data_7P35 # _model_server_result.job_id Eg3NFyuZBN2bmosD5q20Xw _model_server_result.datetime_utc '2025-07-19 14:44:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7P35 # _exptl.entry_id 7P35 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 600.678 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description '4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.774 _cell.angle_gamma 90 _cell.entry_id 7P35 _cell.length_a 45.023 _cell.length_b 54.024 _cell.length_c 114.067 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 AAA CYS 145 1_555 C C19 AG7 . AAA AG7 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? covale ? covale2 B SG CYS 145 BBB CYS 145 1_555 D C19 AG7 . BBB AG7 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? # _chem_comp.formula 'C31 H41 F N4 O7' _chem_comp.formula_weight 600.678 _chem_comp.id AG7 _chem_comp.mon_nstd_flag . _chem_comp.name '4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RUPINTRIVIR, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 AG7 sing 1 n n C01 O03 AG7 doub 2 n n C01 C57 AG7 sing 3 n n C02 C04 AG7 sing 4 n n C02 H2 AG7 sing 5 n n C02 H3 AG7 sing 6 n n C04 C05 AG7 sing 7 n n C04 C47 AG7 sing 8 n n C04 H27 AG7 sing 9 n n C05 C06 AG7 sing 10 n n C05 H28 AG7 sing 11 n n C05 H29 AG7 sing 12 n n C06 C07 AG7 doub 13 n y C06 C11 AG7 sing 14 n y C07 C08 AG7 sing 15 n y C07 H30 AG7 sing 16 n n C08 C09 AG7 doub 17 n y C08 H31 AG7 sing 18 n n C09 C10 AG7 sing 19 n y C09 F1 AG7 sing 20 n n C10 C11 AG7 doub 21 n y C10 H33 AG7 sing 22 n n C11 H34 AG7 sing 23 n n N12 C13 AG7 sing 24 n n N12 C47 AG7 sing 25 n n N12 H49 AG7 sing 26 n n C13 C14 AG7 sing 27 n n C13 C19 AG7 sing 28 n n C13 H91 AG7 sing 29 n n C14 C15 AG7 sing 30 n n C14 H35 AG7 sing 31 n n C14 H36 AG7 sing 32 n n C15 C16 AG7 sing 33 n n C15 C84 AG7 sing 34 n n C15 H94 AG7 sing 35 n n C16 N17 AG7 sing 36 n n C16 O18 AG7 doub 37 n n N17 C83 AG7 sing 38 n n N17 H39 AG7 sing 39 n n C19 C20 AG7 sing 40 n n C19 H191 AG7 sing 41 n n C19 H192 AG7 sing 42 n n C20 C21 AG7 sing 43 n n C20 H41 AG7 sing 44 n n C20 H42 AG7 sing 45 n n C21 O22 AG7 sing 46 n n C21 O23 AG7 doub 47 n n O22 C50 AG7 sing 48 n n C47 O48 AG7 doub 49 n n C50 C53 AG7 sing 50 n n C50 H51 AG7 sing 51 n n C50 H52 AG7 sing 52 n n C53 H53 AG7 sing 53 n n C53 H54 AG7 sing 54 n n C53 H56 AG7 sing 55 n n C57 N58 AG7 sing 56 n n C57 C78 AG7 sing 57 n n C57 H77 AG7 sing 58 n n N58 C59 AG7 sing 59 n n N58 H61 AG7 sing 60 n n C59 O60 AG7 doub 61 n n C59 C1 AG7 sing 62 n n C78 C81 AG7 sing 63 n n C78 C82 AG7 sing 64 n n C78 H79 AG7 sing 65 n n C81 H82 AG7 sing 66 n n C81 H84 AG7 sing 67 n n C81 H85 AG7 sing 68 n n C82 H86 AG7 sing 69 n n C82 H87 AG7 sing 70 n n C82 H88 AG7 sing 71 n n C83 C84 AG7 sing 72 n n C83 H89 AG7 sing 73 n n C83 H90 AG7 sing 74 n n C84 H92 AG7 sing 75 n n C84 H93 AG7 sing 76 n n C1 C2 AG7 sing 77 n y C1 N5 AG7 doub 78 n y C2 C3 AG7 doub 79 n y C2 H8 AG7 sing 80 n n C3 O4 AG7 sing 81 n y C3 C4 AG7 sing 82 n n O4 N5 AG7 sing 83 n y C4 H5 AG7 sing 84 n n C4 H6 AG7 sing 85 n n C4 H7 AG7 sing 86 n n # _atom_sites.entry_id 7P35 _atom_sites.fract_transf_matrix[1][1] 0.022211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004227 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01851 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008924 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AG7 AAA 1 401 398 AG7 AG7 . D 2 AG7 BBB 1 401 398 AG7 AG7 . E 3 HOH AAA 1 501 15 HOH HOH . E 3 HOH AAA 2 502 3 HOH HOH . E 3 HOH AAA 3 503 2 HOH HOH . E 3 HOH AAA 4 504 20 HOH HOH . E 3 HOH AAA 5 505 16 HOH HOH . E 3 HOH AAA 6 506 11 HOH HOH . E 3 HOH AAA 7 507 1 HOH HOH . E 3 HOH AAA 8 508 17 HOH HOH . E 3 HOH AAA 9 509 19 HOH HOH . E 3 HOH AAA 10 510 9 HOH HOH . E 3 HOH AAA 11 511 7 HOH HOH . E 3 HOH AAA 12 512 26 HOH HOH . E 3 HOH AAA 13 513 24 HOH HOH . E 3 HOH AAA 14 514 8 HOH HOH . E 3 HOH AAA 15 515 34 HOH HOH . E 3 HOH AAA 16 516 25 HOH HOH . E 3 HOH AAA 17 517 6 HOH HOH . E 3 HOH AAA 18 518 4 HOH HOH . E 3 HOH AAA 19 519 5 HOH HOH . F 3 HOH BBB 1 501 31 HOH HOH . F 3 HOH BBB 2 502 21 HOH HOH . F 3 HOH BBB 3 503 13 HOH HOH . F 3 HOH BBB 4 504 22 HOH HOH . F 3 HOH BBB 5 505 12 HOH HOH . F 3 HOH BBB 6 506 33 HOH HOH . F 3 HOH BBB 7 507 23 HOH HOH . F 3 HOH BBB 8 508 14 HOH HOH . F 3 HOH BBB 9 509 10 HOH HOH . F 3 HOH BBB 10 510 28 HOH HOH . F 3 HOH BBB 11 511 32 HOH HOH . F 3 HOH BBB 12 512 18 HOH HOH . F 3 HOH BBB 13 513 30 HOH HOH . F 3 HOH BBB 14 514 29 HOH HOH . F 3 HOH BBB 15 515 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 AG7 . . . C 2 2.424 -2.482 -13.557 1 94.18 0 C01 AG7 401 AAA 1 HETATM 2 C C02 AG7 . . . C 2 3.065 -1.515 -14.503 1 96.54 0 C02 AG7 401 AAA 1 HETATM 3 O O03 AG7 . . . C 2 1.28 -2.355 -13.241 1 75.38 0 O03 AG7 401 AAA 1 HETATM 4 C C04 AG7 . . . C 2 3.015 -0.086 -13.985 1 92.02 0 C04 AG7 401 AAA 1 HETATM 5 C C05 AG7 . . . C 2 4.313 0.323 -13.29 1 95.15 0 C05 AG7 401 AAA 1 HETATM 6 C C06 AG7 . . . C 2 4.067 0.598 -11.84 1 102.14 0 C06 AG7 401 AAA 1 HETATM 7 C C07 AG7 . . . C 2 4.356 -0.355 -10.88 1 112.17 0 C07 AG7 401 AAA 1 HETATM 8 C C08 AG7 . . . C 2 4.104 -0.114 -9.54 1 120.59 0 C08 AG7 401 AAA 1 HETATM 9 C C09 AG7 . . . C 2 3.534 1.078 -9.199 1 119.2 0 C09 AG7 401 AAA 1 HETATM 10 C C10 AG7 . . . C 2 3.214 2.037 -10.11 1 116.46 0 C10 AG7 401 AAA 1 HETATM 11 C C11 AG7 . . . C 2 3.476 1.784 -11.445 1 106.95 0 C11 AG7 401 AAA 1 HETATM 12 N N12 AG7 . . . C 2 1.46 0.881 -15.545 1 77.57 0 N12 AG7 401 AAA 1 HETATM 13 C C13 AG7 . . . C 2 1.076 1.386 -16.86 1 73.5 0 C13 AG7 401 AAA 1 HETATM 14 C C14 AG7 . . . C 2 0.048 0.443 -17.488 1 70.63 0 C14 AG7 401 AAA 1 HETATM 15 C C15 AG7 . . . C 2 0.501 -1.025 -17.458 1 67.12 0 C15 AG7 401 AAA 1 HETATM 16 C C16 AG7 . . . C 2 -0.523 -1.963 -18.073 1 70.42 0 C16 AG7 401 AAA 1 HETATM 17 N N17 AG7 . . . C 2 0.049 -2.664 -19.051 1 69.27 0 N17 AG7 401 AAA 1 HETATM 18 O O18 AG7 . . . C 2 -1.71 -2.06 -17.71 1 70.97 0 O18 AG7 401 AAA 1 HETATM 19 C C19 AG7 . . . C 2 0.667 2.856 -16.732 1 70.03 0 C19 AG7 401 AAA 1 HETATM 20 C C20 AG7 . . . C 2 1.839 3.775 -16.351 1 73.22 0 C20 AG7 401 AAA 1 HETATM 21 C C21 AG7 . . . C 2 2.869 3.989 -17.441 1 82.61 0 C21 AG7 401 AAA 1 HETATM 22 O O22 AG7 . . . C 2 3.834 4.819 -17.036 1 85.27 0 O22 AG7 401 AAA 1 HETATM 23 O O23 AG7 . . . C 2 2.85 3.483 -18.539 1 82.49 0 O23 AG7 401 AAA 1 HETATM 24 C C47 AG7 . . . C 2 2.736 0.798 -15.172 1 88.32 0 C47 AG7 401 AAA 1 HETATM 25 O O48 AG7 . . . C 2 3.653 1.35 -15.777 1 104.03 0 O48 AG7 401 AAA 1 HETATM 26 C C50 AG7 . . . C 2 4.168 5.933 -17.911 1 85.84 0 C50 AG7 401 AAA 1 HETATM 27 C C53 AG7 . . . C 2 5.359 5.598 -18.735 1 81.55 0 C53 AG7 401 AAA 1 HETATM 28 C C57 AG7 . . . C 2 3.276 -3.644 -13.049 1 109.18 0 C57 AG7 401 AAA 1 HETATM 29 N N58 AG7 . . . C 2 2.922 -4.082 -11.703 1 116.74 0 N58 AG7 401 AAA 1 HETATM 30 C C59 AG7 . . . C 2 3.869 -4.532 -10.874 1 126.39 0 C59 AG7 401 AAA 1 HETATM 31 O O60 AG7 . . . C 2 4.972 -3.992 -10.82 1 127.01 0 O60 AG7 401 AAA 1 HETATM 32 C C78 AG7 . . . C 2 3.216 -4.807 -14.063 1 112.2 0 C78 AG7 401 AAA 1 HETATM 33 C C81 AG7 . . . C 2 3.65 -4.377 -15.46 1 113.93 0 C81 AG7 401 AAA 1 HETATM 34 F F1 AG7 . . . C 2 3.29 1.336 -7.887 1 128.72 0 F1 AG7 401 AAA 1 HETATM 35 C C82 AG7 . . . C 2 4.034 -5.997 -13.585 1 113.9 0 C82 AG7 401 AAA 1 HETATM 36 C C83 AG7 . . . C 2 1.411 -2.25 -19.357 1 67.86 0 C83 AG7 401 AAA 1 HETATM 37 C C84 AG7 . . . C 2 1.812 -1.41 -18.143 1 65.41 0 C84 AG7 401 AAA 1 HETATM 38 C C1 AG7 . . . C 2 3.594 -5.781 -10.137 1 134.16 0 C1 AG7 401 AAA 1 HETATM 39 C C2 AG7 . . . C 2 4.34 -6.966 -10.193 1 130.21 0 C2 AG7 401 AAA 1 HETATM 40 C C3 AG7 . . . C 2 3.721 -7.833 -9.373 1 128.28 0 C3 AG7 401 AAA 1 HETATM 41 O O4 AG7 . . . C 2 2.647 -7.225 -8.83 1 135.74 0 O4 AG7 401 AAA 1 HETATM 42 N N5 AG7 . . . C 2 2.574 -5.912 -9.325 1 136.8 0 N5 AG7 401 AAA 1 HETATM 43 C C4 AG7 . . . C 2 3.965 -9.231 -8.957 1 124.85 0 C4 AG7 401 AAA 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 465 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #