data_7P6T # _model_server_result.job_id -BEiMHXBK82k49yE7HTrgw _model_server_result.datetime_utc '2025-01-12 23:41:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p6t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7P6T # _exptl.entry_id 7P6T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.839 _cell.angle_gamma 90 _cell.entry_id 7P6T _cell.length_a 90.15 _cell.length_b 33.66 _cell.length_c 59.63 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P6T _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 A CYS 48 1_555 A SG CYS 31 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 35 A CYS 63 1_555 A SG CYS 129 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 A SG CYS 57 A CYS 85 1_555 A SG CYS 144 A CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf4 A SG CYS 79 A CYS 107 1_555 A SG CYS 117 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 A SG CYS 85 A CYS 113 1_555 A SG CYS 149 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 110 A CYS 138 1_555 A SG CYS 118 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? covale ? covale1 A ND2 ASN 37 A ASN 65 1_555 B C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 A ND2 ASN 94 A ASN 122 1_555 C C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 A ND2 ASN 106 A ASN 134 1_555 D C1 NAG . A NAG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 259 n n C1 O1 NAG sing 260 n n C1 O5 NAG sing 261 n n C1 H1 NAG sing 262 n n C2 C3 NAG sing 263 n n C2 N2 NAG sing 264 n n C2 H2 NAG sing 265 n n C3 C4 NAG sing 266 n n C3 O3 NAG sing 267 n n C3 H3 NAG sing 268 n n C4 C5 NAG sing 269 n n C4 O4 NAG sing 270 n n C4 H4 NAG sing 271 n n C5 C6 NAG sing 272 n n C5 O5 NAG sing 273 n n C5 H5 NAG sing 274 n n C6 O6 NAG sing 275 n n C6 H61 NAG sing 276 n n C6 H62 NAG sing 277 n n C7 C8 NAG sing 278 n n C7 N2 NAG sing 279 n n C7 O7 NAG doub 280 n n C8 H81 NAG sing 281 n n C8 H82 NAG sing 282 n n C8 H83 NAG sing 283 n n N2 HN2 NAG sing 284 n n O1 HO1 NAG sing 285 n n O3 HO3 NAG sing 286 n n O4 HO4 NAG sing 287 n n O6 HO6 NAG sing 288 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7P6T _atom_sites.fract_transf_matrix[1][1] 0.011093 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004445 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 201 910 NAG NAG . C 2 NAG A 1 202 930 NAG NAG . D 2 NAG A 1 203 940 NAG NAG . E 3 9D2 A 1 204 1000 9D2 9D2 . F 3 9D2 A 1 205 1001 9D2 9D2 . G 3 9D2 A 1 206 1002 9D2 9D2 . H 3 9D2 A 1 207 1003 9D2 9D2 . I 3 9D2 A 1 208 1004 9D2 9D2 . J 4 HOH A 1 301 80 HOH HOH . J 4 HOH A 2 302 88 HOH HOH . J 4 HOH A 3 303 90 HOH HOH . J 4 HOH A 4 304 77 HOH HOH . J 4 HOH A 5 305 110 HOH HOH . J 4 HOH A 6 306 75 HOH HOH . J 4 HOH A 7 307 71 HOH HOH . J 4 HOH A 8 308 9 HOH HOH . J 4 HOH A 9 309 78 HOH HOH . J 4 HOH A 10 310 25 HOH HOH . J 4 HOH A 11 311 107 HOH HOH . J 4 HOH A 12 312 53 HOH HOH . J 4 HOH A 13 313 118 HOH HOH . J 4 HOH A 14 314 28 HOH HOH . J 4 HOH A 15 315 109 HOH HOH . J 4 HOH A 16 316 38 HOH HOH . J 4 HOH A 17 317 103 HOH HOH . J 4 HOH A 18 318 24 HOH HOH . J 4 HOH A 19 319 73 HOH HOH . J 4 HOH A 20 320 69 HOH HOH . J 4 HOH A 21 321 22 HOH HOH . J 4 HOH A 22 322 59 HOH HOH . J 4 HOH A 23 323 74 HOH HOH . J 4 HOH A 24 324 108 HOH HOH . J 4 HOH A 25 325 30 HOH HOH . J 4 HOH A 26 326 43 HOH HOH . J 4 HOH A 27 327 29 HOH HOH . J 4 HOH A 28 328 55 HOH HOH . J 4 HOH A 29 329 19 HOH HOH . J 4 HOH A 30 330 81 HOH HOH . J 4 HOH A 31 331 63 HOH HOH . J 4 HOH A 32 332 52 HOH HOH . J 4 HOH A 33 333 31 HOH HOH . J 4 HOH A 34 334 56 HOH HOH . J 4 HOH A 35 335 8 HOH HOH . J 4 HOH A 36 336 15 HOH HOH . J 4 HOH A 37 337 18 HOH HOH . J 4 HOH A 38 338 7 HOH HOH . J 4 HOH A 39 339 34 HOH HOH . J 4 HOH A 40 340 87 HOH HOH . J 4 HOH A 41 341 1 HOH HOH . J 4 HOH A 42 342 119 HOH HOH . J 4 HOH A 43 343 124 HOH HOH . J 4 HOH A 44 344 96 HOH HOH . J 4 HOH A 45 345 99 HOH HOH . J 4 HOH A 46 346 46 HOH HOH . J 4 HOH A 47 347 40 HOH HOH . J 4 HOH A 48 348 93 HOH HOH . J 4 HOH A 49 349 11 HOH HOH . J 4 HOH A 50 350 111 HOH HOH . J 4 HOH A 51 351 2 HOH HOH . J 4 HOH A 52 352 48 HOH HOH . J 4 HOH A 53 353 32 HOH HOH . J 4 HOH A 54 354 3 HOH HOH . J 4 HOH A 55 355 20 HOH HOH . J 4 HOH A 56 356 106 HOH HOH . J 4 HOH A 57 357 101 HOH HOH . J 4 HOH A 58 358 27 HOH HOH . J 4 HOH A 59 359 60 HOH HOH . J 4 HOH A 60 360 47 HOH HOH . J 4 HOH A 61 361 116 HOH HOH . J 4 HOH A 62 362 64 HOH HOH . J 4 HOH A 63 363 105 HOH HOH . J 4 HOH A 64 364 44 HOH HOH . J 4 HOH A 65 365 17 HOH HOH . J 4 HOH A 66 366 5 HOH HOH . J 4 HOH A 67 367 86 HOH HOH . J 4 HOH A 68 368 112 HOH HOH . J 4 HOH A 69 369 23 HOH HOH . J 4 HOH A 70 370 61 HOH HOH . J 4 HOH A 71 371 37 HOH HOH . J 4 HOH A 72 372 57 HOH HOH . J 4 HOH A 73 373 129 HOH HOH . J 4 HOH A 74 374 4 HOH HOH . J 4 HOH A 75 375 35 HOH HOH . J 4 HOH A 76 376 58 HOH HOH . J 4 HOH A 77 377 51 HOH HOH . J 4 HOH A 78 378 62 HOH HOH . J 4 HOH A 79 379 66 HOH HOH . J 4 HOH A 80 380 84 HOH HOH . J 4 HOH A 81 381 10 HOH HOH . J 4 HOH A 82 382 13 HOH HOH . J 4 HOH A 83 383 95 HOH HOH . J 4 HOH A 84 384 49 HOH HOH . J 4 HOH A 85 385 89 HOH HOH . J 4 HOH A 86 386 72 HOH HOH . J 4 HOH A 87 387 36 HOH HOH . J 4 HOH A 88 388 54 HOH HOH . J 4 HOH A 89 389 76 HOH HOH . J 4 HOH A 90 390 132 HOH HOH . J 4 HOH A 91 391 12 HOH HOH . J 4 HOH A 92 392 21 HOH HOH . J 4 HOH A 93 393 83 HOH HOH . J 4 HOH A 94 394 6 HOH HOH . J 4 HOH A 95 395 92 HOH HOH . J 4 HOH A 96 396 16 HOH HOH . J 4 HOH A 97 397 26 HOH HOH . J 4 HOH A 98 398 79 HOH HOH . J 4 HOH A 99 399 104 HOH HOH . J 4 HOH A 100 400 94 HOH HOH . J 4 HOH A 101 401 41 HOH HOH . J 4 HOH A 102 402 39 HOH HOH . J 4 HOH A 103 403 42 HOH HOH . J 4 HOH A 104 404 122 HOH HOH . J 4 HOH A 105 405 97 HOH HOH . J 4 HOH A 106 406 33 HOH HOH . J 4 HOH A 107 407 113 HOH HOH . J 4 HOH A 108 408 98 HOH HOH . J 4 HOH A 109 409 91 HOH HOH . J 4 HOH A 110 410 65 HOH HOH . J 4 HOH A 111 411 128 HOH HOH . J 4 HOH A 112 412 100 HOH HOH . J 4 HOH A 113 413 134 HOH HOH . J 4 HOH A 114 414 68 HOH HOH . J 4 HOH A 115 415 127 HOH HOH . J 4 HOH A 116 416 114 HOH HOH . J 4 HOH A 117 417 133 HOH HOH . J 4 HOH A 118 418 14 HOH HOH . J 4 HOH A 119 419 131 HOH HOH . J 4 HOH A 120 420 85 HOH HOH . J 4 HOH A 121 421 121 HOH HOH . J 4 HOH A 122 422 117 HOH HOH . J 4 HOH A 123 423 82 HOH HOH . J 4 HOH A 124 424 123 HOH HOH . J 4 HOH A 125 425 50 HOH HOH . J 4 HOH A 126 426 130 HOH HOH . J 4 HOH A 127 427 125 HOH HOH . J 4 HOH A 128 428 126 HOH HOH . J 4 HOH A 129 429 120 HOH HOH . J 4 HOH A 130 430 67 HOH HOH . J 4 HOH A 131 431 70 HOH HOH . J 4 HOH A 132 432 45 HOH HOH . J 4 HOH A 133 433 102 HOH HOH . J 4 HOH A 134 434 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 19.74 -2.538 25.269 1 35.16 ? C1 NAG 201 A 1 HETATM 2 C C2 NAG . . . B 2 20.748 -1.809 26.172 1 35.44 ? C2 NAG 201 A 1 HETATM 3 C C3 NAG . . . B 2 21.505 -0.731 25.386 1 57.1 ? C3 NAG 201 A 1 HETATM 4 C C4 NAG . . . B 2 22.073 -1.294 24.091 1 53.91 ? C4 NAG 201 A 1 HETATM 5 C C5 NAG . . . B 2 20.956 -1.955 23.299 1 56.14 ? C5 NAG 201 A 1 HETATM 6 C C6 NAG . . . B 2 21.422 -2.584 22.005 1 45.19 ? C6 NAG 201 A 1 HETATM 7 C C7 NAG . . . B 2 20.15 -1.704 28.559 1 40.25 ? C7 NAG 201 A 1 HETATM 8 C C8 NAG . . . B 2 19.384 -0.955 29.604 1 39.07 ? C8 NAG 201 A 1 HETATM 9 N N2 NAG . . . B 2 20.073 -1.216 27.316 1 37.8 ? N2 NAG 201 A 1 HETATM 10 O O3 NAG . . . B 2 22.559 -0.216 26.193 1 57.32 ? O3 NAG 201 A 1 HETATM 11 O O4 NAG . . . B 2 22.653 -0.255 23.31 1 70.13 ? O4 NAG 201 A 1 HETATM 12 O O5 NAG . . . B 2 20.39 -3.003 24.094 1 41.17 ? O5 NAG 201 A 1 HETATM 13 O O6 NAG . . . B 2 22.258 -3.709 22.24 1 53.79 ? O6 NAG 201 A 1 HETATM 14 O O7 NAG . . . B 2 20.806 -2.704 28.827 1 46.54 ? O7 NAG 201 A 1 HETATM 15 H H2 NAG . . . B 2 21.402 -2.462 26.484 1 42.53 ? H2 NAG 201 A 1 HETATM 16 H H3 NAG . . . B 2 20.883 -0.012 25.166 1 68.52 ? H3 NAG 201 A 1 HETATM 17 H H4 NAG . . . B 2 22.765 -1.95 24.297 1 64.69 ? H4 NAG 201 A 1 HETATM 18 H H5 NAG . . . B 2 20.271 -1.293 23.086 1 67.37 ? H5 NAG 201 A 1 HETATM 19 H H61 NAG . . . B 2 21.919 -1.92 21.49 1 54.23 ? H61 NAG 201 A 1 HETATM 20 H H62 NAG . . . B 2 20.643 -2.869 21.492 1 54.23 ? H62 NAG 201 A 1 HETATM 21 H H81 NAG . . . B 2 19.513 -1.383 30.472 1 46.89 ? H81 NAG 201 A 1 HETATM 22 H H82 NAG . . . B 2 18.434 -0.959 29.377 1 46.89 ? H82 NAG 201 A 1 HETATM 23 H H83 NAG . . . B 2 19.704 -0.034 29.645 1 46.89 ? H83 NAG 201 A 1 HETATM 24 H HN2 NAG . . . B 2 19.568 -0.469 27.177 1 45.36 ? HN2 NAG 201 A 1 HETATM 25 H HO3 NAG . . . B 2 23.211 0.086 25.671 1 68.79 ? HO3 NAG 201 A 1 HETATM 26 H HO4 NAG . . . B 2 23.169 -0.611 22.682 1 84.16 ? HO4 NAG 201 A 1 HETATM 27 H HO6 NAG . . . B 2 22.173 -3.969 23.084 1 64.55 ? HO6 NAG 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #