data_7P2R # _model_server_result.job_id TZvrN0eTg36ij-B4rooCmQ _model_server_result.datetime_utc '2024-11-29 17:36:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p2r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7P2R # _exptl.entry_id 7P2R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 636.659 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl 6-[4-[[N-[2-[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethyl]carbamimidoyl]amino]butylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.79 _cell.angle_gamma 90 _cell.entry_id 7P2R _cell.length_a 41.797 _cell.length_b 118.687 _cell.length_c 72.052 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P2R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C29 H36 N10 O7' _chem_comp.formula_weight 636.659 _chem_comp.id 4R7 _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl 6-[4-[[N-[2-[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethyl]carbamimidoyl]amino]butylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C20 4R7 sing 1 n n O2 C11 4R7 sing 2 n n O2 C12 4R7 sing 3 n n O6 C21 4R7 sing 4 n n C11 O3 4R7 doub 5 n n C11 C1 4R7 sing 6 n n C6 C1 4R7 sing 7 n y C6 C5 4R7 doub 8 n y O4 C13 4R7 doub 9 n n C10 C5 4R7 sing 10 n y C10 C9 4R7 doub 11 n y C20 C21 4R7 sing 12 n n C20 C19 4R7 sing 13 n n C1 C2 4R7 doub 14 n y C5 C4 4R7 sing 15 n y C9 C8 4R7 sing 16 n y C21 C22 4R7 sing 17 n n C2 C3 4R7 sing 18 n y C4 C3 4R7 doub 19 n y C4 C7 4R7 sing 20 n y C13 N1 4R7 sing 21 n n C13 N2 4R7 sing 22 n n C8 C7 4R7 doub 23 n y C8 N1 4R7 sing 24 n n C3 O1 4R7 sing 25 n n C15 C16 4R7 sing 26 n n C15 C14 4R7 sing 27 n n C19 C18 4R7 sing 28 n n C19 O7 4R7 sing 29 n n C18 C29 4R7 sing 30 n n N2 C14 4R7 sing 31 n n C29 N4 4R7 sing 32 n n N3 C17 4R7 sing 33 n n N3 C28 4R7 sing 34 n n C22 O7 4R7 sing 35 n n C22 N6 4R7 sing 36 n n N4 C17 4R7 sing 37 n n C16 C28 4R7 sing 38 n n C17 N5 4R7 doub 39 n n N6 C23 4R7 sing 40 n y N6 C27 4R7 sing 41 n y C23 N7 4R7 doub 42 n y C27 N10 4R7 doub 43 n y C27 C24 4R7 sing 44 n y N10 C26 4R7 sing 45 n y N7 C24 4R7 sing 46 n y C24 C25 4R7 doub 47 n y C26 N9 4R7 doub 48 n y C25 N9 4R7 sing 49 n y C25 N8 4R7 sing 50 n n C2 H1 4R7 sing 51 n n C6 H2 4R7 sing 52 n n C10 H3 4R7 sing 53 n n C12 H4 4R7 sing 54 n n C12 H5 4R7 sing 55 n n C12 H6 4R7 sing 56 n n C15 H7 4R7 sing 57 n n C15 H8 4R7 sing 58 n n C16 H9 4R7 sing 59 n n C16 H10 4R7 sing 60 n n C18 H11 4R7 sing 61 n n C18 H12 4R7 sing 62 n n C20 H13 4R7 sing 63 n n C22 H14 4R7 sing 64 n n C26 H15 4R7 sing 65 n n C29 H16 4R7 sing 66 n n C29 H17 4R7 sing 67 n n C14 H18 4R7 sing 68 n n C14 H19 4R7 sing 69 n n C19 H20 4R7 sing 70 n n C21 H21 4R7 sing 71 n n C23 H22 4R7 sing 72 n n C28 H23 4R7 sing 73 n n C28 H24 4R7 sing 74 n n C7 H25 4R7 sing 75 n n C9 H26 4R7 sing 76 n n N1 H27 4R7 sing 77 n n N2 H28 4R7 sing 78 n n N3 H29 4R7 sing 79 n n N4 H30 4R7 sing 80 n n N5 H31 4R7 sing 81 n n N8 H32 4R7 sing 82 n n N8 H33 4R7 sing 83 n n O1 H34 4R7 sing 84 n n O5 H35 4R7 sing 85 n n O6 H36 4R7 sing 86 n n # _atom_sites.entry_id 7P2R _atom_sites.fract_transf_matrix[1][1] 0.023925 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005433 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008426 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4R7 A 1 401 401 4R7 980 . D 3 SAH B 1 401 401 SAH SAH . E 2 4R7 B 1 402 401 4R7 980 . F 4 HOH A 1 501 4 HOH HOH . F 4 HOH A 2 502 34 HOH HOH . F 4 HOH A 3 503 7 HOH HOH . F 4 HOH A 4 504 28 HOH HOH . F 4 HOH A 5 505 39 HOH HOH . F 4 HOH A 6 506 38 HOH HOH . F 4 HOH A 7 507 37 HOH HOH . F 4 HOH A 8 508 10 HOH HOH . F 4 HOH A 9 509 33 HOH HOH . F 4 HOH A 10 510 23 HOH HOH . F 4 HOH A 11 511 32 HOH HOH . F 4 HOH A 12 512 27 HOH HOH . F 4 HOH A 13 513 21 HOH HOH . F 4 HOH A 14 514 31 HOH HOH . F 4 HOH A 15 515 22 HOH HOH . F 4 HOH A 16 516 35 HOH HOH . F 4 HOH A 17 517 20 HOH HOH . F 4 HOH A 18 518 14 HOH HOH . F 4 HOH A 19 519 36 HOH HOH . G 4 HOH B 1 501 25 HOH HOH . G 4 HOH B 2 502 3 HOH HOH . G 4 HOH B 3 503 8 HOH HOH . G 4 HOH B 4 504 30 HOH HOH . G 4 HOH B 5 505 5 HOH HOH . G 4 HOH B 6 506 19 HOH HOH . G 4 HOH B 7 507 16 HOH HOH . G 4 HOH B 8 508 6 HOH HOH . G 4 HOH B 9 509 2 HOH HOH . G 4 HOH B 10 510 17 HOH HOH . G 4 HOH B 11 511 13 HOH HOH . G 4 HOH B 12 512 26 HOH HOH . G 4 HOH B 13 513 1 HOH HOH . G 4 HOH B 14 514 15 HOH HOH . G 4 HOH B 15 515 9 HOH HOH . G 4 HOH B 16 516 29 HOH HOH . G 4 HOH B 17 517 24 HOH HOH . G 4 HOH B 18 518 40 HOH HOH . G 4 HOH B 19 519 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4R7 . . . C 2 2.091 30.519 -17.908 1 80.69 ? C1 4R7 401 A 1 HETATM 2 C C2 4R7 . . . C 2 1.41 29.829 -18.909 1 88.74 ? C2 4R7 401 A 1 HETATM 3 C C3 4R7 . . . C 2 1.855 28.603 -19.335 1 94.7 ? C3 4R7 401 A 1 HETATM 4 C C5 4R7 . . . C 2 3.716 28.72 -17.763 1 79.5 ? C5 4R7 401 A 1 HETATM 5 C C6 4R7 . . . C 2 3.226 29.981 -17.35 1 75.48 ? C6 4R7 401 A 1 HETATM 6 N N7 4R7 . . . C 2 6.932 27.595 -21.898 1 39.76 ? N7 4R7 401 A 1 HETATM 7 C C8 4R7 . . . C 2 4.638 26.204 -18.618 1 82.68 ? C8 4R7 401 A 1 HETATM 8 N N9 4R7 . . . C 2 6.887 30.955 -23.473 1 28.91 ? N9 4R7 401 A 1 HETATM 9 C C10 4R7 . . . C 2 4.875 28.135 -17.203 1 76.13 ? C10 4R7 401 A 1 HETATM 10 C C12 4R7 . . . C 2 1.193 33.98 -18.435 1 82.42 ? C12 4R7 401 A 1 HETATM 11 C C13 4R7 . . . C 2 6.421 24.57 -19.224 1 84.97 ? C13 4R7 401 A 1 HETATM 12 C C15 4R7 . . . C 2 8.269 21.583 -19.031 1 75.18 ? C15 4R7 401 A 1 HETATM 13 C C16 4R7 . . . C 2 9.516 20.804 -19.467 1 59.58 ? C16 4R7 401 A 1 HETATM 14 C C17 4R7 . . . C 2 12.459 22.952 -20.03 1 44.24 ? C17 4R7 401 A 1 HETATM 15 C C18 4R7 . . . C 2 12.618 26.646 -19.545 1 38.92 ? C18 4R7 401 A 1 HETATM 16 C C20 4R7 . . . C 2 10.872 27.739 -17.926 1 37.86 ? C20 4R7 401 A 1 HETATM 17 C C22 4R7 . . . C 2 9.665 28.703 -19.752 1 28.95 ? C22 4R7 401 A 1 HETATM 18 C C24 4R7 . . . C 2 7.114 28.901 -22.325 1 32.47 ? C24 4R7 401 A 1 HETATM 19 C C26 4R7 . . . C 2 7.866 31.417 -22.692 1 28.41 ? C26 4R7 401 A 1 HETATM 20 C C27 4R7 . . . C 2 8.127 29.514 -21.606 1 34.12 ? C27 4R7 401 A 1 HETATM 21 C C29 4R7 . . . C 2 12.078 25.27 -19.195 1 43.38 ? C29 4R7 401 A 1 HETATM 22 C C11 4R7 . . . C 2 1.568 31.849 -17.495 1 78.45 ? C11 4R7 401 A 1 HETATM 23 C C14 4R7 . . . C 2 7.947 22.801 -19.877 1 73.24 ? C14 4R7 401 A 1 HETATM 24 C C19 4R7 . . . C 2 11.703 27.812 -19.211 1 37.1 ? C19 4R7 401 A 1 HETATM 25 C C21 4R7 . . . C 2 9.432 28.072 -18.384 1 36.83 ? C21 4R7 401 A 1 HETATM 26 C C23 4R7 . . . C 2 7.827 27.45 -20.954 1 36.3 ? C23 4R7 401 A 1 HETATM 27 C C25 4R7 . . . C 2 6.469 29.678 -23.306 1 28.12 ? C25 4R7 401 A 1 HETATM 28 C C28 4R7 . . . C 2 10.442 21.559 -20.41 1 52.45 ? C28 4R7 401 A 1 HETATM 29 C C4 4R7 . . . C 2 3.017 28.011 -18.778 1 85.53 ? C4 4R7 401 A 1 HETATM 30 C C7 4R7 . . . C 2 3.507 26.746 -19.187 1 86.14 ? C7 4R7 401 A 1 HETATM 31 C C9 4R7 . . . C 2 5.316 26.915 -17.627 1 81.73 ? C9 4R7 401 A 1 HETATM 32 N N1 4R7 . . . C 2 5.111 24.941 -19.053 1 77.11 ? N1 4R7 401 A 1 HETATM 33 N N10 4R7 . . . C 2 8.546 30.775 -21.737 1 26.66 ? N10 4R7 401 A 1 HETATM 34 N N2 4R7 . . . C 2 6.6 23.306 -19.653 1 79.93 ? N2 4R7 401 A 1 HETATM 35 N N3 4R7 . . . C 2 11.163 22.642 -19.753 1 51.23 ? N3 4R7 401 A 1 HETATM 36 N N4 4R7 . . . C 2 12.924 24.202 -19.713 1 42.87 ? N4 4R7 401 A 1 HETATM 37 N N5 4R7 . . . C 2 13.305 22.136 -20.594 1 32.16 ? N5 4R7 401 A 1 HETATM 38 N N6 4R7 . . . C 2 8.57 28.573 -20.706 1 37.63 ? N6 4R7 401 A 1 HETATM 39 N N8 4R7 . . . C 2 5.479 29.232 -24.072 1 32.97 ? N8 4R7 401 A 1 HETATM 40 O O1 4R7 . . . C 2 1.222 27.89 -20.306 1 105.36 ? O1 4R7 401 A 1 HETATM 41 O O2 4R7 . . . C 2 2.058 32.836 -18.247 1 83.65 ? O2 4R7 401 A 1 HETATM 42 O O3 4R7 . . . C 2 0.733 32.017 -16.638 1 74.87 ? O3 4R7 401 A 1 HETATM 43 O O4 4R7 . . . C 2 7.373 25.312 -18.999 1 110.39 ? O4 4R7 401 A 1 HETATM 44 O O5 4R7 . . . C 2 11.366 28.713 -17.02 1 29.22 ? O5 4R7 401 A 1 HETATM 45 O O6 4R7 . . . C 2 8.81 28.984 -17.489 1 32.54 ? O6 4R7 401 A 1 HETATM 46 O O7 4R7 . . . C 2 10.759 27.993 -20.28 1 33.49 ? O7 4R7 401 A 1 # _model_server_stats.io_time_ms 89 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 887 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 46 #