data_7P31
#
_model_server_result.job_id            KkvsFREEmuRw7zmd8qCDWg 
_model_server_result.datetime_utc      '2024-11-24 07:23:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7p31 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1002}' 
#
_entry.id    7P31 
#
_exptl.entry_id    7P31 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              426.216 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'AMP PHOSPHORAMIDATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7P31 
_cell.length_a            79.979 
_cell.length_b            102.575 
_cell.length_c            103.829 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7P31 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,S 1 1 
B,L,M,N,O,P,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PRO 364 A PRO 390 1_555 A N CSX 365 A CSX 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale2 A C CSX 365 A CSX 391 1_555 A N LYS 366 A LYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 B C PRO 364 B PRO 390 1_555 B N CSX 365 B CSX 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 B C CSX 365 B CSX 391 1_555 B N LYS 366 B LYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
#
_chem_comp.formula           'C10 H16 N6 O9 P2' 
_chem_comp.formula_weight    426.216 
_chem_comp.id                AN2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'AMP PHOSPHORAMIDATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3B PB AN2 sing 13 n n 
N3B H3B1 AN2 sing 14 n n 
N3B H3B2 AN2 sing 15 n n 
PB O2B AN2 sing 16 n n 
PB O1B AN2 doub 17 n n 
PB O3A AN2 sing 18 n n 
O2B HO2B AN2 sing 19 n n 
O3A PA AN2 sing 20 n n 
PA O1A AN2 doub 21 n n 
PA O2A AN2 sing 22 n n 
PA O5' AN2 sing 23 n n 
O2A HO2A AN2 sing 24 n n 
O5' C5' AN2 sing 25 n n 
C5' C4' AN2 sing 26 n n 
C5' "H5'1" AN2 sing 27 n n 
C5' "H5'2" AN2 sing 28 n n 
C4' O4' AN2 sing 29 n n 
C4' C3' AN2 sing 30 n n 
C4' H4' AN2 sing 31 n n 
O4' C1' AN2 sing 32 n n 
C3' O3' AN2 sing 33 n n 
C3' C2' AN2 sing 34 n n 
C3' H3' AN2 sing 35 n n 
O3' HA AN2 sing 36 n n 
C2' O2' AN2 sing 37 n n 
C2' C1' AN2 sing 38 n n 
C2' H2' AN2 sing 39 n n 
O2' HB AN2 sing 40 n n 
C1' N9 AN2 sing 41 n n 
C1' H1' AN2 sing 42 n n 
N9 C8 AN2 sing 43 n y 
N9 C4 AN2 sing 44 n y 
C8 N7 AN2 doub 45 n y 
C8 H8 AN2 sing 46 n n 
N7 C5 AN2 sing 47 n y 
C5 C4 AN2 doub 48 n y 
C5 C6 AN2 sing 49 n y 
C4 N3 AN2 sing 50 n y 
N3 C2 AN2 doub 51 n y 
C2 N1 AN2 sing 52 n y 
C2 H2 AN2 sing 53 n n 
N1 C6 AN2 doub 54 n y 
C6 N6 AN2 sing 55 n n 
N6 H6N1 AN2 sing 56 n n 
N6 H6N2 AN2 sing 57 n n 
#
_atom_sites.entry_id                     7P31 
_atom_sites.fract_transf_matrix[1][1]    0.012503 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009749 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009631 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PG4 A 1 1001 1001 PG4 PG4 . 
D 3 AN2 A 1 1002 1301 AN2 AN2 . 
E 4 GOL A 1 1003 1501 GOL GOL . 
F 5 PYZ A 1 504 1701 PYZ LIG . 
G 4 GOL A 1 1005 1801 GOL GOL . 
H 4 GOL A 1 1006 1901 GOL GOL . 
I 6 PO4 A 1 1007 1 PO4 PO4 . 
J 7 CL A 1 1008 1 CL CL . 
K 7 CL A 1 1009 2 CL CL . 
L 4 GOL B 1 501 503 GOL GOL . 
M 3 AN2 B 1 502 1101 AN2 AN2 . 
N 4 GOL B 1 503 1401 GOL GOL . 
O 5 PYZ B 1 504 1701 PYZ LIG . 
P 4 GOL B 1 505 2001 GOL GOL . 
Q 6 PO4 B 1 506 2 PO4 PO4 . 
R 8 IOD B 1 507 1 IOD IOD . 
S 9 HOH A 1 1101 76 HOH HOH . 
S 9 HOH A 2 1102 363 HOH HOH . 
S 9 HOH A 3 1103 687 HOH HOH . 
S 9 HOH A 4 1104 634 HOH HOH . 
S 9 HOH A 5 1105 608 HOH HOH . 
S 9 HOH A 6 1106 624 HOH HOH . 
S 9 HOH A 7 1107 362 HOH HOH . 
S 9 HOH A 8 1108 351 HOH HOH . 
S 9 HOH A 9 1109 679 HOH HOH . 
S 9 HOH A 10 1110 350 HOH HOH . 
S 9 HOH A 11 1111 611 HOH HOH . 
S 9 HOH A 12 1112 394 HOH HOH . 
S 9 HOH A 13 1113 114 HOH HOH . 
S 9 HOH A 14 1114 642 HOH HOH . 
S 9 HOH A 15 1115 361 HOH HOH . 
S 9 HOH A 16 1116 699 HOH HOH . 
S 9 HOH A 17 1117 728 HOH HOH . 
S 9 HOH A 18 1118 707 HOH HOH . 
S 9 HOH A 19 1119 695 HOH HOH . 
S 9 HOH A 20 1120 680 HOH HOH . 
S 9 HOH A 21 1121 653 HOH HOH . 
S 9 HOH A 22 1122 133 HOH HOH . 
S 9 HOH A 23 1123 21 HOH HOH . 
S 9 HOH A 24 1124 701 HOH HOH . 
S 9 HOH A 25 1125 658 HOH HOH . 
S 9 HOH A 26 1126 712 HOH HOH . 
S 9 HOH A 27 1127 708 HOH HOH . 
S 9 HOH A 28 1128 13 HOH HOH . 
S 9 HOH A 29 1129 715 HOH HOH . 
S 9 HOH A 30 1130 636 HOH HOH . 
S 9 HOH A 31 1131 675 HOH HOH . 
S 9 HOH A 32 1132 692 HOH HOH . 
S 9 HOH A 33 1133 286 HOH HOH . 
S 9 HOH A 34 1134 306 HOH HOH . 
S 9 HOH A 35 1135 776 HOH HOH . 
S 9 HOH A 36 1136 689 HOH HOH . 
S 9 HOH A 37 1137 656 HOH HOH . 
S 9 HOH A 38 1138 720 HOH HOH . 
S 9 HOH A 39 1139 172 HOH HOH . 
S 9 HOH A 40 1140 388 HOH HOH . 
S 9 HOH A 41 1141 255 HOH HOH . 
S 9 HOH A 42 1142 625 HOH HOH . 
S 9 HOH A 43 1143 292 HOH HOH . 
S 9 HOH A 44 1144 668 HOH HOH . 
S 9 HOH A 45 1145 659 HOH HOH . 
S 9 HOH A 46 1146 734 HOH HOH . 
S 9 HOH A 47 1147 93 HOH HOH . 
S 9 HOH A 48 1148 686 HOH HOH . 
S 9 HOH A 49 1149 314 HOH HOH . 
S 9 HOH A 50 1150 768 HOH HOH . 
S 9 HOH A 51 1151 344 HOH HOH . 
S 9 HOH A 52 1152 301 HOH HOH . 
S 9 HOH A 53 1153 243 HOH HOH . 
S 9 HOH A 54 1154 726 HOH HOH . 
S 9 HOH A 55 1155 334 HOH HOH . 
S 9 HOH A 56 1156 398 HOH HOH . 
S 9 HOH A 57 1157 390 HOH HOH . 
S 9 HOH A 58 1158 222 HOH HOH . 
S 9 HOH A 59 1159 752 HOH HOH . 
S 9 HOH A 60 1160 759 HOH HOH . 
S 9 HOH A 61 1161 741 HOH HOH . 
S 9 HOH A 62 1162 387 HOH HOH . 
S 9 HOH A 63 1163 770 HOH HOH . 
S 9 HOH A 64 1164 389 HOH HOH . 
S 9 HOH A 65 1165 760 HOH HOH . 
S 9 HOH A 66 1166 391 HOH HOH . 
S 9 HOH A 67 1167 393 HOH HOH . 
S 9 HOH A 68 1168 782 HOH HOH . 
S 9 HOH A 69 1169 166 HOH HOH . 
S 9 HOH A 70 1170 395 HOH HOH . 
S 9 HOH A 71 1171 729 HOH HOH . 
S 9 HOH A 72 1172 123 HOH HOH . 
S 9 HOH A 73 1173 356 HOH HOH . 
S 9 HOH A 74 1174 392 HOH HOH . 
S 9 HOH A 75 1175 721 HOH HOH . 
S 9 HOH A 76 1176 303 HOH HOH . 
S 9 HOH A 77 1177 789 HOH HOH . 
S 9 HOH A 78 1178 51 HOH HOH . 
S 9 HOH A 79 1179 302 HOH HOH . 
S 9 HOH A 80 1180 246 HOH HOH . 
S 9 HOH A 81 1181 397 HOH HOH . 
S 9 HOH A 82 1182 803 HOH HOH . 
S 9 HOH A 83 1183 359 HOH HOH . 
S 9 HOH A 84 1184 257 HOH HOH . 
S 9 HOH A 85 1185 799 HOH HOH . 
S 9 HOH A 86 1186 213 HOH HOH . 
T 9 HOH B 1 601 299 HOH HOH . 
T 9 HOH B 2 602 353 HOH HOH . 
T 9 HOH B 3 603 604 HOH HOH . 
T 9 HOH B 4 604 630 HOH HOH . 
T 9 HOH B 5 605 396 HOH HOH . 
T 9 HOH B 6 606 643 HOH HOH . 
T 9 HOH B 7 607 180 HOH HOH . 
T 9 HOH B 8 608 159 HOH HOH . 
T 9 HOH B 9 609 271 HOH HOH . 
T 9 HOH B 10 610 370 HOH HOH . 
T 9 HOH B 11 611 372 HOH HOH . 
T 9 HOH B 12 612 656 HOH HOH . 
T 9 HOH B 13 613 639 HOH HOH . 
T 9 HOH B 14 614 702 HOH HOH . 
T 9 HOH B 15 615 155 HOH HOH . 
T 9 HOH B 16 616 312 HOH HOH . 
T 9 HOH B 17 617 181 HOH HOH . 
T 9 HOH B 18 618 645 HOH HOH . 
T 9 HOH B 19 619 682 HOH HOH . 
T 9 HOH B 20 620 623 HOH HOH . 
T 9 HOH B 21 621 657 HOH HOH . 
T 9 HOH B 22 622 384 HOH HOH . 
T 9 HOH B 23 623 681 HOH HOH . 
T 9 HOH B 24 624 683 HOH HOH . 
T 9 HOH B 25 625 678 HOH HOH . 
T 9 HOH B 26 626 304 HOH HOH . 
T 9 HOH B 27 627 300 HOH HOH . 
T 9 HOH B 28 628 703 HOH HOH . 
T 9 HOH B 29 629 49 HOH HOH . 
T 9 HOH B 30 630 666 HOH HOH . 
T 9 HOH B 31 631 677 HOH HOH . 
T 9 HOH B 32 632 305 HOH HOH . 
T 9 HOH B 33 633 174 HOH HOH . 
T 9 HOH B 34 634 343 HOH HOH . 
T 9 HOH B 35 635 74 HOH HOH . 
T 9 HOH B 36 636 660 HOH HOH . 
T 9 HOH B 37 637 46 HOH HOH . 
T 9 HOH B 38 638 399 HOH HOH . 
T 9 HOH B 39 639 348 HOH HOH . 
T 9 HOH B 40 640 386 HOH HOH . 
T 9 HOH B 41 641 1 HOH HOH . 
T 9 HOH B 42 642 609 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3B AN2 . . . D 3 29.716 75.233 54.515 1 53.68 ? N3B AN2 1002 A 1 
HETATM 2 P PB AN2 . . . D 3 29.291 76.875 54.544 1 54.75 ? PB AN2 1002 A 1 
HETATM 3 O O2B AN2 . . . D 3 30.498 77.631 54.83 1 56.63 ? O2B AN2 1002 A 1 
HETATM 4 O O1B AN2 . . . D 3 28.622 77.273 53.178 1 55.54 ? O1B AN2 1002 A 1 
HETATM 5 O O3A AN2 . . . D 3 28.363 77.23 55.79 1 56.44 ? O3A AN2 1002 A 1 
HETATM 6 P PA AN2 . . . D 3 27.249 78.363 56.027 1 55.72 ? PA AN2 1002 A 1 
HETATM 7 O O1A AN2 . . . D 3 26.772 79.138 54.829 1 55.92 ? O1A AN2 1002 A 1 
HETATM 8 O O2A AN2 . . . D 3 26.268 77.471 56.765 1 57.8 ? O2A AN2 1002 A 1 
HETATM 9 O O5' AN2 . . . D 3 28.069 79.384 56.944 1 54.51 ? O5' AN2 1002 A 1 
HETATM 10 C C5' AN2 . . . D 3 28.691 79.036 58.173 1 54.16 ? C5' AN2 1002 A 1 
HETATM 11 C C4' AN2 . . . D 3 29.255 80.333 58.765 1 53.22 ? C4' AN2 1002 A 1 
HETATM 12 O O4' AN2 . . . D 3 28.131 81.2 58.981 1 53.74 ? O4' AN2 1002 A 1 
HETATM 13 C C3' AN2 . . . D 3 29.848 80.14 60.158 1 52.03 ? C3' AN2 1002 A 1 
HETATM 14 O O3' AN2 . . . D 3 31.108 80.824 60.213 1 51.59 ? O3' AN2 1002 A 1 
HETATM 15 C C2' AN2 . . . D 3 28.901 80.839 61.125 1 52.04 ? C2' AN2 1002 A 1 
HETATM 16 O O2' AN2 . . . D 3 29.531 81.499 62.243 1 51.89 ? O2' AN2 1002 A 1 
HETATM 17 C C1' AN2 . . . D 3 28.308 81.882 60.214 1 52.39 ? C1' AN2 1002 A 1 
HETATM 18 N N9 AN2 . . . D 3 27.03 82.353 60.747 1 51.44 ? N9 AN2 1002 A 1 
HETATM 19 C C8 AN2 . . . D 3 25.861 81.672 60.831 1 51.2 ? C8 AN2 1002 A 1 
HETATM 20 N N7 AN2 . . . D 3 24.895 82.461 61.346 1 50.55 ? N7 AN2 1002 A 1 
HETATM 21 C C5 AN2 . . . D 3 25.469 83.633 61.638 1 50.16 ? C5 AN2 1002 A 1 
HETATM 22 C C4 AN2 . . . D 3 26.878 83.561 61.248 1 50.58 ? C4 AN2 1002 A 1 
HETATM 23 N N3 AN2 . . . D 3 27.675 84.649 61.347 1 50.27 ? N3 AN2 1002 A 1 
HETATM 24 C C2 AN2 . . . D 3 27.169 85.791 61.826 1 50.14 ? C2 AN2 1002 A 1 
HETATM 25 N N1 AN2 . . . D 3 25.894 85.917 62.259 1 49.57 ? N1 AN2 1002 A 1 
HETATM 26 C C6 AN2 . . . D 3 25.022 84.893 62.233 1 49.59 ? C6 AN2 1002 A 1 
HETATM 27 N N6 AN2 . . . D 3 23.765 84.979 62.711 1 49.13 ? N6 AN2 1002 A 1 
#
_model_server_stats.io_time_ms              92 
_model_server_stats.parse_time_ms           136 
_model_server_stats.create_model_time_ms    52 
_model_server_stats.query_time_ms           237 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#