#
_model_server_result.job_id            aJfyPd_xQpAi3VpA1WEVbw 
_model_server_result.datetime_utc      '2024-11-21 09:11:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7p19 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":703}' 
#
_entry.id    7P19 
#
_exptl.entry_id    7P19 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7P19 
_cell.length_a            60.591 
_cell.length_b            165.037 
_cell.length_c            228.678 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7P19 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J 1 1 
C,D,K,L,M,N,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 I N N 
? 3 K N N 
? 3 M N N 
? 3 O N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 117 A CYS 133 1_555 A SG CYS 125 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 328 A CYS 344 1_555 A SG CYS 345 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 514 A CYS 530 1_555 A SG CYS 526 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 B SG CYS 48 E CYS 379 1_555 B SG CYS 101 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 B SG CYS 149 E CYS 480 1_555 B SG CYS 157 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 C SG CYS 117 B CYS 133 1_555 C SG CYS 125 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 C SG CYS 328 B CYS 344 1_555 C SG CYS 345 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 C SG CYS 514 B CYS 530 1_555 C SG CYS 526 B CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf9 D SG CYS 48 C CYS 379 1_555 D SG CYS 101 C CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf10 D SG CYS 60 C CYS 391 1_555 D SG CYS 194 C CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf11 D SG CYS 149 C CYS 480 1_555 D SG CYS 157 C CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 74 A ASN 90 1_555 E C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
metalc ? metalc1 A NE2 HIS 358 A HIS 374 1_555 F ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc2 A NE2 HIS 362 A HIS 378 1_555 F ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc3 A OE2 GLU 386 A GLU 402 1_555 F ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc4 C NE2 HIS 358 B HIS 374 1_555 L ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc5 C NE2 HIS 362 B HIS 378 1_555 L ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc6 C OE2 GLU 386 B GLU 402 1_555 L ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 244 n n 
C1 O1 NAG sing 245 n n 
C1 O5 NAG sing 246 n n 
C1 H1 NAG sing 247 n n 
C2 C3 NAG sing 248 n n 
C2 N2 NAG sing 249 n n 
C2 H2 NAG sing 250 n n 
C3 C4 NAG sing 251 n n 
C3 O3 NAG sing 252 n n 
C3 H3 NAG sing 253 n n 
C4 C5 NAG sing 254 n n 
C4 O4 NAG sing 255 n n 
C4 H4 NAG sing 256 n n 
C5 C6 NAG sing 257 n n 
C5 O5 NAG sing 258 n n 
C5 H5 NAG sing 259 n n 
C6 O6 NAG sing 260 n n 
C6 H61 NAG sing 261 n n 
C6 H62 NAG sing 262 n n 
C7 C8 NAG sing 263 n n 
C7 N2 NAG sing 264 n n 
C7 O7 NAG doub 265 n n 
C8 H81 NAG sing 266 n n 
C8 H82 NAG sing 267 n n 
C8 H83 NAG sing 268 n n 
N2 HN2 NAG sing 269 n n 
O1 HO1 NAG sing 270 n n 
O3 HO3 NAG sing 271 n n 
O4 HO4 NAG sing 272 n n 
O6 HO6 NAG sing 273 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7P19 
_atom_sites.fract_transf_matrix[1][1]    0.016504 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006059 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004373 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG A 1 701 701 NAG NAG . 
F 4 ZN A 1 702 702 ZN ZN . 
G 3 NAG A 1 703 703 NAG NAG . 
H 5 EDO A 1 704 704 EDO EDO . 
I 3 NAG E 1 601 601 NAG NAG . 
J 6 CL E 1 602 1 CL CL . 
K 3 NAG B 1 701 701 NAG NAG . 
L 4 ZN B 1 702 702 ZN ZN . 
M 3 NAG B 1 703 703 NAG NAG . 
N 5 EDO B 1 704 704 EDO EDO . 
O 3 NAG B 1 705 705 NAG NAG . 
P 3 NAG C 1 601 601 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . G 3 17.636 24.949 -20.811 1 106.89 ? C1 NAG 703 A 1 
HETATM 2 C C2 NAG . . . G 3 17.819 25.916 -19.645 1 117.55 ? C2 NAG 703 A 1 
HETATM 3 C C3 NAG . . . G 3 19.181 26.595 -19.736 1 122.46 ? C3 NAG 703 A 1 
HETATM 4 C C4 NAG . . . G 3 20.286 25.551 -19.823 1 120.36 ? C4 NAG 703 A 1 
HETATM 5 C C5 NAG . . . G 3 20.01 24.58 -20.969 1 120.99 ? C5 NAG 703 A 1 
HETATM 6 C C6 NAG . . . G 3 20.996 23.437 -21.028 1 112.74 ? C6 NAG 703 A 1 
HETATM 7 C C7 NAG . . . G 3 16.088 27.23 -18.503 1 117.68 ? C7 NAG 703 A 1 
HETATM 8 C C8 NAG . . . G 3 15.02 28.272 -18.655 1 102.34 ? C8 NAG 703 A 1 
HETATM 9 N N2 NAG . . . G 3 16.754 26.907 -19.616 1 114.56 ? N2 NAG 703 A 1 
HETATM 10 O O3 NAG . . . G 3 19.378 27.418 -18.592 1 125.91 ? O3 NAG 703 A 1 
HETATM 11 O O4 NAG . . . G 3 21.541 26.186 -20.038 1 109.53 ? O4 NAG 703 A 1 
HETATM 12 O O5 NAG . . . G 3 18.706 23.997 -20.82 1 120.19 ? O5 NAG 703 A 1 
HETATM 13 O O6 NAG . . . G 3 21.099 22.77 -19.778 1 107.97 ? O6 NAG 703 A 1 
HETATM 14 O O7 NAG . . . G 3 16.335 26.706 -17.422 1 128.05 ? O7 NAG 703 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#