data_7P7H # _model_server_result.job_id NfQ7Evg_W7mJqkna-IYQYA _model_server_result.datetime_utc '2025-01-11 05:02:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p7h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 7P7H # _exptl.entry_id 7P7H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.64 _cell.angle_gamma 90 _cell.entry_id 7P7H _cell.length_a 49.029 _cell.length_b 73.377 _cell.length_c 90.608 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P7H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 7P7H _atom_sites.fract_transf_matrix[1][1] 0.020396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004948 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 301 1 AMP AMP . D 2 AMP B 1 301 2 AMP AMP . E 3 HOH A 1 401 39 HOH HOH . E 3 HOH A 2 402 80 HOH HOH . E 3 HOH A 3 403 81 HOH HOH . E 3 HOH A 4 404 66 HOH HOH . E 3 HOH A 5 405 28 HOH HOH . E 3 HOH A 6 406 91 HOH HOH . E 3 HOH A 7 407 40 HOH HOH . E 3 HOH A 8 408 98 HOH HOH . E 3 HOH A 9 409 12 HOH HOH . E 3 HOH A 10 410 96 HOH HOH . E 3 HOH A 11 411 53 HOH HOH . E 3 HOH A 12 412 61 HOH HOH . E 3 HOH A 13 413 19 HOH HOH . E 3 HOH A 14 414 4 HOH HOH . E 3 HOH A 15 415 71 HOH HOH . E 3 HOH A 16 416 45 HOH HOH . E 3 HOH A 17 417 69 HOH HOH . E 3 HOH A 18 418 93 HOH HOH . E 3 HOH A 19 419 18 HOH HOH . E 3 HOH A 20 420 6 HOH HOH . E 3 HOH A 21 421 51 HOH HOH . E 3 HOH A 22 422 94 HOH HOH . E 3 HOH A 23 423 84 HOH HOH . E 3 HOH A 24 424 56 HOH HOH . E 3 HOH A 25 425 82 HOH HOH . E 3 HOH A 26 426 92 HOH HOH . E 3 HOH A 27 427 97 HOH HOH . E 3 HOH A 28 428 49 HOH HOH . E 3 HOH A 29 429 60 HOH HOH . E 3 HOH A 30 430 7 HOH HOH . E 3 HOH A 31 431 29 HOH HOH . E 3 HOH A 32 432 52 HOH HOH . E 3 HOH A 33 433 86 HOH HOH . E 3 HOH A 34 434 89 HOH HOH . E 3 HOH A 35 435 37 HOH HOH . E 3 HOH A 36 436 46 HOH HOH . E 3 HOH A 37 437 55 HOH HOH . E 3 HOH A 38 438 27 HOH HOH . E 3 HOH A 39 439 95 HOH HOH . E 3 HOH A 40 440 15 HOH HOH . E 3 HOH A 41 441 87 HOH HOH . E 3 HOH A 42 442 70 HOH HOH . E 3 HOH A 43 443 76 HOH HOH . E 3 HOH A 44 444 85 HOH HOH . E 3 HOH A 45 445 34 HOH HOH . E 3 HOH A 46 446 77 HOH HOH . E 3 HOH A 47 447 59 HOH HOH . E 3 HOH A 48 448 25 HOH HOH . E 3 HOH A 49 449 88 HOH HOH . E 3 HOH A 50 450 22 HOH HOH . E 3 HOH A 51 451 90 HOH HOH . E 3 HOH A 52 452 75 HOH HOH . E 3 HOH A 53 453 114 HOH HOH . E 3 HOH A 54 454 78 HOH HOH . F 3 HOH B 1 401 113 HOH HOH . F 3 HOH B 2 402 105 HOH HOH . F 3 HOH B 3 403 41 HOH HOH . F 3 HOH B 4 404 112 HOH HOH . F 3 HOH B 5 405 111 HOH HOH . F 3 HOH B 6 406 32 HOH HOH . F 3 HOH B 7 407 42 HOH HOH . F 3 HOH B 8 408 100 HOH HOH . F 3 HOH B 9 409 108 HOH HOH . F 3 HOH B 10 410 63 HOH HOH . F 3 HOH B 11 411 2 HOH HOH . F 3 HOH B 12 412 65 HOH HOH . F 3 HOH B 13 413 73 HOH HOH . F 3 HOH B 14 414 30 HOH HOH . F 3 HOH B 15 415 13 HOH HOH . F 3 HOH B 16 416 62 HOH HOH . F 3 HOH B 17 417 21 HOH HOH . F 3 HOH B 18 418 43 HOH HOH . F 3 HOH B 19 419 20 HOH HOH . F 3 HOH B 20 420 67 HOH HOH . F 3 HOH B 21 421 24 HOH HOH . F 3 HOH B 22 422 44 HOH HOH . F 3 HOH B 23 423 23 HOH HOH . F 3 HOH B 24 424 104 HOH HOH . F 3 HOH B 25 425 26 HOH HOH . F 3 HOH B 26 426 68 HOH HOH . F 3 HOH B 27 427 38 HOH HOH . F 3 HOH B 28 428 101 HOH HOH . F 3 HOH B 29 429 1 HOH HOH . F 3 HOH B 30 430 50 HOH HOH . F 3 HOH B 31 431 102 HOH HOH . F 3 HOH B 32 432 14 HOH HOH . F 3 HOH B 33 433 107 HOH HOH . F 3 HOH B 34 434 110 HOH HOH . F 3 HOH B 35 435 109 HOH HOH . F 3 HOH B 36 436 3 HOH HOH . F 3 HOH B 37 437 106 HOH HOH . F 3 HOH B 38 438 99 HOH HOH . F 3 HOH B 39 439 17 HOH HOH . F 3 HOH B 40 440 36 HOH HOH . F 3 HOH B 41 441 9 HOH HOH . F 3 HOH B 42 442 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . D 2 -2.86 21.121 65.539 1 76.64 ? P AMP 301 B 1 HETATM 2 O O1P AMP . . . D 2 -1.727 21.254 64.529 1 68.96 ? O1P AMP 301 B 1 HETATM 3 O O2P AMP . . . D 2 -3.166 19.663 65.911 1 73.78 ? O2P AMP 301 B 1 HETATM 4 O O3P AMP . . . D 2 -4.107 21.894 65.139 1 74.87 ? O3P AMP 301 B 1 HETATM 5 O O5' AMP . . . D 2 -2.308 21.84 66.896 1 76.58 ? O5' AMP 301 B 1 HETATM 6 C C5' AMP . . . D 2 -1.786 23.205 66.833 1 69.46 ? C5' AMP 301 B 1 HETATM 7 C C4' AMP . . . D 2 -0.582 23.341 67.741 1 64.99 ? C4' AMP 301 B 1 HETATM 8 O O4' AMP . . . D 2 -0.918 22.872 69.075 1 65.08 ? O4' AMP 301 B 1 HETATM 9 C C3' AMP . . . D 2 0.654 22.53 67.342 1 65.91 ? C3' AMP 301 B 1 HETATM 10 O O3' AMP . . . D 2 1.477 23.248 66.429 1 66.79 ? O3' AMP 301 B 1 HETATM 11 C C2' AMP . . . D 2 1.349 22.313 68.691 1 63.19 ? C2' AMP 301 B 1 HETATM 12 O O2' AMP . . . D 2 2.146 23.411 69.07 1 67.46 ? O2' AMP 301 B 1 HETATM 13 C C1' AMP . . . D 2 0.166 22.165 69.647 1 59.27 ? C1' AMP 301 B 1 HETATM 14 N N9 AMP . . . D 2 -0.245 20.78 69.887 1 57.96 ? N9 AMP 301 B 1 HETATM 15 C C8 AMP . . . D 2 -1.246 20.092 69.243 1 59.07 ? C8 AMP 301 B 1 HETATM 16 N N7 AMP . . . D 2 -1.42 18.874 69.692 1 55.84 ? N7 AMP 301 B 1 HETATM 17 C C5 AMP . . . D 2 -0.484 18.745 70.708 1 56.01 ? C5 AMP 301 B 1 HETATM 18 C C6 AMP . . . D 2 -0.171 17.679 71.582 1 52.4 ? C6 AMP 301 B 1 HETATM 19 N N6 AMP . . . D 2 -0.802 16.508 71.577 1 47.27 ? N6 AMP 301 B 1 HETATM 20 N N1 AMP . . . D 2 0.815 17.884 72.489 1 54.81 ? N1 AMP 301 B 1 HETATM 21 C C2 AMP . . . D 2 1.445 19.067 72.491 1 55.34 ? C2 AMP 301 B 1 HETATM 22 N N3 AMP . . . D 2 1.236 20.134 71.723 1 56.47 ? N3 AMP 301 B 1 HETATM 23 C C4 AMP . . . D 2 0.249 19.912 70.839 1 55.51 ? C4 AMP 301 B 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #