data_7P39 # _model_server_result.job_id hJyC19V39c6cgLdyFOU17w _model_server_result.datetime_utc '2025-03-05 02:44:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p39 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1301}' # _entry.id 7P39 # _exptl.entry_id 7P39 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7P39 _cell.length_a 107.219 _cell.length_b 133.806 _cell.length_c 147.866 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P39 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,H 1 1 B,D,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GLC BGC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 AC1 GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C BGC 1 D 1 BGC F 3 QPS 2 n C GLC 2 D 2 GLC F 3 QPS 2 n C AC1 3 D 3 AC1 F 3 QPS 2 n D BGC 1 G 1 BGC F 4 QPS 2 n D GLC 2 G 2 GLC F 4 QPS 2 n D AC1 3 G 3 AC1 F 4 QPS # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O4 BGC . D BGC 1 1_555 C C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 C O4 GLC . D GLC 2 1_555 C C1 AC1 . D AC1 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 D O4 BGC . G BGC 1 1_555 D C1 GLC . G GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 D O4 GLC . G GLC 2 1_555 D C1 AC1 . G AC1 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? metalc ? metalc1 A O GLU 237 A GLU 633 1_555 E CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc2 A OE2 GLU 237 A GLU 633 1_555 E CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc3 A OD1 ASP 243 A ASP 639 1_555 E CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc4 A OD2 ASP 243 A ASP 639 1_555 E CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc5 A O HIS 287 A HIS 683 1_555 E CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc6 A OD1 ASN 743 A ASN 1139 1_555 E CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc7 B O GLU 237 B GLU 633 1_555 G CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc8 B OE2 GLU 237 B GLU 633 1_555 G CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc9 B OD1 ASP 243 B ASP 639 1_555 G CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc10 B OD2 ASP 243 B ASP 639 1_555 G CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? metalc ? metalc11 B O HIS 287 B HIS 683 1_555 G CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc12 B OD1 ASN 743 B ASN 1139 1_555 G CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7P39 _atom_sites.fract_transf_matrix[1][1] 0.009327 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007474 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CA A 1 1301 2 CA CA . F 4 SO4 A 1 1302 1 SO4 SO4 . G 3 CA B 1 1301 1 CA CA . H 5 HOH A 1 1401 7 HOH HOH . H 5 HOH A 2 1402 3 HOH HOH . H 5 HOH A 3 1403 15 HOH HOH . H 5 HOH A 4 1404 5 HOH HOH . H 5 HOH A 5 1405 14 HOH HOH . H 5 HOH A 6 1406 16 HOH HOH . H 5 HOH A 7 1407 19 HOH HOH . H 5 HOH A 8 1408 4 HOH HOH . H 5 HOH A 9 1409 6 HOH HOH . H 5 HOH A 10 1410 8 HOH HOH . I 5 HOH B 1 1401 1 HOH HOH . I 5 HOH B 2 1402 10 HOH HOH . I 5 HOH B 3 1403 11 HOH HOH . I 5 HOH B 4 1404 13 HOH HOH . I 5 HOH B 5 1405 12 HOH HOH . I 5 HOH B 6 1406 9 HOH HOH . I 5 HOH B 7 1407 2 HOH HOH . I 5 HOH B 8 1408 18 HOH HOH . I 5 HOH B 9 1409 17 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -0.855 _atom_site.Cartn_y 2.392 _atom_site.Cartn_z 11.342 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 45 _model_server_stats.create_model_time_ms 94 _model_server_stats.query_time_ms 1548 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #