data_7P33 # _model_server_result.job_id Ob4QCZKjiYwtO36Dwfd6ag _model_server_result.datetime_utc '2024-11-22 18:11:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p33 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":201}' # _entry.id 7P33 # _exptl.entry_id 7P33 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7P33 _cell.length_a 94.208 _cell.length_b 94.208 _cell.length_c 455.582 _cell.Z_PDB 60 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P33 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F,M,R 1 1 B,H,N,T 2 1 C,G,K,O,S 3 1 D,I,L,P,U 4 1 E,J,Q,V 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7P33 _atom_sites.fract_transf_matrix[1][1] 0.010615 _atom_sites.fract_transf_matrix[1][2] 0.006128 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002195 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 3 EDO C 1 201 201 EDO EDO . L 4 PO4 I 1 201 1 PO4 PO4 . M 5 HOH A 1 201 1 HOH HOH . M 5 HOH A 2 202 9 HOH HOH . M 5 HOH A 3 203 15 HOH HOH . M 5 HOH A 4 204 14 HOH HOH . M 5 HOH A 5 205 32 HOH HOH . M 5 HOH A 6 206 30 HOH HOH . M 5 HOH A 7 207 35 HOH HOH . M 5 HOH A 8 208 63 HOH HOH . M 5 HOH A 9 209 31 HOH HOH . M 5 HOH A 10 210 64 HOH HOH . M 5 HOH A 11 211 26 HOH HOH . N 5 HOH B 1 201 19 HOH HOH . N 5 HOH B 2 202 62 HOH HOH . N 5 HOH B 3 203 33 HOH HOH . N 5 HOH B 4 204 27 HOH HOH . O 5 HOH C 1 301 20 HOH HOH . O 5 HOH C 2 302 10 HOH HOH . O 5 HOH C 3 303 21 HOH HOH . O 5 HOH C 4 304 3 HOH HOH . O 5 HOH C 5 305 8 HOH HOH . O 5 HOH C 6 306 17 HOH HOH . O 5 HOH C 7 307 4 HOH HOH . O 5 HOH C 8 308 40 HOH HOH . O 5 HOH C 9 309 39 HOH HOH . O 5 HOH C 10 310 65 HOH HOH . O 5 HOH C 11 311 29 HOH HOH . O 5 HOH C 12 312 66 HOH HOH . O 5 HOH C 13 313 68 HOH HOH . O 5 HOH C 14 314 36 HOH HOH . O 5 HOH C 15 315 41 HOH HOH . O 5 HOH C 16 316 67 HOH HOH . P 5 HOH D 1 201 38 HOH HOH . P 5 HOH D 2 202 34 HOH HOH . P 5 HOH D 3 203 69 HOH HOH . P 5 HOH D 4 204 57 HOH HOH . Q 5 HOH E 1 201 46 HOH HOH . Q 5 HOH E 2 202 6 HOH HOH . Q 5 HOH E 3 203 18 HOH HOH . Q 5 HOH E 4 204 51 HOH HOH . Q 5 HOH E 5 205 44 HOH HOH . Q 5 HOH E 6 206 43 HOH HOH . Q 5 HOH E 7 207 50 HOH HOH . Q 5 HOH E 8 208 45 HOH HOH . Q 5 HOH E 9 209 47 HOH HOH . Q 5 HOH E 10 210 49 HOH HOH . R 5 HOH G 1 201 7 HOH HOH . R 5 HOH G 2 202 23 HOH HOH . R 5 HOH G 3 203 52 HOH HOH . R 5 HOH G 4 204 25 HOH HOH . R 5 HOH G 5 205 37 HOH HOH . R 5 HOH G 6 206 22 HOH HOH . S 5 HOH H 1 201 60 HOH HOH . S 5 HOH H 2 202 59 HOH HOH . S 5 HOH H 3 203 24 HOH HOH . S 5 HOH H 4 204 53 HOH HOH . T 5 HOH F 1 201 5 HOH HOH . T 5 HOH F 2 202 61 HOH HOH . T 5 HOH F 3 203 54 HOH HOH . T 5 HOH F 4 204 55 HOH HOH . U 5 HOH I 1 301 56 HOH HOH . U 5 HOH I 2 302 58 HOH HOH . V 5 HOH J 1 201 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . K 3 -63.3 -13.418 28.239 1 74.82 ? C1 EDO 201 C 1 HETATM 2 O O1 EDO . . . K 3 -62.678 -12.755 27.139 1 80.59 ? O1 EDO 201 C 1 HETATM 3 C C2 EDO . . . K 3 -62.433 -14.591 28.663 1 75.71 ? C2 EDO 201 C 1 HETATM 4 O O2 EDO . . . K 3 -62.984 -15.173 29.845 1 77.81 ? O2 EDO 201 C 1 HETATM 5 H H11 EDO . . . K 3 -64.29 -13.775 27.946 1 89.78 ? H11 EDO 201 C 1 HETATM 6 H H12 EDO . . . K 3 -63.419 -12.723 29.073 1 89.78 ? H12 EDO 201 C 1 HETATM 7 H HO1 EDO . . . K 3 -63.225 -12.006 26.863 1 96.7 ? HO1 EDO 201 C 1 HETATM 8 H H21 EDO . . . K 3 -61.415 -14.249 28.858 1 90.86 ? H21 EDO 201 C 1 HETATM 9 H H22 EDO . . . K 3 -62.398 -15.335 27.865 1 90.86 ? H22 EDO 201 C 1 HETATM 10 H HO2 EDO . . . K 3 -62.437 -15.921 30.121 1 93.37 ? HO2 EDO 201 C 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #