data_7P52 # _model_server_result.job_id JsA3B7c4v2g7IfCoNdvqwg _model_server_result.datetime_utc '2024-11-06 00:03:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p52 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 7P52 # _exptl.entry_id 7P52 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7P52 _cell.length_a 89.053 _cell.length_b 89.053 _cell.length_c 98.059 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P52 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FME 1 A FME 1 1_555 A N LYS 2 A LYS 2 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C FME 1 A FME 1 1_555 A N LYS 2 A LYS 2 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A OE1 GLN 39 A GLN 39 1_555 F MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc2 B O1G ATP . A ATP 301 1_555 F MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc3 B O1B ATP . A ATP 301 1_555 F MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc4 B O1A ATP . A ATP 301 1_555 F MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc5 C O2 AKG . A AKG 302 1_555 F MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc6 C O5 AKG . A AKG 302 1_555 F MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 314 n n N O2 NO3 sing 315 n n N O3 NO3 sing 316 n n # _atom_sites.entry_id 7P52 _atom_sites.fract_transf_matrix[1][1] 0.011229 _atom_sites.fract_transf_matrix[1][2] 0.006483 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012966 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 301 301 ATP ATP . C 3 AKG A 1 302 401 AKG AKG . D 4 GOL A 1 303 501 GOL GOL . E 5 NO3 A 1 304 601 NO3 NO3 . F 6 MG A 1 305 2 MG MG . G 7 HOH A 1 401 63 HOH HOH . G 7 HOH A 2 402 113 HOH HOH . G 7 HOH A 3 403 142 HOH HOH . G 7 HOH A 4 404 91 HOH HOH . G 7 HOH A 5 405 128 HOH HOH . G 7 HOH A 6 406 74 HOH HOH . G 7 HOH A 7 407 71 HOH HOH . G 7 HOH A 8 408 36 HOH HOH . G 7 HOH A 9 409 12 HOH HOH . G 7 HOH A 10 410 102 HOH HOH . G 7 HOH A 11 411 42 HOH HOH . G 7 HOH A 12 412 104 HOH HOH . G 7 HOH A 13 413 13 HOH HOH . G 7 HOH A 14 414 123 HOH HOH . G 7 HOH A 15 415 51 HOH HOH . G 7 HOH A 16 416 188 HOH HOH . G 7 HOH A 17 417 41 HOH HOH . G 7 HOH A 18 418 2 HOH HOH . G 7 HOH A 19 419 87 HOH HOH . G 7 HOH A 20 420 94 HOH HOH . G 7 HOH A 21 421 53 HOH HOH . G 7 HOH A 22 422 77 HOH HOH . G 7 HOH A 23 423 54 HOH HOH . G 7 HOH A 24 424 22 HOH HOH . G 7 HOH A 25 425 43 HOH HOH . G 7 HOH A 26 426 92 HOH HOH . G 7 HOH A 27 427 96 HOH HOH . G 7 HOH A 28 428 20 HOH HOH . G 7 HOH A 29 429 4 HOH HOH . G 7 HOH A 30 430 156 HOH HOH . G 7 HOH A 31 431 11 HOH HOH . G 7 HOH A 32 432 29 HOH HOH . G 7 HOH A 33 433 37 HOH HOH . G 7 HOH A 34 434 6 HOH HOH . G 7 HOH A 35 435 46 HOH HOH . G 7 HOH A 36 436 3 HOH HOH . G 7 HOH A 37 437 23 HOH HOH . G 7 HOH A 38 438 59 HOH HOH . G 7 HOH A 39 439 112 HOH HOH . G 7 HOH A 40 440 39 HOH HOH . G 7 HOH A 41 441 109 HOH HOH . G 7 HOH A 42 442 75 HOH HOH . G 7 HOH A 43 443 60 HOH HOH . G 7 HOH A 44 444 126 HOH HOH . G 7 HOH A 45 445 33 HOH HOH . G 7 HOH A 46 446 35 HOH HOH . G 7 HOH A 47 447 18 HOH HOH . G 7 HOH A 48 448 90 HOH HOH . G 7 HOH A 49 449 181 HOH HOH . G 7 HOH A 50 450 21 HOH HOH . G 7 HOH A 51 451 7 HOH HOH . G 7 HOH A 52 452 28 HOH HOH . G 7 HOH A 53 453 14 HOH HOH . G 7 HOH A 54 454 27 HOH HOH . G 7 HOH A 55 455 9 HOH HOH . G 7 HOH A 56 456 55 HOH HOH . G 7 HOH A 57 457 30 HOH HOH . G 7 HOH A 58 458 15 HOH HOH . G 7 HOH A 59 459 64 HOH HOH . G 7 HOH A 60 460 170 HOH HOH . G 7 HOH A 61 461 25 HOH HOH . G 7 HOH A 62 462 78 HOH HOH . G 7 HOH A 63 463 26 HOH HOH . G 7 HOH A 64 464 16 HOH HOH . G 7 HOH A 65 465 48 HOH HOH . G 7 HOH A 66 466 52 HOH HOH . G 7 HOH A 67 467 19 HOH HOH . G 7 HOH A 68 468 169 HOH HOH . G 7 HOH A 69 469 56 HOH HOH . G 7 HOH A 70 470 32 HOH HOH . G 7 HOH A 71 471 45 HOH HOH . G 7 HOH A 72 472 24 HOH HOH . G 7 HOH A 73 473 110 HOH HOH . G 7 HOH A 74 474 179 HOH HOH . G 7 HOH A 75 475 149 HOH HOH . G 7 HOH A 76 476 187 HOH HOH . G 7 HOH A 77 477 17 HOH HOH . G 7 HOH A 78 478 145 HOH HOH . G 7 HOH A 79 479 80 HOH HOH . G 7 HOH A 80 480 172 HOH HOH . G 7 HOH A 81 481 50 HOH HOH . G 7 HOH A 82 482 165 HOH HOH . G 7 HOH A 83 483 163 HOH HOH . G 7 HOH A 84 484 5 HOH HOH . G 7 HOH A 85 485 10 HOH HOH . G 7 HOH A 86 486 1 HOH HOH . G 7 HOH A 87 487 79 HOH HOH . G 7 HOH A 88 488 111 HOH HOH . G 7 HOH A 89 489 138 HOH HOH . G 7 HOH A 90 490 40 HOH HOH . G 7 HOH A 91 491 34 HOH HOH . G 7 HOH A 92 492 81 HOH HOH . G 7 HOH A 93 493 31 HOH HOH . G 7 HOH A 94 494 47 HOH HOH . G 7 HOH A 95 495 61 HOH HOH . G 7 HOH A 96 496 8 HOH HOH . G 7 HOH A 97 497 73 HOH HOH . G 7 HOH A 98 498 154 HOH HOH . G 7 HOH A 99 499 134 HOH HOH . G 7 HOH A 100 500 116 HOH HOH . G 7 HOH A 101 501 158 HOH HOH . G 7 HOH A 102 502 152 HOH HOH . G 7 HOH A 103 503 97 HOH HOH . G 7 HOH A 104 504 106 HOH HOH . G 7 HOH A 105 505 186 HOH HOH . G 7 HOH A 106 506 89 HOH HOH . G 7 HOH A 107 507 118 HOH HOH . G 7 HOH A 108 508 185 HOH HOH . G 7 HOH A 109 509 44 HOH HOH . G 7 HOH A 110 510 136 HOH HOH . G 7 HOH A 111 511 144 HOH HOH . G 7 HOH A 112 512 147 HOH HOH . G 7 HOH A 113 513 105 HOH HOH . G 7 HOH A 114 514 58 HOH HOH . G 7 HOH A 115 515 76 HOH HOH . G 7 HOH A 116 516 129 HOH HOH . G 7 HOH A 117 517 155 HOH HOH . G 7 HOH A 118 518 140 HOH HOH . G 7 HOH A 119 519 182 HOH HOH . G 7 HOH A 120 520 93 HOH HOH . G 7 HOH A 121 521 88 HOH HOH . G 7 HOH A 122 522 127 HOH HOH . G 7 HOH A 123 523 177 HOH HOH . G 7 HOH A 124 524 72 HOH HOH . G 7 HOH A 125 525 176 HOH HOH . G 7 HOH A 126 526 175 HOH HOH . G 7 HOH A 127 527 65 HOH HOH . G 7 HOH A 128 528 164 HOH HOH . G 7 HOH A 129 529 99 HOH HOH . G 7 HOH A 130 530 57 HOH HOH . G 7 HOH A 131 531 68 HOH HOH . G 7 HOH A 132 532 161 HOH HOH . G 7 HOH A 133 533 184 HOH HOH . G 7 HOH A 134 534 38 HOH HOH . G 7 HOH A 135 535 131 HOH HOH . G 7 HOH A 136 536 67 HOH HOH . G 7 HOH A 137 537 121 HOH HOH . G 7 HOH A 138 538 98 HOH HOH . G 7 HOH A 139 539 180 HOH HOH . G 7 HOH A 140 540 114 HOH HOH . G 7 HOH A 141 541 107 HOH HOH . G 7 HOH A 142 542 157 HOH HOH . G 7 HOH A 143 543 167 HOH HOH . G 7 HOH A 144 544 115 HOH HOH . G 7 HOH A 145 545 108 HOH HOH . G 7 HOH A 146 546 183 HOH HOH . G 7 HOH A 147 547 62 HOH HOH . G 7 HOH A 148 548 122 HOH HOH . G 7 HOH A 149 549 146 HOH HOH . G 7 HOH A 150 550 69 HOH HOH . G 7 HOH A 151 551 103 HOH HOH . G 7 HOH A 152 552 82 HOH HOH . G 7 HOH A 153 553 66 HOH HOH . G 7 HOH A 154 554 95 HOH HOH . G 7 HOH A 155 555 178 HOH HOH . G 7 HOH A 156 556 166 HOH HOH . G 7 HOH A 157 557 171 HOH HOH . G 7 HOH A 158 558 86 HOH HOH . G 7 HOH A 159 559 132 HOH HOH . G 7 HOH A 160 560 162 HOH HOH . G 7 HOH A 161 561 84 HOH HOH . G 7 HOH A 162 562 153 HOH HOH . G 7 HOH A 163 563 83 HOH HOH . G 7 HOH A 164 564 101 HOH HOH . G 7 HOH A 165 565 159 HOH HOH . G 7 HOH A 166 566 168 HOH HOH . G 7 HOH A 167 567 85 HOH HOH . G 7 HOH A 168 568 143 HOH HOH . G 7 HOH A 169 569 130 HOH HOH . G 7 HOH A 170 570 124 HOH HOH . G 7 HOH A 171 571 160 HOH HOH . G 7 HOH A 172 572 141 HOH HOH . G 7 HOH A 173 573 150 HOH HOH . G 7 HOH A 174 574 70 HOH HOH . G 7 HOH A 175 575 173 HOH HOH . G 7 HOH A 176 576 119 HOH HOH . G 7 HOH A 177 577 174 HOH HOH . G 7 HOH A 178 578 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . E 5 -0.003 -0.005 -16.724 0.3 32.03 ? N NO3 304 A 1 HETATM 2 O O1 NO3 . . . E 5 -1.247 0.075 -17.152 0.3 31.95 ? O1 NO3 304 A 1 HETATM 3 O O2 NO3 . . . E 5 0.686 1.032 -17.157 0.3 31.86 ? O2 NO3 304 A 1 HETATM 4 O O3 NO3 . . . E 5 0.548 -1.121 -17.155 0.3 32.76 ? O3 NO3 304 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #