data_7P3A # _model_server_result.job_id 6-fDRZHF8D9yzfCaXUj7Ew _model_server_result.datetime_utc '2024-12-05 00:24:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":204}' # _entry.id 7P3A # _exptl.entry_id 7P3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7P3A _cell.length_a 91.714 _cell.length_b 91.714 _cell.length_c 52.942 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 K N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 21 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 19 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 21 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 19 _struct_conn.ptnr2_symmetry 1_554 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.115 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 229 n n C1 H11 MPD sing 230 n n C1 H12 MPD sing 231 n n C1 H13 MPD sing 232 n n C2 O2 MPD sing 233 n n C2 CM MPD sing 234 n n C2 C3 MPD sing 235 n n O2 HO2 MPD sing 236 n n CM HM1 MPD sing 237 n n CM HM2 MPD sing 238 n n CM HM3 MPD sing 239 n n C3 C4 MPD sing 240 n n C3 H31 MPD sing 241 n n C3 H32 MPD sing 242 n n C4 O4 MPD sing 243 n n C4 C5 MPD sing 244 n n C4 H4 MPD sing 245 n n O4 HO4 MPD sing 246 n n C5 H51 MPD sing 247 n n C5 H52 MPD sing 248 n n C5 H53 MPD sing 249 n n # _atom_sites.entry_id 7P3A _atom_sites.fract_transf_matrix[1][1] 0.010903 _atom_sites.fract_transf_matrix[1][2] 0.006295 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IPA A 1 201 201 IPA IPA . D 2 IPA A 1 202 202 IPA IPA . E 2 IPA A 1 203 203 IPA IPA . F 3 MPD A 1 204 210 MPD MPD . G 4 CL A 1 205 221 CL CL . H 2 IPA B 1 201 201 IPA IPA . I 2 IPA B 1 202 202 IPA IPA . J 2 IPA B 1 203 203 IPA IPA . K 3 MPD B 1 204 210 MPD MPD . L 4 CL B 1 205 221 CL CL . M 5 HOH A 1 301 78 HOH HOH . M 5 HOH A 2 302 73 HOH HOH . M 5 HOH A 3 303 104 HOH HOH . M 5 HOH A 4 304 107 HOH HOH . M 5 HOH A 5 305 1 HOH HOH . M 5 HOH A 6 306 34 HOH HOH . M 5 HOH A 7 307 27 HOH HOH . M 5 HOH A 8 308 75 HOH HOH . M 5 HOH A 9 309 7 HOH HOH . M 5 HOH A 10 310 116 HOH HOH . M 5 HOH A 11 311 96 HOH HOH . M 5 HOH A 12 312 45 HOH HOH . M 5 HOH A 13 313 47 HOH HOH . M 5 HOH A 14 314 62 HOH HOH . M 5 HOH A 15 315 44 HOH HOH . M 5 HOH A 16 316 2 HOH HOH . M 5 HOH A 17 317 58 HOH HOH . M 5 HOH A 18 318 124 HOH HOH . M 5 HOH A 19 319 21 HOH HOH . M 5 HOH A 20 320 76 HOH HOH . M 5 HOH A 21 321 36 HOH HOH . M 5 HOH A 22 322 93 HOH HOH . M 5 HOH A 23 323 123 HOH HOH . M 5 HOH A 24 324 25 HOH HOH . M 5 HOH A 25 325 109 HOH HOH . M 5 HOH A 26 326 72 HOH HOH . M 5 HOH A 27 327 8 HOH HOH . M 5 HOH A 28 328 17 HOH HOH . M 5 HOH A 29 329 127 HOH HOH . M 5 HOH A 30 330 60 HOH HOH . M 5 HOH A 31 331 71 HOH HOH . M 5 HOH A 32 332 37 HOH HOH . M 5 HOH A 33 333 82 HOH HOH . M 5 HOH A 34 334 114 HOH HOH . M 5 HOH A 35 335 29 HOH HOH . M 5 HOH A 36 336 57 HOH HOH . M 5 HOH A 37 337 74 HOH HOH . M 5 HOH A 38 338 48 HOH HOH . M 5 HOH A 39 339 92 HOH HOH . M 5 HOH A 40 340 61 HOH HOH . M 5 HOH A 41 341 56 HOH HOH . M 5 HOH A 42 342 79 HOH HOH . M 5 HOH A 43 343 66 HOH HOH . M 5 HOH A 44 344 113 HOH HOH . M 5 HOH A 45 345 108 HOH HOH . M 5 HOH A 46 346 32 HOH HOH . M 5 HOH A 47 347 40 HOH HOH . M 5 HOH A 48 348 111 HOH HOH . M 5 HOH A 49 349 38 HOH HOH . M 5 HOH A 50 350 110 HOH HOH . M 5 HOH A 51 351 99 HOH HOH . M 5 HOH A 52 352 89 HOH HOH . M 5 HOH A 53 353 112 HOH HOH . M 5 HOH A 54 354 68 HOH HOH . M 5 HOH A 55 355 70 HOH HOH . M 5 HOH A 56 356 42 HOH HOH . M 5 HOH A 57 357 90 HOH HOH . M 5 HOH A 58 358 26 HOH HOH . M 5 HOH A 59 359 94 HOH HOH . M 5 HOH A 60 360 126 HOH HOH . M 5 HOH A 61 361 69 HOH HOH . M 5 HOH A 62 362 86 HOH HOH . M 5 HOH A 63 363 39 HOH HOH . M 5 HOH A 64 364 77 HOH HOH . N 5 HOH B 1 301 53 HOH HOH . N 5 HOH B 2 302 128 HOH HOH . N 5 HOH B 3 303 106 HOH HOH . N 5 HOH B 4 304 59 HOH HOH . N 5 HOH B 5 305 51 HOH HOH . N 5 HOH B 6 306 101 HOH HOH . N 5 HOH B 7 307 35 HOH HOH . N 5 HOH B 8 308 15 HOH HOH . N 5 HOH B 9 309 91 HOH HOH . N 5 HOH B 10 310 16 HOH HOH . N 5 HOH B 11 311 4 HOH HOH . N 5 HOH B 12 312 5 HOH HOH . N 5 HOH B 13 313 23 HOH HOH . N 5 HOH B 14 314 67 HOH HOH . N 5 HOH B 15 315 46 HOH HOH . N 5 HOH B 16 316 18 HOH HOH . N 5 HOH B 17 317 3 HOH HOH . N 5 HOH B 18 318 6 HOH HOH . N 5 HOH B 19 319 28 HOH HOH . N 5 HOH B 20 320 49 HOH HOH . N 5 HOH B 21 321 19 HOH HOH . N 5 HOH B 22 322 20 HOH HOH . N 5 HOH B 23 323 12 HOH HOH . N 5 HOH B 24 324 13 HOH HOH . N 5 HOH B 25 325 11 HOH HOH . N 5 HOH B 26 326 125 HOH HOH . N 5 HOH B 27 327 14 HOH HOH . N 5 HOH B 28 328 122 HOH HOH . N 5 HOH B 29 329 120 HOH HOH . N 5 HOH B 30 330 84 HOH HOH . N 5 HOH B 31 331 102 HOH HOH . N 5 HOH B 32 332 103 HOH HOH . N 5 HOH B 33 333 41 HOH HOH . N 5 HOH B 34 334 31 HOH HOH . N 5 HOH B 35 335 81 HOH HOH . N 5 HOH B 36 336 50 HOH HOH . N 5 HOH B 37 337 63 HOH HOH . N 5 HOH B 38 338 83 HOH HOH . N 5 HOH B 39 339 52 HOH HOH . N 5 HOH B 40 340 80 HOH HOH . N 5 HOH B 41 341 100 HOH HOH . N 5 HOH B 42 342 24 HOH HOH . N 5 HOH B 43 343 43 HOH HOH . N 5 HOH B 44 344 95 HOH HOH . N 5 HOH B 45 345 33 HOH HOH . N 5 HOH B 46 346 30 HOH HOH . N 5 HOH B 47 347 105 HOH HOH . N 5 HOH B 48 348 115 HOH HOH . N 5 HOH B 49 349 10 HOH HOH . N 5 HOH B 50 350 55 HOH HOH . N 5 HOH B 51 351 118 HOH HOH . N 5 HOH B 52 352 65 HOH HOH . N 5 HOH B 53 353 54 HOH HOH . N 5 HOH B 54 354 98 HOH HOH . N 5 HOH B 55 355 117 HOH HOH . N 5 HOH B 56 356 22 HOH HOH . N 5 HOH B 57 357 119 HOH HOH . N 5 HOH B 58 358 64 HOH HOH . N 5 HOH B 59 359 121 HOH HOH . N 5 HOH B 60 360 97 HOH HOH . N 5 HOH B 61 361 9 HOH HOH . N 5 HOH B 62 362 87 HOH HOH . N 5 HOH B 63 363 88 HOH HOH . N 5 HOH B 64 364 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . K 3 31.841 -40.625 19.46 1 51.82 ? C1 MPD 204 B 1 HETATM 2 C C2 MPD . . . K 3 32.49 -40.536 18.09 1 58.41 ? C2 MPD 204 B 1 HETATM 3 O O2 MPD . . . K 3 31.496 -40.665 17.086 1 51.66 ? O2 MPD 204 B 1 HETATM 4 C CM MPD . . . K 3 33.14 -39.185 17.909 1 49.28 ? CM MPD 204 B 1 HETATM 5 C C3 MPD . . . K 3 33.471 -41.682 17.916 1 53.05 ? C3 MPD 204 B 1 HETATM 6 C C4 MPD . . . K 3 32.744 -43.023 18.015 1 67.04 ? C4 MPD 204 B 1 HETATM 7 O O4 MPD . . . K 3 33.065 -43.863 16.913 1 63.8 ? O4 MPD 204 B 1 HETATM 8 C C5 MPD . . . K 3 33.056 -43.808 19.281 1 63.99 ? C5 MPD 204 B 1 HETATM 9 H H11 MPD . . . K 3 31.326 -41.546 19.547 1 62.18 ? H11 MPD 204 B 1 HETATM 10 H H12 MPD . . . K 3 31.158 -39.825 19.58 1 62.18 ? H12 MPD 204 B 1 HETATM 11 H H13 MPD . . . K 3 32.588 -40.566 20.208 1 62.18 ? H13 MPD 204 B 1 HETATM 12 H HO2 MPD . . . K 3 31.913 -40.627 16.214 1 61.99 ? HO2 MPD 204 B 1 HETATM 13 H HM1 MPD . . . K 3 33.996 -39.119 18.529 1 59.14 ? HM1 MPD 204 B 1 HETATM 14 H HM2 MPD . . . K 3 33.426 -39.062 16.897 1 59.14 ? HM2 MPD 204 B 1 HETATM 15 H HM3 MPD . . . K 3 32.453 -38.425 18.177 1 59.14 ? HM3 MPD 204 B 1 HETATM 16 H H31 MPD . . . K 3 33.96 -41.602 16.943 1 63.66 ? H31 MPD 204 B 1 HETATM 17 H H32 MPD . . . K 3 34.243 -41.626 18.687 1 63.66 ? H32 MPD 204 B 1 HETATM 18 H H4 MPD . . . K 3 31.664 -42.819 18.005 1 80.45 ? H4 MPD 204 B 1 HETATM 19 H HO4 MPD . . . K 3 34.018 -44.03 16.902 1 76.56 ? HO4 MPD 204 B 1 HETATM 20 H H51 MPD . . . K 3 32.832 -43.215 20.129 1 76.79 ? H51 MPD 204 B 1 HETATM 21 H H52 MPD . . . K 3 34.083 -44.067 19.292 1 76.79 ? H52 MPD 204 B 1 HETATM 22 H H53 MPD . . . K 3 32.471 -44.691 19.302 1 76.79 ? H53 MPD 204 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 73 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #