data_7P1K
#
_model_server_result.job_id            wyzFEA754Ar77GrzwW7abQ 
_model_server_result.datetime_utc      '2024-10-15 11:24:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7p1k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":804}' 
#
_entry.id    7P1K 
#
_exptl.entry_id    7P1K 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7P1K 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7P1K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 518 n n 
CBA CAB Y01 sing 519 n n 
CBA CAN Y01 sing 520 n n 
CAN CAJ Y01 sing 521 n n 
CAJ CAO Y01 sing 522 n n 
CAO CBB Y01 sing 523 n n 
CBB CAC Y01 sing 524 n n 
CBB CBE Y01 sing 525 n n 
CBE CAP Y01 sing 526 n n 
CBE CBI Y01 sing 527 n n 
CAP CAQ Y01 sing 528 n n 
CAQ CBG Y01 sing 529 n n 
CBG CBI Y01 sing 530 n n 
CBG CBD Y01 sing 531 n n 
CBI CAE Y01 sing 532 n n 
CBI CAU Y01 sing 533 n n 
CAU CAS Y01 sing 534 n n 
CAS CBF Y01 sing 535 n n 
CBF CBD Y01 sing 536 n n 
CBF CBH Y01 sing 537 n n 
CBD CAK Y01 sing 538 n n 
CAK CAI Y01 sing 539 n n 
CAI CAZ Y01 doub 540 n n 
CAZ CAV Y01 sing 541 n n 
CAZ CBH Y01 sing 542 n n 
CAV CBC Y01 sing 543 n n 
CBH CAD Y01 sing 544 n n 
CBH CAT Y01 sing 545 n n 
CAT CAR Y01 sing 546 n n 
CAR CBC Y01 sing 547 n n 
CBC OAW Y01 sing 548 n n 
OAW CAY Y01 sing 549 n n 
CAY OAG Y01 doub 550 n n 
CAY CAM Y01 sing 551 n n 
CAM CAL Y01 sing 552 n n 
CAL CAX Y01 sing 553 n n 
CAX OAH Y01 sing 554 n n 
CAX OAF Y01 doub 555 n n 
CAA HAA1 Y01 sing 556 n n 
CAA HAA2 Y01 sing 557 n n 
CAA HAA3 Y01 sing 558 n n 
CBA HBA Y01 sing 559 n n 
CAB HAB1 Y01 sing 560 n n 
CAB HAB2 Y01 sing 561 n n 
CAB HAB3 Y01 sing 562 n n 
CAN HAN1 Y01 sing 563 n n 
CAN HAN2 Y01 sing 564 n n 
CAJ HAJ1 Y01 sing 565 n n 
CAJ HAJ2 Y01 sing 566 n n 
CAO HAO1 Y01 sing 567 n n 
CAO HAO2 Y01 sing 568 n n 
CBB HBB Y01 sing 569 n n 
CAC HAC1 Y01 sing 570 n n 
CAC HAC2 Y01 sing 571 n n 
CAC HAC3 Y01 sing 572 n n 
CBE HBE Y01 sing 573 n n 
CAP HAP1 Y01 sing 574 n n 
CAP HAP2 Y01 sing 575 n n 
CAQ HAQ1 Y01 sing 576 n n 
CAQ HAQ2 Y01 sing 577 n n 
CBG HBG Y01 sing 578 n n 
CBD HBD Y01 sing 579 n n 
CAE HAE1 Y01 sing 580 n n 
CAE HAE2 Y01 sing 581 n n 
CAE HAE3 Y01 sing 582 n n 
CAU HAU1 Y01 sing 583 n n 
CAU HAU2 Y01 sing 584 n n 
CAS HAS1 Y01 sing 585 n n 
CAS HAS2 Y01 sing 586 n n 
CBF HBF Y01 sing 587 n n 
CAK HAK1 Y01 sing 588 n n 
CAK HAK2 Y01 sing 589 n n 
CAI HAI Y01 sing 590 n n 
CAV HAV1 Y01 sing 591 n n 
CAV HAV2 Y01 sing 592 n n 
CBC HBC Y01 sing 593 n n 
CAD HAD1 Y01 sing 594 n n 
CAD HAD2 Y01 sing 595 n n 
CAD HAD3 Y01 sing 596 n n 
CAT HAT1 Y01 sing 597 n n 
CAT HAT2 Y01 sing 598 n n 
CAR HAR1 Y01 sing 599 n n 
CAR HAR2 Y01 sing 600 n n 
CAM HAM1 Y01 sing 601 n n 
CAM HAM2 Y01 sing 602 n n 
CAL HAL1 Y01 sing 603 n n 
CAL HAL2 Y01 sing 604 n n 
OAH HAH Y01 sing 605 n n 
#
_atom_sites.entry_id                     7P1K 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 Y01 B 1 1201 1201 Y01 Y01 . 
D 3 T7X B 1 1202 1301 T7X T7X . 
E 3 T7X B 1 1203 1401 T7X 2Y5 . 
F 2 Y01 B 1 1204 801 Y01 Y01 . 
G 2 Y01 B 1 1205 901 Y01 Y01 . 
H 2 Y01 B 1 1206 1001 Y01 Y01 . 
I 2 Y01 A 1 801 801 Y01 Y01 . 
J 2 Y01 A 1 802 901 Y01 Y01 . 
K 2 Y01 A 1 803 1001 Y01 Y01 . 
L 2 Y01 A 1 804 1201 Y01 Y01 . 
M 3 T7X A 1 805 1301 T7X T7X . 
N 3 T7X A 1 806 1401 T7X 2Y5 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . L 2 123.371 114.75 166.482 1 86.13 ? CAA Y01 804 A 1 
HETATM 2 C CBA Y01 . . . L 2 123.142 115.601 167.812 1 86.13 ? CBA Y01 804 A 1 
HETATM 3 C CAB Y01 . . . L 2 124.467 116.154 168.264 1 86.13 ? CAB Y01 804 A 1 
HETATM 4 C CAN Y01 . . . L 2 122.525 114.645 168.949 1 86.13 ? CAN Y01 804 A 1 
HETATM 5 C CAJ Y01 . . . L 2 122.017 115.486 170.18 1 86.13 ? CAJ Y01 804 A 1 
HETATM 6 C CAO Y01 . . . L 2 120.702 116.236 169.824 1 86.13 ? CAO Y01 804 A 1 
HETATM 7 C CBB Y01 . . . L 2 120.409 117.24 170.924 1 86.13 ? CBB Y01 804 A 1 
HETATM 8 C CAC Y01 . . . L 2 120.501 118.625 170.355 1 86.13 ? CAC Y01 804 A 1 
HETATM 9 C CBE Y01 . . . L 2 118.952 116.988 171.545 1 86.13 ? CBE Y01 804 A 1 
HETATM 10 C CAP Y01 . . . L 2 118.873 115.582 172.105 1 86.13 ? CAP Y01 804 A 1 
HETATM 11 C CAQ Y01 . . . L 2 117.989 115.585 173.507 1 86.13 ? CAQ Y01 804 A 1 
HETATM 12 C CBG Y01 . . . L 2 117.441 117.065 173.332 1 86.13 ? CBG Y01 804 A 1 
HETATM 13 C CBI Y01 . . . L 2 118.608 117.851 172.665 1 86.13 ? CBI Y01 804 A 1 
HETATM 14 C CAE Y01 . . . L 2 119.807 118.034 173.603 1 86.13 ? CAE Y01 804 A 1 
HETATM 15 C CAU Y01 . . . L 2 118.002 119.275 172.306 1 86.13 ? CAU Y01 804 A 1 
HETATM 16 C CAS Y01 . . . L 2 117.32 119.88 173.497 1 86.13 ? CAS Y01 804 A 1 
HETATM 17 C CBF Y01 . . . L 2 116.333 119.029 174.207 1 86.13 ? CBF Y01 804 A 1 
HETATM 18 C CBD Y01 . . . L 2 117.004 117.729 174.581 1 86.13 ? CBD Y01 804 A 1 
HETATM 19 C CAK Y01 . . . L 2 116.016 116.776 175.448 1 86.13 ? CAK Y01 804 A 1 
HETATM 20 C CAI Y01 . . . L 2 114.691 117.56 175.848 1 86.13 ? CAI Y01 804 A 1 
HETATM 21 C CAZ Y01 . . . L 2 114.612 118.868 175.916 1 86.13 ? CAZ Y01 804 A 1 
HETATM 22 C CAV Y01 . . . L 2 113.203 119.457 176.383 1 86.13 ? CAV Y01 804 A 1 
HETATM 23 C CBH Y01 . . . L 2 115.744 119.694 175.521 1 86.13 ? CBH Y01 804 A 1 
HETATM 24 C CAD Y01 . . . L 2 116.822 119.694 176.7 1 86.13 ? CAD Y01 804 A 1 
HETATM 25 C CAT Y01 . . . L 2 115.357 121.155 175.237 1 86.13 ? CAT Y01 804 A 1 
HETATM 26 C CAR Y01 . . . L 2 114.17 121.707 175.925 1 86.13 ? CAR Y01 804 A 1 
HETATM 27 C CBC Y01 . . . L 2 112.96 120.813 175.663 1 86.13 ? CBC Y01 804 A 1 
HETATM 28 O OAW Y01 . . . L 2 111.789 121.421 176.109 1 86.13 ? OAW Y01 804 A 1 
HETATM 29 C CAY Y01 . . . L 2 111.609 121.52 177.545 1 86.13 ? CAY Y01 804 A 1 
HETATM 30 O OAG Y01 . . . L 2 112.388 122.132 178.208 1 86.13 ? OAG Y01 804 A 1 
HETATM 31 C CAM Y01 . . . L 2 110.394 120.824 178.225 1 86.13 ? CAM Y01 804 A 1 
HETATM 32 C CAL Y01 . . . L 2 110.807 119.401 178.696 1 86.13 ? CAL Y01 804 A 1 
HETATM 33 C CAX Y01 . . . L 2 109.716 118.815 179.591 1 86.13 ? CAX Y01 804 A 1 
HETATM 34 O OAH Y01 . . . L 2 108.817 118.108 179.097 1 86.13 ? OAH Y01 804 A 1 
HETATM 35 O OAF Y01 . . . L 2 109.728 119.047 180.841 1 86.13 ? OAF Y01 804 A 1 
HETATM 36 H HAA1 Y01 . . . L 2 122.616 114.157 166.344 1 86.13 ? HAA1 Y01 804 A 1 
HETATM 37 H HAA2 Y01 . . . L 2 124.182 114.226 166.568 1 86.13 ? HAA2 Y01 804 A 1 
HETATM 38 H HAA3 Y01 . . . L 2 123.452 115.351 165.725 1 86.13 ? HAA3 Y01 804 A 1 
HETATM 39 H HBA Y01 . . . L 2 122.532 116.331 167.629 1 86.13 ? HBA Y01 804 A 1 
HETATM 40 H HAB1 Y01 . . . L 2 124.351 116.648 169.09 1 86.13 ? HAB1 Y01 804 A 1 
HETATM 41 H HAB2 Y01 . . . L 2 124.819 116.746 167.581 1 86.13 ? HAB2 Y01 804 A 1 
HETATM 42 H HAB3 Y01 . . . L 2 125.089 115.424 168.41 1 86.13 ? HAB3 Y01 804 A 1 
HETATM 43 H HAN1 Y01 . . . L 2 123.209 114.025 169.249 1 86.13 ? HAN1 Y01 804 A 1 
HETATM 44 H HAN2 Y01 . . . L 2 121.782 114.144 168.578 1 86.13 ? HAN2 Y01 804 A 1 
HETATM 45 H HAJ1 Y01 . . . L 2 122.695 116.131 170.432 1 86.13 ? HAJ1 Y01 804 A 1 
HETATM 46 H HAJ2 Y01 . . . L 2 121.851 114.89 170.927 1 86.13 ? HAJ2 Y01 804 A 1 
HETATM 47 H HAO1 Y01 . . . L 2 119.975 115.6 169.749 1 86.13 ? HAO1 Y01 804 A 1 
HETATM 48 H HAO2 Y01 . . . L 2 120.81 116.698 168.979 1 86.13 ? HAO2 Y01 804 A 1 
HETATM 49 H HBB Y01 . . . L 2 121.085 117.131 171.609 1 86.13 ? HBB Y01 804 A 1 
HETATM 50 H HAC1 Y01 . . . L 2 119.694 118.822 169.854 1 86.13 ? HAC1 Y01 804 A 1 
HETATM 51 H HAC2 Y01 . . . L 2 121.27 118.685 169.766 1 86.13 ? HAC2 Y01 804 A 1 
HETATM 52 H HAC3 Y01 . . . L 2 120.602 119.266 171.074 1 86.13 ? HAC3 Y01 804 A 1 
HETATM 53 H HBE Y01 . . . L 2 118.283 117.089 170.849 1 86.13 ? HBE Y01 804 A 1 
HETATM 54 H HAP1 Y01 . . . L 2 118.443 115.001 171.457 1 86.13 ? HAP1 Y01 804 A 1 
HETATM 55 H HAP2 Y01 . . . L 2 119.768 115.258 172.29 1 86.13 ? HAP2 Y01 804 A 1 
HETATM 56 H HAQ1 Y01 . . . L 2 118.553 115.498 174.291 1 86.13 ? HAQ1 Y01 804 A 1 
HETATM 57 H HAQ2 Y01 . . . L 2 117.273 114.93 173.485 1 86.13 ? HAQ2 Y01 804 A 1 
HETATM 58 H HBG Y01 . . . L 2 116.693 117.044 172.716 1 86.13 ? HBG Y01 804 A 1 
HETATM 59 H HBD Y01 . . . L 2 117.772 117.912 175.135 1 86.13 ? HBD Y01 804 A 1 
HETATM 60 H HAE1 Y01 . . . L 2 120.505 118.532 173.152 1 86.13 ? HAE1 Y01 804 A 1 
HETATM 61 H HAE2 Y01 . . . L 2 120.153 117.168 173.87 1 86.13 ? HAE2 Y01 804 A 1 
HETATM 62 H HAE3 Y01 . . . L 2 119.55 118.534 174.39 1 86.13 ? HAE3 Y01 804 A 1 
HETATM 63 H HAU1 Y01 . . . L 2 117.358 119.173 171.588 1 86.13 ? HAU1 Y01 804 A 1 
HETATM 64 H HAU2 Y01 . . . L 2 118.715 119.866 172.02 1 86.13 ? HAU2 Y01 804 A 1 
HETATM 65 H HAS1 Y01 . . . L 2 116.872 120.678 173.18 1 86.13 ? HAS1 Y01 804 A 1 
HETATM 66 H HAS2 Y01 . . . L 2 118.003 120.145 174.132 1 86.13 ? HAS2 Y01 804 A 1 
HETATM 67 H HBF Y01 . . . L 2 115.599 118.84 173.602 1 86.13 ? HBF Y01 804 A 1 
HETATM 68 H HAK1 Y01 . . . L 2 116.48 116.598 176.281 1 86.13 ? HAK1 Y01 804 A 1 
HETATM 69 H HAK2 Y01 . . . L 2 115.73 116.069 174.85 1 86.13 ? HAK2 Y01 804 A 1 
HETATM 70 H HAI Y01 . . . L 2 113.954 117.062 176.119 1 86.13 ? HAI Y01 804 A 1 
HETATM 71 H HAV1 Y01 . . . L 2 112.528 118.847 176.047 1 86.13 ? HAV1 Y01 804 A 1 
HETATM 72 H HAV2 Y01 . . . L 2 113.311 119.652 177.327 1 86.13 ? HAV2 Y01 804 A 1 
HETATM 73 H HBC Y01 . . . L 2 112.892 120.653 174.709 1 86.13 ? HBC Y01 804 A 1 
HETATM 74 H HAD1 Y01 . . . L 2 116.59 120.379 177.347 1 86.13 ? HAD1 Y01 804 A 1 
HETATM 75 H HAD2 Y01 . . . L 2 117.702 119.878 176.338 1 86.13 ? HAD2 Y01 804 A 1 
HETATM 76 H HAD3 Y01 . . . L 2 116.827 118.828 177.136 1 86.13 ? HAD3 Y01 804 A 1 
HETATM 77 H HAT1 Y01 . . . L 2 115.182 121.238 174.288 1 86.13 ? HAT1 Y01 804 A 1 
HETATM 78 H HAT2 Y01 . . . L 2 116.118 121.715 175.458 1 86.13 ? HAT2 Y01 804 A 1 
HETATM 79 H HAR1 Y01 . . . L 2 113.99 122.599 175.589 1 86.13 ? HAR1 Y01 804 A 1 
HETATM 80 H HAR2 Y01 . . . L 2 114.345 121.744 176.878 1 86.13 ? HAR2 Y01 804 A 1 
HETATM 81 H HAM1 Y01 . . . L 2 109.663 120.755 177.592 1 86.13 ? HAM1 Y01 804 A 1 
HETATM 82 H HAM2 Y01 . . . L 2 110.109 121.347 178.991 1 86.13 ? HAM2 Y01 804 A 1 
HETATM 83 H HAL1 Y01 . . . L 2 111.639 119.453 179.192 1 86.13 ? HAL1 Y01 804 A 1 
HETATM 84 H HAL2 Y01 . . . L 2 110.928 118.829 177.921 1 86.13 ? HAL2 Y01 804 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           84 
#