data_7P4E # _model_server_result.job_id Tzg6L1Tprm70zDxCSLrXog _model_server_result.datetime_utc '2024-11-02 15:29:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 7P4E # _exptl.entry_id 7P4E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7P4E _cell.length_a 63.013 _cell.length_b 63.013 _cell.length_c 167.621 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P4E _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 148 n n C1 C2 EDO sing 149 n n C1 H11 EDO sing 150 n n C1 H12 EDO sing 151 n n O1 HO1 EDO sing 152 n n C2 O2 EDO sing 153 n n C2 H21 EDO sing 154 n n C2 H22 EDO sing 155 n n O2 HO2 EDO sing 156 n n # _atom_sites.entry_id 7P4E _atom_sites.fract_transf_matrix[1][1] 0.01587 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5IV A 1 501 501 5IV FL2 . C 3 SO4 A 1 502 502 SO4 SO4 . D 4 EDO A 1 503 503 EDO EDO . E 4 EDO A 1 504 504 EDO EDO . F 4 EDO A 1 505 505 EDO EDO . G 4 EDO A 1 506 1 EDO EDO . H 4 EDO A 1 507 2 EDO EDO . I 4 EDO A 1 508 3 EDO EDO . J 5 HOH A 1 601 22 HOH HOH . J 5 HOH A 2 602 47 HOH HOH . J 5 HOH A 3 603 21 HOH HOH . J 5 HOH A 4 604 10 HOH HOH . J 5 HOH A 5 605 8 HOH HOH . J 5 HOH A 6 606 33 HOH HOH . J 5 HOH A 7 607 16 HOH HOH . J 5 HOH A 8 608 13 HOH HOH . J 5 HOH A 9 609 7 HOH HOH . J 5 HOH A 10 610 41 HOH HOH . J 5 HOH A 11 611 28 HOH HOH . J 5 HOH A 12 612 17 HOH HOH . J 5 HOH A 13 613 25 HOH HOH . J 5 HOH A 14 614 6 HOH HOH . J 5 HOH A 15 615 12 HOH HOH . J 5 HOH A 16 616 3 HOH HOH . J 5 HOH A 17 617 38 HOH HOH . J 5 HOH A 18 618 5 HOH HOH . J 5 HOH A 19 619 11 HOH HOH . J 5 HOH A 20 620 37 HOH HOH . J 5 HOH A 21 621 49 HOH HOH . J 5 HOH A 22 622 46 HOH HOH . J 5 HOH A 23 623 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 -8.821 15.779 -21.544 1 75.01 ? C1 EDO 505 A 1 HETATM 2 O O1 EDO . . . F 4 -9.194 15.395 -22.875 1 53.16 ? O1 EDO 505 A 1 HETATM 3 C C2 EDO . . . F 4 -7.933 14.78 -20.859 1 73.15 ? C2 EDO 505 A 1 HETATM 4 O O2 EDO . . . F 4 -6.709 15.344 -20.401 1 90.71 ? O2 EDO 505 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #