data_7P2H # _model_server_result.job_id gnJ-lOa4ggjRJE2D_W5u_Q _model_server_result.datetime_utc '2024-10-19 09:30:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p2h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":104}' # _entry.id 7P2H # _exptl.entry_id 7P2H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7P2H _cell.length_a 51.023 _cell.length_b 51.023 _cell.length_c 275.902 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P2H _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1,2,3 B,G,H,I,J,L 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 31 A GLY 24 1_555 A N MLY 32 A MLY 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MLY 32 A MLY 25 1_555 A N ILE 33 A ILE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C GLY 40 A GLY 33 1_555 A N MLY 41 A MLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C MLY 41 A MLY 34 1_555 A N GLY 42 A GLY 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C THR 89 A THR 82 1_555 A N MLY 90 A MLY 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MLY 90 A MLY 83 1_555 A N GLY 91 A GLY 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 B C GLY 31 B GLY 24 1_555 B N MLY 32 B MLY 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 B C MLY 32 B MLY 25 1_555 B N ILE 33 B ILE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 B C GLY 40 B GLY 33 1_555 B N MLY 41 B MLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 B C MLY 41 B MLY 34 1_555 B N GLY 42 B GLY 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale11 B C THR 89 B THR 82 1_555 B N MLY 90 B MLY 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 B C MLY 90 B MLY 83 1_555 B N GLY 91 B GLY 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 C O07 QQ7 . A QQ7 101 1_555 F NA NA . A NA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc2 C O10 QQ7 . A QQ7 101 1_555 F NA NA . A NA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc3 C O07 QQ7 . A QQ7 101 1_555 F NA NA . A NA 104 2_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc4 C O10 QQ7 . A QQ7 101 1_555 F NA NA . A NA 104 2_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc5 G O06 QQ7 . B QQ7 101 1_555 J NA NA . B NA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc6 G O QQ7 . B QQ7 101 1_555 J NA NA . B NA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc7 G O06 QQ7 . B QQ7 101 1_555 J NA NA . B NA 104 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc8 G O QQ7 . B QQ7 101 1_555 J NA NA . B NA 104 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7P2H _atom_sites.fract_transf_matrix[1][1] 0.019599 _atom_sites.fract_transf_matrix[1][2] 0.011315 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 QQ7 A 1 101 115 QQ7 QQ7 . D 3 GOL A 1 102 201 GOL GOL . E 3 GOL A 1 103 301 GOL GOL . F 4 NA A 1 104 2 NA NA . G 2 QQ7 B 1 101 115 QQ7 QQ7 . H 3 GOL B 1 102 201 GOL GOL . I 3 GOL B 1 103 301 GOL GOL . J 4 NA B 1 104 3 NA NA . K 5 HOH A 1 201 87 HOH HOH . K 5 HOH A 2 202 27 HOH HOH . K 5 HOH A 3 203 5 HOH HOH . K 5 HOH A 4 204 3 HOH HOH . K 5 HOH A 5 205 45 HOH HOH . K 5 HOH A 6 206 4 HOH HOH . K 5 HOH A 7 207 90 HOH HOH . K 5 HOH A 8 208 18 HOH HOH . K 5 HOH A 9 209 61 HOH HOH . K 5 HOH A 10 210 46 HOH HOH . K 5 HOH A 11 211 17 HOH HOH . K 5 HOH A 12 212 121 HOH HOH . K 5 HOH A 13 213 62 HOH HOH . K 5 HOH A 14 214 32 HOH HOH . K 5 HOH A 15 215 57 HOH HOH . K 5 HOH A 16 216 60 HOH HOH . K 5 HOH A 17 217 22 HOH HOH . K 5 HOH A 18 218 35 HOH HOH . K 5 HOH A 19 219 109 HOH HOH . K 5 HOH A 20 220 9 HOH HOH . K 5 HOH A 21 221 10 HOH HOH . K 5 HOH A 22 222 96 HOH HOH . K 5 HOH A 23 223 89 HOH HOH . K 5 HOH A 24 224 105 HOH HOH . K 5 HOH A 25 225 114 HOH HOH . K 5 HOH A 26 226 37 HOH HOH . K 5 HOH A 27 227 8 HOH HOH . K 5 HOH A 28 228 64 HOH HOH . K 5 HOH A 29 229 44 HOH HOH . K 5 HOH A 30 230 112 HOH HOH . K 5 HOH A 31 231 100 HOH HOH . K 5 HOH A 32 232 12 HOH HOH . K 5 HOH A 33 233 33 HOH HOH . K 5 HOH A 34 234 29 HOH HOH . K 5 HOH A 35 235 83 HOH HOH . K 5 HOH A 36 236 66 HOH HOH . K 5 HOH A 37 237 119 HOH HOH . K 5 HOH A 38 238 48 HOH HOH . K 5 HOH A 39 239 79 HOH HOH . K 5 HOH A 40 240 67 HOH HOH . K 5 HOH A 41 241 34 HOH HOH . K 5 HOH A 42 242 76 HOH HOH . K 5 HOH A 43 243 15 HOH HOH . K 5 HOH A 44 244 71 HOH HOH . K 5 HOH A 45 245 23 HOH HOH . K 5 HOH A 46 246 78 HOH HOH . K 5 HOH A 47 247 101 HOH HOH . K 5 HOH A 48 248 30 HOH HOH . K 5 HOH A 49 249 98 HOH HOH . K 5 HOH A 50 250 118 HOH HOH . L 5 HOH B 1 201 108 HOH HOH . L 5 HOH B 2 202 120 HOH HOH . L 5 HOH B 3 203 2 HOH HOH . L 5 HOH B 4 204 1 HOH HOH . L 5 HOH B 5 205 107 HOH HOH . L 5 HOH B 6 206 26 HOH HOH . L 5 HOH B 7 207 6 HOH HOH . L 5 HOH B 8 208 7 HOH HOH . L 5 HOH B 9 209 54 HOH HOH . L 5 HOH B 10 210 81 HOH HOH . L 5 HOH B 11 211 82 HOH HOH . L 5 HOH B 12 212 39 HOH HOH . L 5 HOH B 13 213 11 HOH HOH . L 5 HOH B 14 214 16 HOH HOH . L 5 HOH B 15 215 53 HOH HOH . L 5 HOH B 16 216 75 HOH HOH . L 5 HOH B 17 217 28 HOH HOH . L 5 HOH B 18 218 110 HOH HOH . L 5 HOH B 19 219 68 HOH HOH . L 5 HOH B 20 220 65 HOH HOH . L 5 HOH B 21 221 59 HOH HOH . L 5 HOH B 22 222 49 HOH HOH . L 5 HOH B 23 223 94 HOH HOH . L 5 HOH B 24 224 52 HOH HOH . L 5 HOH B 25 225 72 HOH HOH . L 5 HOH B 26 226 24 HOH HOH . L 5 HOH B 27 227 19 HOH HOH . L 5 HOH B 28 228 40 HOH HOH . L 5 HOH B 29 229 93 HOH HOH . L 5 HOH B 30 230 95 HOH HOH . L 5 HOH B 31 231 31 HOH HOH . L 5 HOH B 32 232 51 HOH HOH . L 5 HOH B 33 233 56 HOH HOH . L 5 HOH B 34 234 55 HOH HOH . L 5 HOH B 35 235 58 HOH HOH . L 5 HOH B 36 236 74 HOH HOH . L 5 HOH B 37 237 14 HOH HOH . L 5 HOH B 38 238 50 HOH HOH . L 5 HOH B 39 239 103 HOH HOH . L 5 HOH B 40 240 77 HOH HOH . L 5 HOH B 41 241 13 HOH HOH . L 5 HOH B 42 242 86 HOH HOH . L 5 HOH B 43 243 102 HOH HOH . L 5 HOH B 44 244 117 HOH HOH . L 5 HOH B 45 245 88 HOH HOH . L 5 HOH B 46 246 99 HOH HOH . L 5 HOH B 47 247 25 HOH HOH . L 5 HOH B 48 248 85 HOH HOH . L 5 HOH B 49 249 43 HOH HOH . L 5 HOH B 50 250 36 HOH HOH . L 5 HOH B 51 251 38 HOH HOH . L 5 HOH B 52 252 70 HOH HOH . L 5 HOH B 53 253 41 HOH HOH . L 5 HOH B 54 254 84 HOH HOH . L 5 HOH B 55 255 80 HOH HOH . L 5 HOH B 56 256 91 HOH HOH . L 5 HOH B 57 257 20 HOH HOH . L 5 HOH B 58 258 73 HOH HOH . L 5 HOH B 59 259 92 HOH HOH . L 5 HOH B 60 260 63 HOH HOH . L 5 HOH B 61 261 104 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x 25.511 _atom_site.Cartn_y 14.729 _atom_site.Cartn_z -49.973 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 41.22 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 104 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #