data_7P2R
#
_model_server_result.job_id            mQZ-zMjvAxuMI4ya7qIG2w 
_model_server_result.datetime_utc      '2024-12-01 21:07:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7p2r 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
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_entry.id    7P2R 
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_exptl.entry_id    7P2R 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          102.79 
_cell.angle_gamma         90 
_cell.entry_id            7P2R 
_cell.length_a            41.797 
_cell.length_b            118.687 
_cell.length_c            72.052 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 7P2R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 363 n n 
N HN1 SAH sing 364 n n 
N HN2 SAH sing 365 n n 
CA CB SAH sing 366 n n 
CA C SAH sing 367 n n 
CA HA SAH sing 368 n n 
CB CG SAH sing 369 n n 
CB HB1 SAH sing 370 n n 
CB HB2 SAH sing 371 n n 
CG SD SAH sing 372 n n 
CG HG1 SAH sing 373 n n 
CG HG2 SAH sing 374 n n 
SD C5' SAH sing 375 n n 
C O SAH doub 376 n n 
C OXT SAH sing 377 n n 
OXT HXT SAH sing 378 n n 
C5' C4' SAH sing 379 n n 
C5' "H5'1" SAH sing 380 n n 
C5' "H5'2" SAH sing 381 n n 
C4' O4' SAH sing 382 n n 
C4' C3' SAH sing 383 n n 
C4' H4' SAH sing 384 n n 
O4' C1' SAH sing 385 n n 
C3' O3' SAH sing 386 n n 
C3' C2' SAH sing 387 n n 
C3' H3' SAH sing 388 n n 
O3' HO3' SAH sing 389 n n 
C2' O2' SAH sing 390 n n 
C2' C1' SAH sing 391 n n 
C2' H2' SAH sing 392 n n 
O2' HO2' SAH sing 393 n n 
C1' N9 SAH sing 394 n n 
C1' H1' SAH sing 395 n n 
N9 C8 SAH sing 396 n y 
N9 C4 SAH sing 397 n y 
C8 N7 SAH doub 398 n y 
C8 H8 SAH sing 399 n n 
N7 C5 SAH sing 400 n y 
C5 C6 SAH sing 401 n y 
C5 C4 SAH doub 402 n y 
C6 N6 SAH sing 403 n n 
C6 N1 SAH doub 404 n y 
N6 HN61 SAH sing 405 n n 
N6 HN62 SAH sing 406 n n 
N1 C2 SAH sing 407 n y 
C2 N3 SAH doub 408 n y 
C2 H2 SAH sing 409 n n 
N3 C4 SAH sing 410 n y 
#
_atom_sites.entry_id                     7P2R 
_atom_sites.fract_transf_matrix[1][1]    0.023925 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005433 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008426 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014232 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 4R7 A 1 401 401 4R7 980 . 
D 3 SAH B 1 401 401 SAH SAH . 
E 2 4R7 B 1 402 401 4R7 980 . 
F 4 HOH A 1 501 4 HOH HOH . 
F 4 HOH A 2 502 34 HOH HOH . 
F 4 HOH A 3 503 7 HOH HOH . 
F 4 HOH A 4 504 28 HOH HOH . 
F 4 HOH A 5 505 39 HOH HOH . 
F 4 HOH A 6 506 38 HOH HOH . 
F 4 HOH A 7 507 37 HOH HOH . 
F 4 HOH A 8 508 10 HOH HOH . 
F 4 HOH A 9 509 33 HOH HOH . 
F 4 HOH A 10 510 23 HOH HOH . 
F 4 HOH A 11 511 32 HOH HOH . 
F 4 HOH A 12 512 27 HOH HOH . 
F 4 HOH A 13 513 21 HOH HOH . 
F 4 HOH A 14 514 31 HOH HOH . 
F 4 HOH A 15 515 22 HOH HOH . 
F 4 HOH A 16 516 35 HOH HOH . 
F 4 HOH A 17 517 20 HOH HOH . 
F 4 HOH A 18 518 14 HOH HOH . 
F 4 HOH A 19 519 36 HOH HOH . 
G 4 HOH B 1 501 25 HOH HOH . 
G 4 HOH B 2 502 3 HOH HOH . 
G 4 HOH B 3 503 8 HOH HOH . 
G 4 HOH B 4 504 30 HOH HOH . 
G 4 HOH B 5 505 5 HOH HOH . 
G 4 HOH B 6 506 19 HOH HOH . 
G 4 HOH B 7 507 16 HOH HOH . 
G 4 HOH B 8 508 6 HOH HOH . 
G 4 HOH B 9 509 2 HOH HOH . 
G 4 HOH B 10 510 17 HOH HOH . 
G 4 HOH B 11 511 13 HOH HOH . 
G 4 HOH B 12 512 26 HOH HOH . 
G 4 HOH B 13 513 1 HOH HOH . 
G 4 HOH B 14 514 15 HOH HOH . 
G 4 HOH B 15 515 9 HOH HOH . 
G 4 HOH B 16 516 29 HOH HOH . 
G 4 HOH B 17 517 24 HOH HOH . 
G 4 HOH B 18 518 40 HOH HOH . 
G 4 HOH B 19 519 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . A . D 3 3.895 -3.647 11.243 0.4 25.92 ? N SAH 401 B 1 
HETATM 2 C CA SAH . A . D 3 4.474 -3.482 9.886 0.4 29.26 ? CA SAH 401 B 1 
HETATM 3 C CB SAH . A . D 3 3.928 -2.236 9.176 0.4 35.6 ? CB SAH 401 B 1 
HETATM 4 C CG SAH . A . D 3 3.309 -1.181 10.081 0.4 40.4 ? CG SAH 401 B 1 
HETATM 5 S SD SAH . A . D 3 2.984 0.388 9.227 0.4 46.4 ? SD SAH 401 B 1 
HETATM 6 C C SAH . A . D 3 6.007 -3.424 9.963 0.4 30.77 ? C SAH 401 B 1 
HETATM 7 O O SAH . A . D 3 6.647 -3.899 9.004 0.4 24.89 ? O SAH 401 B 1 
HETATM 8 O OXT SAH . A . D 3 6.509 -2.891 10.966 0.4 30.14 ? OXT SAH 401 B 1 
HETATM 9 C C5' SAH . A . D 3 1.209 0.672 9.396 0.4 53.57 ? C5' SAH 401 B 1 
HETATM 10 C C4' SAH . A . D 3 0.299 -0.445 8.956 0.4 58.58 ? C4' SAH 401 B 1 
HETATM 11 O O4' SAH . A . D 3 -0.887 -0.41 9.776 0.4 60.92 ? O4' SAH 401 B 1 
HETATM 12 C C3' SAH . A . D 3 -0.196 -0.356 7.516 0.4 59.2 ? C3' SAH 401 B 1 
HETATM 13 O O3' SAH . A . D 3 -0.089 -1.608 6.852 0.4 50.67 ? O3' SAH 401 B 1 
HETATM 14 C C2' SAH . A . D 3 -1.622 0.189 7.66 0.4 76.54 ? C2' SAH 401 B 1 
HETATM 15 O O2' SAH . A . D 3 -2.503 -0.18 6.623 0.4 57.45 ? O2' SAH 401 B 1 
HETATM 16 C C1' SAH . A . D 3 -2.035 -0.462 8.968 0.4 75.9 ? C1' SAH 401 B 1 
HETATM 17 N N9 SAH . A . D 3 -3.114 0.214 9.67 0.4 236.35 ? N9 SAH 401 B 1 
HETATM 18 C C8 SAH . A . D 3 -3.317 1.566 9.779 0.4 91.96 ? C8 SAH 401 B 1 
HETATM 19 N N7 SAH . A . D 3 -4.371 1.876 10.489 0.4 79.39 ? N7 SAH 401 B 1 
HETATM 20 C C5 SAH . A . D 3 -4.894 0.653 10.877 0.4 80.39 ? C5 SAH 401 B 1 
HETATM 21 C C6 SAH . A . D 3 -6.016 0.304 11.651 0.4 71.93 ? C6 SAH 401 B 1 
HETATM 22 N N6 SAH . A . D 3 -6.844 1.191 12.196 0.4 62.29 ? N6 SAH 401 B 1 
HETATM 23 N N1 SAH . A . D 3 -6.25 -1.013 11.853 0.4 90.2 ? N1 SAH 401 B 1 
HETATM 24 C C2 SAH . A . D 3 -5.415 -1.905 11.309 0.4 65.32 ? C2 SAH 401 B 1 
HETATM 25 N N3 SAH . A . D 3 -4.341 -1.695 10.558 0.4 69.41 ? N3 SAH 401 B 1 
HETATM 26 C C4 SAH . A . D 3 -4.127 -0.381 10.38 0.4 87.42 ? C4 SAH 401 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           26 
#