data_7P6S # _model_server_result.job_id LPb7rEZwvqX487GPAvuI6A _model_server_result.datetime_utc '2025-02-17 01:39:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p6s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 7P6S # _exptl.entry_id 7P6S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.148 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description pentane-1,5-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7P6S _cell.length_a 33.48 _cell.length_b 59.5 _cell.length_c 87.04 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P6S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 A CYS 48 1_555 A SG CYS 31 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 35 A CYS 63 1_555 A SG CYS 129 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 57 A CYS 85 1_555 A SG CYS 144 A CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf4 A SG CYS 79 A CYS 107 1_555 A SG CYS 117 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 A SG CYS 85 A CYS 113 1_555 A SG CYS 149 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 A SG CYS 110 A CYS 138 1_555 A SG CYS 118 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 37 A ASN 65 1_555 B C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 94 A ASN 122 1_555 C C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C5 H12 O2' _chem_comp.formula_weight 104.148 _chem_comp.id 9JE _chem_comp.mon_nstd_flag . _chem_comp.name pentane-1,5-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 9JE sing 1 n n C02 C03 9JE sing 2 n n C03 C04 9JE sing 3 n n C04 C05 9JE sing 4 n n C05 C06 9JE sing 5 n n O07 C06 9JE sing 6 n n C02 H1 9JE sing 7 n n C02 H2 9JE sing 8 n n C03 H3 9JE sing 9 n n C03 H4 9JE sing 10 n n C04 H5 9JE sing 11 n n C04 H6 9JE sing 12 n n C05 H7 9JE sing 13 n n C05 H8 9JE sing 14 n n C06 H9 9JE sing 15 n n C06 H10 9JE sing 16 n n O01 H11 9JE sing 17 n n O07 H12 9JE sing 18 n n # _atom_sites.entry_id 7P6S _atom_sites.fract_transf_matrix[1][1] 0.029869 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 201 910 NAG NAG . C 2 NAG A 1 202 930 NAG NAG . D 3 9JE A 1 203 931 9JE 9JE . E 4 HOH A 1 301 91 HOH HOH . E 4 HOH A 2 302 33 HOH HOH . E 4 HOH A 3 303 175 HOH HOH . E 4 HOH A 4 304 103 HOH HOH . E 4 HOH A 5 305 152 HOH HOH . E 4 HOH A 6 306 113 HOH HOH . E 4 HOH A 7 307 192 HOH HOH . E 4 HOH A 8 308 50 HOH HOH . E 4 HOH A 9 309 131 HOH HOH . E 4 HOH A 10 310 230 HOH HOH . E 4 HOH A 11 311 58 HOH HOH . E 4 HOH A 12 312 64 HOH HOH . E 4 HOH A 13 313 218 HOH HOH . E 4 HOH A 14 314 208 HOH HOH . E 4 HOH A 15 315 157 HOH HOH . E 4 HOH A 16 316 81 HOH HOH . E 4 HOH A 17 317 86 HOH HOH . E 4 HOH A 18 318 104 HOH HOH . E 4 HOH A 19 319 216 HOH HOH . E 4 HOH A 20 320 125 HOH HOH . E 4 HOH A 21 321 69 HOH HOH . E 4 HOH A 22 322 151 HOH HOH . E 4 HOH A 23 323 63 HOH HOH . E 4 HOH A 24 324 156 HOH HOH . E 4 HOH A 25 325 76 HOH HOH . E 4 HOH A 26 326 111 HOH HOH . E 4 HOH A 27 327 4 HOH HOH . E 4 HOH A 28 328 173 HOH HOH . E 4 HOH A 29 329 27 HOH HOH . E 4 HOH A 30 330 56 HOH HOH . E 4 HOH A 31 331 109 HOH HOH . E 4 HOH A 32 332 145 HOH HOH . E 4 HOH A 33 333 153 HOH HOH . E 4 HOH A 34 334 51 HOH HOH . E 4 HOH A 35 335 132 HOH HOH . E 4 HOH A 36 336 147 HOH HOH . E 4 HOH A 37 337 118 HOH HOH . E 4 HOH A 38 338 206 HOH HOH . E 4 HOH A 39 339 31 HOH HOH . E 4 HOH A 40 340 13 HOH HOH . E 4 HOH A 41 341 165 HOH HOH . E 4 HOH A 42 342 178 HOH HOH . E 4 HOH A 43 343 40 HOH HOH . E 4 HOH A 44 344 1 HOH HOH . E 4 HOH A 45 345 203 HOH HOH . E 4 HOH A 46 346 80 HOH HOH . E 4 HOH A 47 347 45 HOH HOH . E 4 HOH A 48 348 32 HOH HOH . E 4 HOH A 49 349 57 HOH HOH . E 4 HOH A 50 350 9 HOH HOH . E 4 HOH A 51 351 66 HOH HOH . E 4 HOH A 52 352 202 HOH HOH . E 4 HOH A 53 353 88 HOH HOH . E 4 HOH A 54 354 54 HOH HOH . E 4 HOH A 55 355 16 HOH HOH . E 4 HOH A 56 356 167 HOH HOH . E 4 HOH A 57 357 169 HOH HOH . E 4 HOH A 58 358 179 HOH HOH . E 4 HOH A 59 359 7 HOH HOH . E 4 HOH A 60 360 78 HOH HOH . E 4 HOH A 61 361 117 HOH HOH . E 4 HOH A 62 362 126 HOH HOH . E 4 HOH A 63 363 214 HOH HOH . E 4 HOH A 64 364 19 HOH HOH . E 4 HOH A 65 365 101 HOH HOH . E 4 HOH A 66 366 146 HOH HOH . E 4 HOH A 67 367 231 HOH HOH . E 4 HOH A 68 368 20 HOH HOH . E 4 HOH A 69 369 121 HOH HOH . E 4 HOH A 70 370 46 HOH HOH . E 4 HOH A 71 371 210 HOH HOH . E 4 HOH A 72 372 39 HOH HOH . E 4 HOH A 73 373 82 HOH HOH . E 4 HOH A 74 374 5 HOH HOH . E 4 HOH A 75 375 2 HOH HOH . E 4 HOH A 76 376 162 HOH HOH . E 4 HOH A 77 377 22 HOH HOH . E 4 HOH A 78 378 26 HOH HOH . E 4 HOH A 79 379 119 HOH HOH . E 4 HOH A 80 380 52 HOH HOH . E 4 HOH A 81 381 41 HOH HOH . E 4 HOH A 82 382 84 HOH HOH . E 4 HOH A 83 383 148 HOH HOH . E 4 HOH A 84 384 207 HOH HOH . E 4 HOH A 85 385 55 HOH HOH . E 4 HOH A 86 386 62 HOH HOH . E 4 HOH A 87 387 60 HOH HOH . E 4 HOH A 88 388 21 HOH HOH . E 4 HOH A 89 389 29 HOH HOH . E 4 HOH A 90 390 85 HOH HOH . E 4 HOH A 91 391 143 HOH HOH . E 4 HOH A 92 392 47 HOH HOH . E 4 HOH A 93 393 3 HOH HOH . E 4 HOH A 94 394 198 HOH HOH . E 4 HOH A 95 395 65 HOH HOH . E 4 HOH A 96 396 17 HOH HOH . E 4 HOH A 97 397 10 HOH HOH . E 4 HOH A 98 398 43 HOH HOH . E 4 HOH A 99 399 44 HOH HOH . E 4 HOH A 100 400 211 HOH HOH . E 4 HOH A 101 401 71 HOH HOH . E 4 HOH A 102 402 11 HOH HOH . E 4 HOH A 103 403 87 HOH HOH . E 4 HOH A 104 404 25 HOH HOH . E 4 HOH A 105 405 95 HOH HOH . E 4 HOH A 106 406 93 HOH HOH . E 4 HOH A 107 407 77 HOH HOH . E 4 HOH A 108 408 24 HOH HOH . E 4 HOH A 109 409 97 HOH HOH . E 4 HOH A 110 410 99 HOH HOH . E 4 HOH A 111 411 189 HOH HOH . E 4 HOH A 112 412 124 HOH HOH . E 4 HOH A 113 413 190 HOH HOH . E 4 HOH A 114 414 49 HOH HOH . E 4 HOH A 115 415 127 HOH HOH . E 4 HOH A 116 416 23 HOH HOH . E 4 HOH A 117 417 232 HOH HOH . E 4 HOH A 118 418 6 HOH HOH . E 4 HOH A 119 419 100 HOH HOH . E 4 HOH A 120 420 48 HOH HOH . E 4 HOH A 121 421 36 HOH HOH . E 4 HOH A 122 422 59 HOH HOH . E 4 HOH A 123 423 8 HOH HOH . E 4 HOH A 124 424 130 HOH HOH . E 4 HOH A 125 425 70 HOH HOH . E 4 HOH A 126 426 15 HOH HOH . E 4 HOH A 127 427 161 HOH HOH . E 4 HOH A 128 428 96 HOH HOH . E 4 HOH A 129 429 155 HOH HOH . E 4 HOH A 130 430 34 HOH HOH . E 4 HOH A 131 431 53 HOH HOH . E 4 HOH A 132 432 194 HOH HOH . E 4 HOH A 133 433 116 HOH HOH . E 4 HOH A 134 434 105 HOH HOH . E 4 HOH A 135 435 67 HOH HOH . E 4 HOH A 136 436 94 HOH HOH . E 4 HOH A 137 437 120 HOH HOH . E 4 HOH A 138 438 196 HOH HOH . E 4 HOH A 139 439 12 HOH HOH . E 4 HOH A 140 440 205 HOH HOH . E 4 HOH A 141 441 14 HOH HOH . E 4 HOH A 142 442 115 HOH HOH . E 4 HOH A 143 443 30 HOH HOH . E 4 HOH A 144 444 197 HOH HOH . E 4 HOH A 145 445 224 HOH HOH . E 4 HOH A 146 446 18 HOH HOH . E 4 HOH A 147 447 35 HOH HOH . E 4 HOH A 148 448 200 HOH HOH . E 4 HOH A 149 449 122 HOH HOH . E 4 HOH A 150 450 168 HOH HOH . E 4 HOH A 151 451 92 HOH HOH . E 4 HOH A 152 452 164 HOH HOH . E 4 HOH A 153 453 140 HOH HOH . E 4 HOH A 154 454 89 HOH HOH . E 4 HOH A 155 455 106 HOH HOH . E 4 HOH A 156 456 159 HOH HOH . E 4 HOH A 157 457 73 HOH HOH . E 4 HOH A 158 458 133 HOH HOH . E 4 HOH A 159 459 37 HOH HOH . E 4 HOH A 160 460 138 HOH HOH . E 4 HOH A 161 461 28 HOH HOH . E 4 HOH A 162 462 110 HOH HOH . E 4 HOH A 163 463 183 HOH HOH . E 4 HOH A 164 464 160 HOH HOH . E 4 HOH A 165 465 72 HOH HOH . E 4 HOH A 166 466 38 HOH HOH . E 4 HOH A 167 467 75 HOH HOH . E 4 HOH A 168 468 170 HOH HOH . E 4 HOH A 169 469 220 HOH HOH . E 4 HOH A 170 470 176 HOH HOH . E 4 HOH A 171 471 227 HOH HOH . E 4 HOH A 172 472 199 HOH HOH . E 4 HOH A 173 473 42 HOH HOH . E 4 HOH A 174 474 83 HOH HOH . E 4 HOH A 175 475 129 HOH HOH . E 4 HOH A 176 476 213 HOH HOH . E 4 HOH A 177 477 188 HOH HOH . E 4 HOH A 178 478 144 HOH HOH . E 4 HOH A 179 479 171 HOH HOH . E 4 HOH A 180 480 180 HOH HOH . E 4 HOH A 181 481 150 HOH HOH . E 4 HOH A 182 482 217 HOH HOH . E 4 HOH A 183 483 223 HOH HOH . E 4 HOH A 184 484 204 HOH HOH . E 4 HOH A 185 485 174 HOH HOH . E 4 HOH A 186 486 61 HOH HOH . E 4 HOH A 187 487 187 HOH HOH . E 4 HOH A 188 488 107 HOH HOH . E 4 HOH A 189 489 137 HOH HOH . E 4 HOH A 190 490 184 HOH HOH . E 4 HOH A 191 491 215 HOH HOH . E 4 HOH A 192 492 114 HOH HOH . E 4 HOH A 193 493 229 HOH HOH . E 4 HOH A 194 494 195 HOH HOH . E 4 HOH A 195 495 201 HOH HOH . E 4 HOH A 196 496 135 HOH HOH . E 4 HOH A 197 497 225 HOH HOH . E 4 HOH A 198 498 149 HOH HOH . E 4 HOH A 199 499 172 HOH HOH . E 4 HOH A 200 500 134 HOH HOH . E 4 HOH A 201 501 186 HOH HOH . E 4 HOH A 202 502 166 HOH HOH . E 4 HOH A 203 503 182 HOH HOH . E 4 HOH A 204 504 212 HOH HOH . E 4 HOH A 205 505 108 HOH HOH . E 4 HOH A 206 506 141 HOH HOH . E 4 HOH A 207 507 123 HOH HOH . E 4 HOH A 208 508 191 HOH HOH . E 4 HOH A 209 509 209 HOH HOH . E 4 HOH A 210 510 68 HOH HOH . E 4 HOH A 211 511 185 HOH HOH . E 4 HOH A 212 512 181 HOH HOH . E 4 HOH A 213 513 98 HOH HOH . E 4 HOH A 214 514 226 HOH HOH . E 4 HOH A 215 515 228 HOH HOH . E 4 HOH A 216 516 163 HOH HOH . E 4 HOH A 217 517 102 HOH HOH . E 4 HOH A 218 518 79 HOH HOH . E 4 HOH A 219 519 219 HOH HOH . E 4 HOH A 220 520 128 HOH HOH . E 4 HOH A 221 521 74 HOH HOH . E 4 HOH A 222 522 139 HOH HOH . E 4 HOH A 223 523 112 HOH HOH . E 4 HOH A 224 524 177 HOH HOH . E 4 HOH A 225 525 154 HOH HOH . E 4 HOH A 226 526 90 HOH HOH . E 4 HOH A 227 527 136 HOH HOH . E 4 HOH A 228 528 222 HOH HOH . E 4 HOH A 229 529 158 HOH HOH . E 4 HOH A 230 530 193 HOH HOH . E 4 HOH A 231 531 221 HOH HOH . E 4 HOH A 232 532 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 9JE . . . D 3 9.956 17.776 -7.325 0.87 20.39 ? C02 9JE 203 A 1 HETATM 2 C C03 9JE . . . D 3 11.399 17.746 -7.763 0.87 19.19 ? C03 9JE 203 A 1 HETATM 3 C C04 9JE . . . D 3 12.282 16.905 -6.875 0.87 16.18 ? C04 9JE 203 A 1 HETATM 4 C C05 9JE . . . D 3 12.509 17.513 -5.512 0.87 17.05 ? C05 9JE 203 A 1 HETATM 5 C C06 9JE . . . D 3 13.57 16.809 -4.705 0.87 15.02 ? C06 9JE 203 A 1 HETATM 6 O O01 9JE . . . D 3 9.319 16.54 -7.618 0.87 15.96 ? O01 9JE 203 A 1 HETATM 7 O O07 9JE . . . D 3 13.877 17.528 -3.522 0.87 14.13 ? O07 9JE 203 A 1 HETATM 8 H H1 9JE . . . D 3 9.488 18.503 -7.789 0.87 24.47 ? H1 9JE 203 A 1 HETATM 9 H H2 9JE . . . D 3 9.909 17.948 -6.361 0.87 24.47 ? H2 9JE 203 A 1 HETATM 10 H H3 9JE . . . D 3 11.743 18.664 -7.775 0.87 23.02 ? H3 9JE 203 A 1 HETATM 11 H H4 9JE . . . D 3 11.443 17.397 -8.678 0.87 23.02 ? H4 9JE 203 A 1 HETATM 12 H H5 9JE . . . D 3 13.149 16.778 -7.316 0.87 19.41 ? H5 9JE 203 A 1 HETATM 13 H H6 9JE . . . D 3 11.872 16.02 -6.765 0.87 19.41 ? H6 9JE 203 A 1 HETATM 14 H H7 9JE . . . D 3 11.667 17.492 -5.011 0.87 20.46 ? H7 9JE 203 A 1 HETATM 15 H H8 9JE . . . D 3 12.769 18.451 -5.622 0.87 20.46 ? H8 9JE 203 A 1 HETATM 16 H H9 9JE . . . D 3 13.255 15.91 -4.467 0.87 18.03 ? H9 9JE 203 A 1 HETATM 17 H H10 9JE . . . D 3 14.382 16.714 -5.247 0.87 18.03 ? H10 9JE 203 A 1 HETATM 18 H H11 9JE . . . D 3 9.863 15.912 -7.458 0.87 19.15 ? H11 9JE 203 A 1 HETATM 19 H H12 9JE . . . D 3 14.671 17.347 -3.295 0.87 16.95 ? H12 9JE 203 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 533 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 19 #