data_7P35
#
_model_server_result.job_id            jmVKeD-jkInrnzgnuQx0fg 
_model_server_result.datetime_utc      '2024-11-19 09:35:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7p35 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    7P35 
#
_exptl.entry_id    7P35 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              600.678 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.774 
_cell.angle_gamma         90 
_cell.entry_id            7P35 
_cell.length_a            45.023 
_cell.length_b            54.024 
_cell.length_c            114.067 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7P35 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 145 AAA CYS 145 1_555 C C19 AG7 . AAA AG7 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? 
covale ? covale2 B SG CYS 145 BBB CYS 145 1_555 D C19 AG7 . BBB AG7 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? 
#
_chem_comp.formula           'C31 H41 F N4 O7' 
_chem_comp.formula_weight    600.678 
_chem_comp.id                AG7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RUPINTRIVIR, bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 AG7 sing 1 n n 
C01 O03 AG7 doub 2 n n 
C01 C57 AG7 sing 3 n n 
C02 C04 AG7 sing 4 n n 
C02 H2 AG7 sing 5 n n 
C02 H3 AG7 sing 6 n n 
C04 C05 AG7 sing 7 n n 
C04 C47 AG7 sing 8 n n 
C04 H27 AG7 sing 9 n n 
C05 C06 AG7 sing 10 n n 
C05 H28 AG7 sing 11 n n 
C05 H29 AG7 sing 12 n n 
C06 C07 AG7 doub 13 n y 
C06 C11 AG7 sing 14 n y 
C07 C08 AG7 sing 15 n y 
C07 H30 AG7 sing 16 n n 
C08 C09 AG7 doub 17 n y 
C08 H31 AG7 sing 18 n n 
C09 C10 AG7 sing 19 n y 
C09 F1 AG7 sing 20 n n 
C10 C11 AG7 doub 21 n y 
C10 H33 AG7 sing 22 n n 
C11 H34 AG7 sing 23 n n 
N12 C13 AG7 sing 24 n n 
N12 C47 AG7 sing 25 n n 
N12 H49 AG7 sing 26 n n 
C13 C14 AG7 sing 27 n n 
C13 C19 AG7 sing 28 n n 
C13 H91 AG7 sing 29 n n 
C14 C15 AG7 sing 30 n n 
C14 H35 AG7 sing 31 n n 
C14 H36 AG7 sing 32 n n 
C15 C16 AG7 sing 33 n n 
C15 C84 AG7 sing 34 n n 
C15 H94 AG7 sing 35 n n 
C16 N17 AG7 sing 36 n n 
C16 O18 AG7 doub 37 n n 
N17 C83 AG7 sing 38 n n 
N17 H39 AG7 sing 39 n n 
C19 C20 AG7 sing 40 n n 
C19 H191 AG7 sing 41 n n 
C19 H192 AG7 sing 42 n n 
C20 C21 AG7 sing 43 n n 
C20 H41 AG7 sing 44 n n 
C20 H42 AG7 sing 45 n n 
C21 O22 AG7 sing 46 n n 
C21 O23 AG7 doub 47 n n 
O22 C50 AG7 sing 48 n n 
C47 O48 AG7 doub 49 n n 
C50 C53 AG7 sing 50 n n 
C50 H51 AG7 sing 51 n n 
C50 H52 AG7 sing 52 n n 
C53 H53 AG7 sing 53 n n 
C53 H54 AG7 sing 54 n n 
C53 H56 AG7 sing 55 n n 
C57 N58 AG7 sing 56 n n 
C57 C78 AG7 sing 57 n n 
C57 H77 AG7 sing 58 n n 
N58 C59 AG7 sing 59 n n 
N58 H61 AG7 sing 60 n n 
C59 O60 AG7 doub 61 n n 
C59 C1 AG7 sing 62 n n 
C78 C81 AG7 sing 63 n n 
C78 C82 AG7 sing 64 n n 
C78 H79 AG7 sing 65 n n 
C81 H82 AG7 sing 66 n n 
C81 H84 AG7 sing 67 n n 
C81 H85 AG7 sing 68 n n 
C82 H86 AG7 sing 69 n n 
C82 H87 AG7 sing 70 n n 
C82 H88 AG7 sing 71 n n 
C83 C84 AG7 sing 72 n n 
C83 H89 AG7 sing 73 n n 
C83 H90 AG7 sing 74 n n 
C84 H92 AG7 sing 75 n n 
C84 H93 AG7 sing 76 n n 
C1 C2 AG7 sing 77 n y 
C1 N5 AG7 doub 78 n y 
C2 C3 AG7 doub 79 n y 
C2 H8 AG7 sing 80 n n 
C3 O4 AG7 sing 81 n y 
C3 C4 AG7 sing 82 n n 
O4 N5 AG7 sing 83 n y 
C4 H5 AG7 sing 84 n n 
C4 H6 AG7 sing 85 n n 
C4 H7 AG7 sing 86 n n 
#
_atom_sites.entry_id                     7P35 
_atom_sites.fract_transf_matrix[1][1]    0.022211 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004227 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01851 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008924 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AG7 AAA 1 401 398 AG7 AG7 . 
D 2 AG7 BBB 1 401 398 AG7 AG7 . 
E 3 HOH AAA 1 501 15 HOH HOH . 
E 3 HOH AAA 2 502 3 HOH HOH . 
E 3 HOH AAA 3 503 2 HOH HOH . 
E 3 HOH AAA 4 504 20 HOH HOH . 
E 3 HOH AAA 5 505 16 HOH HOH . 
E 3 HOH AAA 6 506 11 HOH HOH . 
E 3 HOH AAA 7 507 1 HOH HOH . 
E 3 HOH AAA 8 508 17 HOH HOH . 
E 3 HOH AAA 9 509 19 HOH HOH . 
E 3 HOH AAA 10 510 9 HOH HOH . 
E 3 HOH AAA 11 511 7 HOH HOH . 
E 3 HOH AAA 12 512 26 HOH HOH . 
E 3 HOH AAA 13 513 24 HOH HOH . 
E 3 HOH AAA 14 514 8 HOH HOH . 
E 3 HOH AAA 15 515 34 HOH HOH . 
E 3 HOH AAA 16 516 25 HOH HOH . 
E 3 HOH AAA 17 517 6 HOH HOH . 
E 3 HOH AAA 18 518 4 HOH HOH . 
E 3 HOH AAA 19 519 5 HOH HOH . 
F 3 HOH BBB 1 501 31 HOH HOH . 
F 3 HOH BBB 2 502 21 HOH HOH . 
F 3 HOH BBB 3 503 13 HOH HOH . 
F 3 HOH BBB 4 504 22 HOH HOH . 
F 3 HOH BBB 5 505 12 HOH HOH . 
F 3 HOH BBB 6 506 33 HOH HOH . 
F 3 HOH BBB 7 507 23 HOH HOH . 
F 3 HOH BBB 8 508 14 HOH HOH . 
F 3 HOH BBB 9 509 10 HOH HOH . 
F 3 HOH BBB 10 510 28 HOH HOH . 
F 3 HOH BBB 11 511 32 HOH HOH . 
F 3 HOH BBB 12 512 18 HOH HOH . 
F 3 HOH BBB 13 513 30 HOH HOH . 
F 3 HOH BBB 14 514 29 HOH HOH . 
F 3 HOH BBB 15 515 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 AG7 . . . D 2 -36.396 -2.999 -41.75 1 84.44 0 C01 AG7 401 BBB 1 
HETATM 2 C C02 AG7 . . . D 2 -37.177 -1.953 -41.022 1 93.98 0 C02 AG7 401 BBB 1 
HETATM 3 O O03 AG7 . . . D 2 -35.256 -2.794 -42.102 1 59.37 0 O03 AG7 401 BBB 1 
HETATM 4 C C04 AG7 . . . D 2 -36.96 -0.589 -41.654 1 91.73 0 C04 AG7 401 BBB 1 
HETATM 5 C C05 AG7 . . . D 2 -38.202 -0.1 -42.397 1 98.59 0 C05 AG7 401 BBB 1 
HETATM 6 C C06 AG7 . . . D 2 -37.884 0.06 -43.851 1 107.91 0 C06 AG7 401 BBB 1 
HETATM 7 C C07 AG7 . . . D 2 -38.272 -0.892 -44.776 1 122.59 0 C07 AG7 401 BBB 1 
HETATM 8 C C08 AG7 . . . D 2 -37.943 -0.756 -46.115 1 132.82 0 C08 AG7 401 BBB 1 
HETATM 9 C C09 AG7 . . . D 2 -37.194 0.324 -46.486 1 132.25 0 C09 AG7 401 BBB 1 
HETATM 10 C C10 AG7 . . . D 2 -36.764 1.27 -45.607 1 125.79 0 C10 AG7 401 BBB 1 
HETATM 11 C C11 AG7 . . . D 2 -37.103 1.12 -44.274 1 114.64 0 C11 AG7 401 BBB 1 
HETATM 12 N N12 AG7 . . . D 2 -35.239 0.509 -40.373 1 72.38 0 N12 AG7 401 BBB 1 
HETATM 13 C C13 AG7 . . . D 2 -34.657 0.915 -39.092 1 72.74 0 C13 AG7 401 BBB 1 
HETATM 14 C C14 AG7 . . . D 2 -33.578 -0.08 -38.67 1 66.84 0 C14 AG7 401 BBB 1 
HETATM 15 C C15 AG7 . . . D 2 -34.159 -1.398 -38.161 1 62.94 0 C15 AG7 401 BBB 1 
HETATM 16 C C16 AG7 . . . D 2 -33.126 -2.17 -37.371 1 64.13 0 C16 AG7 401 BBB 1 
HETATM 17 N N17 AG7 . . . D 2 -33.726 -2.771 -36.352 1 65.06 0 N17 AG7 401 BBB 1 
HETATM 18 O O18 AG7 . . . D 2 -31.92 -2.207 -37.627 1 68.85 0 O18 AG7 401 BBB 1 
HETATM 19 C C19 AG7 . . . D 2 -34.177 2.371 -39.155 1 62.23 0 C19 AG7 401 BBB 1 
HETATM 20 C C20 AG7 . . . D 2 -35.265 3.337 -39.627 1 62.38 0 C20 AG7 401 BBB 1 
HETATM 21 C C21 AG7 . . . D 2 -35.753 4.28 -38.574 1 66.87 0 C21 AG7 401 BBB 1 
HETATM 22 O O22 AG7 . . . D 2 -37.064 4.506 -38.672 1 74.12 0 O22 AG7 401 BBB 1 
HETATM 23 O O23 AG7 . . . D 2 -35.048 4.78 -37.741 1 74.88 0 O23 AG7 401 BBB 1 
HETATM 24 C C47 AG7 . . . D 2 -36.553 0.322 -40.522 1 84 0 C47 AG7 401 BBB 1 
HETATM 25 O O48 AG7 . . . D 2 -37.397 0.766 -39.743 1 82.58 0 O48 AG7 401 BBB 1 
HETATM 26 C C50 AG7 . . . D 2 -37.513 5.892 -38.696 1 68.29 0 C50 AG7 401 BBB 1 
HETATM 27 C C53 AG7 . . . D 2 -38.606 6.076 -37.705 1 66.65 0 C53 AG7 401 BBB 1 
HETATM 28 C C57 AG7 . . . D 2 -37.122 -4.316 -42.02 1 88.32 0 C57 AG7 401 BBB 1 
HETATM 29 N N58 AG7 . . . D 2 -36.65 -4.973 -43.231 1 97.6 0 N58 AG7 401 BBB 1 
HETATM 30 C C59 AG7 . . . D 2 -37.519 -5.327 -44.184 1 105.91 0 C59 AG7 401 BBB 1 
HETATM 31 O O60 AG7 . . . D 2 -38.573 -4.704 -44.355 1 99.58 0 O60 AG7 401 BBB 1 
HETATM 32 C C78 AG7 . . . D 2 -37.072 -5.242 -40.785 1 88.79 0 C78 AG7 401 BBB 1 
HETATM 33 C C81 AG7 . . . D 2 -37.797 -4.639 -39.586 1 85.04 0 C81 AG7 401 BBB 1 
HETATM 34 F F1 AG7 . . . D 2 -36.873 0.479 -47.797 1 137.56 0 F1 AG7 401 BBB 1 
HETATM 35 C C82 AG7 . . . D 2 -37.633 -6.62 -41.112 1 89.52 0 C82 AG7 401 BBB 1 
HETATM 36 C C83 AG7 . . . D 2 -35.17 -2.573 -36.322 1 60.27 0 C83 AG7 401 BBB 1 
HETATM 37 C C84 AG7 . . . D 2 -35.348 -1.35 -37.207 1 63.42 0 C84 AG7 401 BBB 1 
HETATM 38 C C1 AG7 . . . D 2 -37.21 -6.54 -44.966 1 115.6 0 C1 AG7 401 BBB 1 
HETATM 39 C C2 AG7 . . . D 2 -38.021 -7.675 -45.1 1 117.34 0 C2 AG7 401 BBB 1 
HETATM 40 C C3 AG7 . . . D 2 -37.347 -8.517 -45.904 1 115.11 0 C3 AG7 401 BBB 1 
HETATM 41 O O4 AG7 . . . D 2 -36.178 -7.94 -46.254 1 117.44 0 O4 AG7 401 BBB 1 
HETATM 42 N N5 AG7 . . . D 2 -36.099 -6.674 -45.651 1 109.77 0 N5 AG7 401 BBB 1 
HETATM 43 C C4 AG7 . . . D 2 -37.613 -9.864 -46.456 1 109.21 0 C4 AG7 401 BBB 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           42 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           1150 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#