data_7P63 # _model_server_result.job_id hxx3o4O8Yrw7-2f9rG8Ghg _model_server_result.datetime_utc '2024-11-04 22:33:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p63 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":701}' # _entry.id 7P63 # _exptl.entry_id 7P63 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 322.439 _entity.id 19 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7P63 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P63 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tridecameric _pdbx_struct_assembly.oligomeric_count 13 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 19 _struct_asym.id W _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 351 F CYS 351 1_555 N FE4 SF4 . F SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc2 A SG CYS 354 F CYS 354 1_555 N FE1 SF4 . F SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc3 A SG CYS 357 F CYS 357 1_555 N FE2 SF4 . F SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc4 A SG CYS 398 F CYS 398 1_555 N FE3 SF4 . F SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc5 B SG CYS 92 E CYS 92 1_555 Q FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc6 B SG CYS 97 E CYS 97 1_555 Q FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc7 B SG CYS 133 E CYS 133 1_555 Q FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc8 B SG CYS 137 E CYS 137 1_555 Q FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc9 C SG CYS 34 G CYS 36 1_555 U FE1 FES . G FES 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc10 C SG CYS 45 G CYS 47 1_555 U FE1 FES . G FES 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc11 C SG CYS 48 G CYS 50 1_555 U FE2 FES . G FES 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc12 C SG CYS 67 G CYS 69 1_555 U FE2 FES . G FES 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc13 C NE2 HIS 99 G HIS 101 1_555 R FE3 SF4 . G SF4 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc14 C SG CYS 103 G CYS 105 1_555 R FE2 SF4 . G SF4 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc15 C SG CYS 106 G CYS 108 1_555 R FE4 SF4 . G SF4 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc16 C SG CYS 112 G CYS 114 1_555 R FE1 SF4 . G SF4 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc17 C SG CYS 151 G CYS 153 1_555 S FE2 SF4 . G SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc18 C SG CYS 154 G CYS 156 1_555 S FE1 SF4 . G SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc19 C SG CYS 157 G CYS 159 1_555 S FE3 SF4 . G SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc20 C SG CYS 201 G CYS 203 1_555 S FE4 SF4 . G SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc21 C SG CYS 228 G CYS 230 1_555 T FE1 SF4 . G SF4 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc22 C SG CYS 231 G CYS 233 1_555 T FE4 SF4 . G SF4 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc23 C SG CYS 235 G CYS 237 1_555 T FE3 SF4 . G SF4 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc24 C SG CYS 263 G CYS 265 1_555 T FE2 SF4 . G SF4 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc25 C OD2 ASP 617 G ASP 619 1_555 V CA CA . G CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc26 C OE1 GLN 632 G GLN 634 1_555 V CA CA . G CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc27 C OE2 GLU 647 G GLU 649 1_555 V CA CA . G CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc28 C OD2 ASP 731 G ASP 733 1_555 V CA CA . G CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc29 E SG CYS 63 B CYS 63 1_555 X FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc30 E SG CYS 64 B CYS 64 1_555 X FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc31 E SG CYS 129 B CYS 129 1_555 X FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc32 E SG CYS 158 B CYS 158 1_555 X FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc33 F SG CYS 60 I CYS 60 1_555 Z FE3 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc34 F SG CYS 63 I CYS 63 1_555 Z FE4 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc35 F SG CYS 66 I CYS 66 1_555 Z FE2 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc36 F SG CYS 70 I CYS 70 1_555 Y FE4 SF4 . I SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc37 F SG CYS 99 I CYS 99 1_555 Y FE2 SF4 . I SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc38 F SG CYS 102 I CYS 102 1_555 Y FE1 SF4 . I SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc39 F SG CYS 105 I CYS 105 1_555 Y FE3 SF4 . I SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc40 F SG CYS 109 I CYS 109 1_555 Z FE1 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? # _chem_comp.formula 'C19 H30 O4' _chem_comp.formula_weight 322.439 _chem_comp.id DCQ _chem_comp.mon_nstd_flag . _chem_comp.name 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms decylubiquinone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C2 DCQ doub 215 n n C2 C3 DCQ sing 216 n n C2 C1 DCQ sing 217 n n C3 O3 DCQ sing 218 n n C3 C4 DCQ doub 219 n n O3 C3M DCQ sing 220 n n C4 O4 DCQ sing 221 n n C4 C5 DCQ sing 222 n n O4 C4M DCQ sing 223 n n C5 O5 DCQ doub 224 n n C5 C6 DCQ sing 225 n n C1 C1M DCQ sing 226 n n C1 C6 DCQ doub 227 n n C6 C7 DCQ sing 228 n n C7 C8 DCQ sing 229 n n C8 C9 DCQ sing 230 n n C9 C10 DCQ sing 231 n n C10 C11 DCQ sing 232 n n C11 C12 DCQ sing 233 n n C12 C13 DCQ sing 234 n n C13 C14 DCQ sing 235 n n C14 C15 DCQ sing 236 n n C15 C16 DCQ sing 237 n n C3M H3M DCQ sing 238 n n C3M H3MA DCQ sing 239 n n C3M H3MB DCQ sing 240 n n C4M H4M DCQ sing 241 n n C4M H4MA DCQ sing 242 n n C4M H4MB DCQ sing 243 n n C1M H1M DCQ sing 244 n n C1M H1MA DCQ sing 245 n n C1M H1MB DCQ sing 246 n n C7 H7 DCQ sing 247 n n C7 H7A DCQ sing 248 n n C8 H8 DCQ sing 249 n n C8 H8A DCQ sing 250 n n C9 H9 DCQ sing 251 n n C9 H9A DCQ sing 252 n n C10 H10 DCQ sing 253 n n C10 H10A DCQ sing 254 n n C11 H11 DCQ sing 255 n n C11 H11A DCQ sing 256 n n C12 H12 DCQ sing 257 n n C12 H12A DCQ sing 258 n n C13 H13 DCQ sing 259 n n C13 H13A DCQ sing 260 n n C14 H14 DCQ sing 261 n n C14 H14A DCQ sing 262 n n C15 H15 DCQ sing 263 n n C15 H15A DCQ sing 264 n n C16 H16 DCQ sing 265 n n C16 H16A DCQ sing 266 n n C16 H16B DCQ sing 267 n n # _atom_sites.entry_id 7P63 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 14 SF4 F 1 501 501 SF4 SF4 . O 15 FMN F 1 502 502 FMN FMN . P 16 NAI F 1 503 503 NAI NAI . Q 17 FES E 1 201 201 FES FES . R 14 SF4 G 1 1001 910 SF4 SF4 . S 14 SF4 G 1 1002 911 SF4 SF4 . T 14 SF4 G 1 1003 912 SF4 SF4 . U 17 FES G 1 1004 913 FES FES . V 18 CA G 1 1005 914 CA CA . W 19 DCQ C 1 701 501 DCQ DCQ . X 14 SF4 B 1 301 231 SF4 SF4 . Y 14 SF4 I 1 201 202 SF4 SF4 . Z 14 SF4 I 1 202 201 SF4 SF4 . AA 20 LFA H 1 601 601 LFA LFA . BA 21 3PE A 1 201 402 3PE 3PE . CA 21 3PE L 1 801 801 3PE 3PE . DA 20 LFA L 1 802 901 LFA LFA . EA 21 3PE L 1 803 1101 3PE 3PE . FA 21 3PE L 1 804 601 3PE 3PE . GA 21 3PE M 1 1001 1001 3PE 3PE . HA 21 3PE M 1 1002 801 3PE 3PE . IA 20 LFA N 1 501 501 LFA LFA . JA 20 LFA N 1 502 601 LFA LFA . KA 21 3PE J 1 201 201 3PE 3PE . LA 21 3PE J 1 202 301 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 DCQ . . . W 19 98.571 104.895 145.07 1 127.2 ? O2 DCQ 701 C 1 HETATM 2 C C2 DCQ . . . W 19 99.102 105.915 144.634 1 135.01 ? C2 DCQ 701 C 1 HETATM 3 C C3 DCQ . . . W 19 99.104 106.199 143.181 1 135.06 ? C3 DCQ 701 C 1 HETATM 4 O O3 DCQ . . . W 19 98.418 105.323 142.394 1 125.55 ? O3 DCQ 701 C 1 HETATM 5 C C3M DCQ . . . W 19 99.09 104.144 141.896 1 117.24 ? C3M DCQ 701 C 1 HETATM 6 C C4 DCQ . . . W 19 99.69 107.312 142.699 1 139.13 ? C4 DCQ 701 C 1 HETATM 7 O O4 DCQ . . . W 19 99.784 107.6 141.371 1 129.45 ? O4 DCQ 701 C 1 HETATM 8 C C4M DCQ . . . W 19 100.96 107.112 140.683 1 118.63 ? C4M DCQ 701 C 1 HETATM 9 C C5 DCQ . . . W 19 100.295 108.302 143.613 1 139.03 ? C5 DCQ 701 C 1 HETATM 10 O O5 DCQ . . . W 19 100.782 109.339 143.165 1 131.74 ? O5 DCQ 701 C 1 HETATM 11 C C1 DCQ . . . W 19 99.743 106.876 145.553 1 134.4 ? C1 DCQ 701 C 1 HETATM 12 C C1M DCQ . . . W 19 99.725 106.519 147.009 1 113.68 ? C1M DCQ 701 C 1 HETATM 13 C C6 DCQ . . . W 19 100.28 108.028 145.062 1 135.16 ? C6 DCQ 701 C 1 HETATM 14 C C7 DCQ . . . W 19 100.881 109.072 145.963 1 120.69 ? C7 DCQ 701 C 1 HETATM 15 C C8 DCQ . . . W 19 102.402 109.163 145.938 1 118.18 ? C8 DCQ 701 C 1 HETATM 16 C C9 DCQ . . . W 19 102.889 110.339 146.776 1 113.55 ? C9 DCQ 701 C 1 HETATM 17 C C10 DCQ . . . W 19 104.378 110.629 146.689 1 98.19 ? C10 DCQ 701 C 1 HETATM 18 C C11 DCQ . . . W 19 105.258 109.532 147.245 1 98.54 ? C11 DCQ 701 C 1 HETATM 19 C C12 DCQ . . . W 19 106.646 109.996 147.655 1 102.9 ? C12 DCQ 701 C 1 HETATM 20 C C13 DCQ . . . W 19 107.424 110.714 146.564 1 104.8 ? C13 DCQ 701 C 1 HETATM 21 C C14 DCQ . . . W 19 107.752 109.851 145.36 1 91.23 ? C14 DCQ 701 C 1 HETATM 22 C C15 DCQ . . . W 19 108.707 110.512 144.384 1 80.26 ? C15 DCQ 701 C 1 HETATM 23 C C16 DCQ . . . W 19 108.204 111.833 143.862 1 67.15 ? C16 DCQ 701 C 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 67 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #