data_7P5E # _model_server_result.job_id PoxrqoRtarsMjHGsdrJf9Q _model_server_result.datetime_utc '2024-11-22 10:40:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p5e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 7P5E # _exptl.entry_id 7P5E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7P5E _cell.length_a 103.569 _cell.length_b 103.569 _cell.length_c 56.069 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P5E _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 129 n n S C1 DMS sing 130 n n S C2 DMS sing 131 n n C1 H11 DMS sing 132 n n C1 H12 DMS sing 133 n n C1 H13 DMS sing 134 n n C2 H21 DMS sing 135 n n C2 H22 DMS sing 136 n n C2 H23 DMS sing 137 n n # _atom_sites.entry_id 7P5E _atom_sites.fract_transf_matrix[1][1] 0.009655 _atom_sites.fract_transf_matrix[1][2] 0.005575 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 701 302 DMS DMS . C 3 CL A 1 702 303 CL CL . D 4 5VX A 1 703 1 5VX L01 . E 5 HOH A 1 801 106 HOH HOH . E 5 HOH A 2 802 294 HOH HOH . E 5 HOH A 3 803 258 HOH HOH . E 5 HOH A 4 804 289 HOH HOH . E 5 HOH A 5 805 254 HOH HOH . E 5 HOH A 6 806 145 HOH HOH . E 5 HOH A 7 807 274 HOH HOH . E 5 HOH A 8 808 16 HOH HOH . E 5 HOH A 9 809 59 HOH HOH . E 5 HOH A 10 810 195 HOH HOH . E 5 HOH A 11 811 17 HOH HOH . E 5 HOH A 12 812 56 HOH HOH . E 5 HOH A 13 813 141 HOH HOH . E 5 HOH A 14 814 180 HOH HOH . E 5 HOH A 15 815 115 HOH HOH . E 5 HOH A 16 816 249 HOH HOH . E 5 HOH A 17 817 193 HOH HOH . E 5 HOH A 18 818 116 HOH HOH . E 5 HOH A 19 819 220 HOH HOH . E 5 HOH A 20 820 58 HOH HOH . E 5 HOH A 21 821 55 HOH HOH . E 5 HOH A 22 822 95 HOH HOH . E 5 HOH A 23 823 285 HOH HOH . E 5 HOH A 24 824 81 HOH HOH . E 5 HOH A 25 825 160 HOH HOH . E 5 HOH A 26 826 225 HOH HOH . E 5 HOH A 27 827 78 HOH HOH . E 5 HOH A 28 828 199 HOH HOH . E 5 HOH A 29 829 250 HOH HOH . E 5 HOH A 30 830 5 HOH HOH . E 5 HOH A 31 831 214 HOH HOH . E 5 HOH A 32 832 38 HOH HOH . E 5 HOH A 33 833 86 HOH HOH . E 5 HOH A 34 834 142 HOH HOH . E 5 HOH A 35 835 159 HOH HOH . E 5 HOH A 36 836 138 HOH HOH . E 5 HOH A 37 837 65 HOH HOH . E 5 HOH A 38 838 27 HOH HOH . E 5 HOH A 39 839 77 HOH HOH . E 5 HOH A 40 840 127 HOH HOH . E 5 HOH A 41 841 170 HOH HOH . E 5 HOH A 42 842 4 HOH HOH . E 5 HOH A 43 843 121 HOH HOH . E 5 HOH A 44 844 273 HOH HOH . E 5 HOH A 45 845 71 HOH HOH . E 5 HOH A 46 846 227 HOH HOH . E 5 HOH A 47 847 40 HOH HOH . E 5 HOH A 48 848 147 HOH HOH . E 5 HOH A 49 849 297 HOH HOH . E 5 HOH A 50 850 66 HOH HOH . E 5 HOH A 51 851 309 HOH HOH . E 5 HOH A 52 852 126 HOH HOH . E 5 HOH A 53 853 6 HOH HOH . E 5 HOH A 54 854 84 HOH HOH . E 5 HOH A 55 855 129 HOH HOH . E 5 HOH A 56 856 8 HOH HOH . E 5 HOH A 57 857 163 HOH HOH . E 5 HOH A 58 858 33 HOH HOH . E 5 HOH A 59 859 62 HOH HOH . E 5 HOH A 60 860 101 HOH HOH . E 5 HOH A 61 861 290 HOH HOH . E 5 HOH A 62 862 130 HOH HOH . E 5 HOH A 63 863 64 HOH HOH . E 5 HOH A 64 864 15 HOH HOH . E 5 HOH A 65 865 286 HOH HOH . E 5 HOH A 66 866 23 HOH HOH . E 5 HOH A 67 867 89 HOH HOH . E 5 HOH A 68 868 20 HOH HOH . E 5 HOH A 69 869 49 HOH HOH . E 5 HOH A 70 870 148 HOH HOH . E 5 HOH A 71 871 144 HOH HOH . E 5 HOH A 72 872 230 HOH HOH . E 5 HOH A 73 873 31 HOH HOH . E 5 HOH A 74 874 28 HOH HOH . E 5 HOH A 75 875 206 HOH HOH . E 5 HOH A 76 876 63 HOH HOH . E 5 HOH A 77 877 72 HOH HOH . E 5 HOH A 78 878 197 HOH HOH . E 5 HOH A 79 879 213 HOH HOH . E 5 HOH A 80 880 2 HOH HOH . E 5 HOH A 81 881 244 HOH HOH . E 5 HOH A 82 882 14 HOH HOH . E 5 HOH A 83 883 232 HOH HOH . E 5 HOH A 84 884 208 HOH HOH . E 5 HOH A 85 885 210 HOH HOH . E 5 HOH A 86 886 3 HOH HOH . E 5 HOH A 87 887 184 HOH HOH . E 5 HOH A 88 888 99 HOH HOH . E 5 HOH A 89 889 271 HOH HOH . E 5 HOH A 90 890 29 HOH HOH . E 5 HOH A 91 891 79 HOH HOH . E 5 HOH A 92 892 311 HOH HOH . E 5 HOH A 93 893 312 HOH HOH . E 5 HOH A 94 894 1 HOH HOH . E 5 HOH A 95 895 39 HOH HOH . E 5 HOH A 96 896 85 HOH HOH . E 5 HOH A 97 897 22 HOH HOH . E 5 HOH A 98 898 13 HOH HOH . E 5 HOH A 99 899 243 HOH HOH . E 5 HOH A 100 900 104 HOH HOH . E 5 HOH A 101 901 70 HOH HOH . E 5 HOH A 102 902 67 HOH HOH . E 5 HOH A 103 903 7 HOH HOH . E 5 HOH A 104 904 45 HOH HOH . E 5 HOH A 105 905 50 HOH HOH . E 5 HOH A 106 906 156 HOH HOH . E 5 HOH A 107 907 92 HOH HOH . E 5 HOH A 108 908 26 HOH HOH . E 5 HOH A 109 909 304 HOH HOH . E 5 HOH A 110 910 221 HOH HOH . E 5 HOH A 111 911 93 HOH HOH . E 5 HOH A 112 912 51 HOH HOH . E 5 HOH A 113 913 133 HOH HOH . E 5 HOH A 114 914 134 HOH HOH . E 5 HOH A 115 915 179 HOH HOH . E 5 HOH A 116 916 91 HOH HOH . E 5 HOH A 117 917 34 HOH HOH . E 5 HOH A 118 918 186 HOH HOH . E 5 HOH A 119 919 10 HOH HOH . E 5 HOH A 120 920 120 HOH HOH . E 5 HOH A 121 921 83 HOH HOH . E 5 HOH A 122 922 44 HOH HOH . E 5 HOH A 123 923 82 HOH HOH . E 5 HOH A 124 924 46 HOH HOH . E 5 HOH A 125 925 107 HOH HOH . E 5 HOH A 126 926 41 HOH HOH . E 5 HOH A 127 927 74 HOH HOH . E 5 HOH A 128 928 298 HOH HOH . E 5 HOH A 129 929 119 HOH HOH . E 5 HOH A 130 930 2 HOH HOH . E 5 HOH A 131 931 5 HOH HOH . E 5 HOH A 132 932 42 HOH HOH . E 5 HOH A 133 933 94 HOH HOH . E 5 HOH A 134 934 57 HOH HOH . E 5 HOH A 135 935 132 HOH HOH . E 5 HOH A 136 936 11 HOH HOH . E 5 HOH A 137 937 205 HOH HOH . E 5 HOH A 138 938 218 HOH HOH . E 5 HOH A 139 939 97 HOH HOH . E 5 HOH A 140 940 187 HOH HOH . E 5 HOH A 141 941 174 HOH HOH . E 5 HOH A 142 942 185 HOH HOH . E 5 HOH A 143 943 69 HOH HOH . E 5 HOH A 144 944 136 HOH HOH . E 5 HOH A 145 945 76 HOH HOH . E 5 HOH A 146 946 173 HOH HOH . E 5 HOH A 147 947 60 HOH HOH . E 5 HOH A 148 948 310 HOH HOH . E 5 HOH A 149 949 308 HOH HOH . E 5 HOH A 150 950 292 HOH HOH . E 5 HOH A 151 951 19 HOH HOH . E 5 HOH A 152 952 24 HOH HOH . E 5 HOH A 153 953 207 HOH HOH . E 5 HOH A 154 954 73 HOH HOH . E 5 HOH A 155 955 43 HOH HOH . E 5 HOH A 156 956 137 HOH HOH . E 5 HOH A 157 957 48 HOH HOH . E 5 HOH A 158 958 305 HOH HOH . E 5 HOH A 159 959 30 HOH HOH . E 5 HOH A 160 960 54 HOH HOH . E 5 HOH A 161 961 102 HOH HOH . E 5 HOH A 162 962 238 HOH HOH . E 5 HOH A 163 963 259 HOH HOH . E 5 HOH A 164 964 223 HOH HOH . E 5 HOH A 165 965 9 HOH HOH . E 5 HOH A 166 966 175 HOH HOH . E 5 HOH A 167 967 260 HOH HOH . E 5 HOH A 168 968 18 HOH HOH . E 5 HOH A 169 969 87 HOH HOH . E 5 HOH A 170 970 183 HOH HOH . E 5 HOH A 171 971 47 HOH HOH . E 5 HOH A 172 972 140 HOH HOH . E 5 HOH A 173 973 149 HOH HOH . E 5 HOH A 174 974 216 HOH HOH . E 5 HOH A 175 975 1 HOH HOH . E 5 HOH A 176 976 6 HOH HOH . E 5 HOH A 177 977 111 HOH HOH . E 5 HOH A 178 978 128 HOH HOH . E 5 HOH A 179 979 154 HOH HOH . E 5 HOH A 180 980 165 HOH HOH . E 5 HOH A 181 981 122 HOH HOH . E 5 HOH A 182 982 96 HOH HOH . E 5 HOH A 183 983 176 HOH HOH . E 5 HOH A 184 984 228 HOH HOH . E 5 HOH A 185 985 146 HOH HOH . E 5 HOH A 186 986 194 HOH HOH . E 5 HOH A 187 987 217 HOH HOH . E 5 HOH A 188 988 192 HOH HOH . E 5 HOH A 189 989 25 HOH HOH . E 5 HOH A 190 990 171 HOH HOH . E 5 HOH A 191 991 153 HOH HOH . E 5 HOH A 192 992 53 HOH HOH . E 5 HOH A 193 993 12 HOH HOH . E 5 HOH A 194 994 241 HOH HOH . E 5 HOH A 195 995 151 HOH HOH . E 5 HOH A 196 996 155 HOH HOH . E 5 HOH A 197 997 35 HOH HOH . E 5 HOH A 198 998 265 HOH HOH . E 5 HOH A 199 999 21 HOH HOH . E 5 HOH A 200 1000 275 HOH HOH . E 5 HOH A 201 1001 52 HOH HOH . E 5 HOH A 202 1002 198 HOH HOH . E 5 HOH A 203 1003 36 HOH HOH . E 5 HOH A 204 1004 124 HOH HOH . E 5 HOH A 205 1005 307 HOH HOH . E 5 HOH A 206 1006 284 HOH HOH . E 5 HOH A 207 1007 164 HOH HOH . E 5 HOH A 208 1008 269 HOH HOH . E 5 HOH A 209 1009 236 HOH HOH . E 5 HOH A 210 1010 181 HOH HOH . E 5 HOH A 211 1011 143 HOH HOH . E 5 HOH A 212 1012 252 HOH HOH . E 5 HOH A 213 1013 240 HOH HOH . E 5 HOH A 214 1014 37 HOH HOH . E 5 HOH A 215 1015 276 HOH HOH . E 5 HOH A 216 1016 248 HOH HOH . E 5 HOH A 217 1017 123 HOH HOH . E 5 HOH A 218 1018 233 HOH HOH . E 5 HOH A 219 1019 135 HOH HOH . E 5 HOH A 220 1020 296 HOH HOH . E 5 HOH A 221 1021 270 HOH HOH . E 5 HOH A 222 1022 161 HOH HOH . E 5 HOH A 223 1023 272 HOH HOH . E 5 HOH A 224 1024 255 HOH HOH . E 5 HOH A 225 1025 114 HOH HOH . E 5 HOH A 226 1026 125 HOH HOH . E 5 HOH A 227 1027 235 HOH HOH . E 5 HOH A 228 1028 245 HOH HOH . E 5 HOH A 229 1029 224 HOH HOH . E 5 HOH A 230 1030 226 HOH HOH . E 5 HOH A 231 1031 105 HOH HOH . E 5 HOH A 232 1032 202 HOH HOH . E 5 HOH A 233 1033 166 HOH HOH . E 5 HOH A 234 1034 4 HOH HOH . E 5 HOH A 235 1035 169 HOH HOH . E 5 HOH A 236 1036 313 HOH HOH . E 5 HOH A 237 1037 113 HOH HOH . E 5 HOH A 238 1038 300 HOH HOH . E 5 HOH A 239 1039 196 HOH HOH . E 5 HOH A 240 1040 117 HOH HOH . E 5 HOH A 241 1041 262 HOH HOH . E 5 HOH A 242 1042 280 HOH HOH . E 5 HOH A 243 1043 100 HOH HOH . E 5 HOH A 244 1044 191 HOH HOH . E 5 HOH A 245 1045 211 HOH HOH . E 5 HOH A 246 1046 306 HOH HOH . E 5 HOH A 247 1047 152 HOH HOH . E 5 HOH A 248 1048 282 HOH HOH . E 5 HOH A 249 1049 158 HOH HOH . E 5 HOH A 250 1050 7 HOH HOH . E 5 HOH A 251 1051 88 HOH HOH . E 5 HOH A 252 1052 263 HOH HOH . E 5 HOH A 253 1053 299 HOH HOH . E 5 HOH A 254 1054 189 HOH HOH . E 5 HOH A 255 1055 253 HOH HOH . E 5 HOH A 256 1056 287 HOH HOH . E 5 HOH A 257 1057 190 HOH HOH . E 5 HOH A 258 1058 182 HOH HOH . E 5 HOH A 259 1059 118 HOH HOH . E 5 HOH A 260 1060 266 HOH HOH . E 5 HOH A 261 1061 242 HOH HOH . E 5 HOH A 262 1062 277 HOH HOH . E 5 HOH A 263 1063 219 HOH HOH . E 5 HOH A 264 1064 257 HOH HOH . E 5 HOH A 265 1065 201 HOH HOH . E 5 HOH A 266 1066 177 HOH HOH . E 5 HOH A 267 1067 288 HOH HOH . E 5 HOH A 268 1068 209 HOH HOH . E 5 HOH A 269 1069 279 HOH HOH . E 5 HOH A 270 1070 278 HOH HOH . E 5 HOH A 271 1071 139 HOH HOH . E 5 HOH A 272 1072 234 HOH HOH . E 5 HOH A 273 1073 246 HOH HOH . E 5 HOH A 274 1074 109 HOH HOH . E 5 HOH A 275 1075 261 HOH HOH . E 5 HOH A 276 1076 131 HOH HOH . E 5 HOH A 277 1077 281 HOH HOH . E 5 HOH A 278 1078 239 HOH HOH . E 5 HOH A 279 1079 229 HOH HOH . E 5 HOH A 280 1080 108 HOH HOH . E 5 HOH A 281 1081 61 HOH HOH . E 5 HOH A 282 1082 256 HOH HOH . E 5 HOH A 283 1083 212 HOH HOH . E 5 HOH A 284 1084 204 HOH HOH . E 5 HOH A 285 1085 162 HOH HOH . E 5 HOH A 286 1086 110 HOH HOH . E 5 HOH A 287 1087 90 HOH HOH . E 5 HOH A 288 1088 172 HOH HOH . E 5 HOH A 289 1089 112 HOH HOH . E 5 HOH A 290 1090 98 HOH HOH . E 5 HOH A 291 1091 80 HOH HOH . E 5 HOH A 292 1092 293 HOH HOH . E 5 HOH A 293 1093 150 HOH HOH . E 5 HOH A 294 1094 157 HOH HOH . E 5 HOH A 295 1095 75 HOH HOH . E 5 HOH A 296 1096 103 HOH HOH . E 5 HOH A 297 1097 68 HOH HOH . E 5 HOH A 298 1098 188 HOH HOH . E 5 HOH A 299 1099 301 HOH HOH . E 5 HOH A 300 1100 32 HOH HOH . E 5 HOH A 301 1101 215 HOH HOH . E 5 HOH A 302 1102 222 HOH HOH . E 5 HOH A 303 1103 267 HOH HOH . E 5 HOH A 304 1104 264 HOH HOH . E 5 HOH A 305 1105 203 HOH HOH . E 5 HOH A 306 1106 247 HOH HOH . E 5 HOH A 307 1107 231 HOH HOH . E 5 HOH A 308 1108 237 HOH HOH . E 5 HOH A 309 1109 200 HOH HOH . E 5 HOH A 310 1110 291 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . B 2 12.273 61.885 25.407 1 56.25 ? S DMS 701 A 1 HETATM 2 O O DMS . . . B 2 12.786 60.709 26.202 1 41.56 ? O DMS 701 A 1 HETATM 3 C C1 DMS . . . B 2 12.144 63.243 26.546 1 47.8 ? C1 DMS 701 A 1 HETATM 4 C C2 DMS . . . B 2 13.652 62.481 24.462 1 48.86 ? C2 DMS 701 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #