data_7P85 # _model_server_result.job_id 2uwfc7iTDQq0ZUCBd6mB2Q _model_server_result.datetime_utc '2024-11-28 07:16:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p85 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":410}' # _entry.id 7P85 # _exptl.entry_id 7P85 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7P85 _cell.length_a 69.298 _cell.length_b 69.298 _cell.length_c 186.926 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P85 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 69.298 -69.298 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 153 A LYS 169 1_555 C C FMT . A FMT 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? metalc ? metalc1 A NE2 HIS 39 A HIS 55 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc2 A NE2 HIS 41 A HIS 57 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc3 A ND1 HIS 185 A HIS 201 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc4 A NE2 HIS 214 A HIS 230 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc5 A OD1 ASP 285 A ASP 301 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc6 B O3 5ZG . A 5ZG 401 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc7 B O2 5ZG . A 5ZG 401 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc8 C O2 FMT . A FMT 402 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc9 C O1 FMT . A FMT 402 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 162 n n C1 C2 GOL sing 163 n n C1 H11 GOL sing 164 n n C1 H12 GOL sing 165 n n O1 HO1 GOL sing 166 n n C2 O2 GOL sing 167 n n C2 C3 GOL sing 168 n n C2 H2 GOL sing 169 n n O2 HO2 GOL sing 170 n n C3 O3 GOL sing 171 n n C3 H31 GOL sing 172 n n C3 H32 GOL sing 173 n n O3 HO3 GOL sing 174 n n # _atom_sites.entry_id 7P85 _atom_sites.fract_transf_matrix[1][1] 0.01443 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5ZG A 1 401 400 5ZG EBP . C 3 FMT A 1 402 401 FMT FMT . D 4 ZN A 1 403 1 ZN ZN . E 4 ZN A 1 404 2 ZN ZN . F 5 SO4 A 1 405 1 SO4 SO4 . G 5 SO4 A 1 406 2 SO4 SO4 . H 5 SO4 A 1 407 3 SO4 SO4 . I 6 GOL A 1 408 1 GOL GOL . J 6 GOL A 1 409 2 GOL GOL . K 6 GOL A 1 410 3 GOL GOL . L 7 HOH A 1 501 732 HOH HOH . L 7 HOH A 2 502 642 HOH HOH . L 7 HOH A 3 503 710 HOH HOH . L 7 HOH A 4 504 731 HOH HOH . L 7 HOH A 5 505 568 HOH HOH . L 7 HOH A 6 506 678 HOH HOH . L 7 HOH A 7 507 633 HOH HOH . L 7 HOH A 8 508 719 HOH HOH . L 7 HOH A 9 509 600 HOH HOH . L 7 HOH A 10 510 596 HOH HOH . L 7 HOH A 11 511 718 HOH HOH . L 7 HOH A 12 512 749 HOH HOH . L 7 HOH A 13 513 632 HOH HOH . L 7 HOH A 14 514 651 HOH HOH . L 7 HOH A 15 515 657 HOH HOH . L 7 HOH A 16 516 698 HOH HOH . L 7 HOH A 17 517 565 HOH HOH . L 7 HOH A 18 518 561 HOH HOH . L 7 HOH A 19 519 625 HOH HOH . L 7 HOH A 20 520 594 HOH HOH . L 7 HOH A 21 521 599 HOH HOH . L 7 HOH A 22 522 523 HOH HOH . L 7 HOH A 23 523 551 HOH HOH . L 7 HOH A 24 524 738 HOH HOH . L 7 HOH A 25 525 623 HOH HOH . L 7 HOH A 26 526 549 HOH HOH . L 7 HOH A 27 527 578 HOH HOH . L 7 HOH A 28 528 579 HOH HOH . L 7 HOH A 29 529 614 HOH HOH . L 7 HOH A 30 530 653 HOH HOH . L 7 HOH A 31 531 584 HOH HOH . L 7 HOH A 32 532 665 HOH HOH . L 7 HOH A 33 533 650 HOH HOH . L 7 HOH A 34 534 606 HOH HOH . L 7 HOH A 35 535 533 HOH HOH . L 7 HOH A 36 536 675 HOH HOH . L 7 HOH A 37 537 570 HOH HOH . L 7 HOH A 38 538 656 HOH HOH . L 7 HOH A 39 539 532 HOH HOH . L 7 HOH A 40 540 559 HOH HOH . L 7 HOH A 41 541 547 HOH HOH . L 7 HOH A 42 542 514 HOH HOH . L 7 HOH A 43 543 737 HOH HOH . L 7 HOH A 44 544 695 HOH HOH . L 7 HOH A 45 545 666 HOH HOH . L 7 HOH A 46 546 587 HOH HOH . L 7 HOH A 47 547 654 HOH HOH . L 7 HOH A 48 548 506 HOH HOH . L 7 HOH A 49 549 521 HOH HOH . L 7 HOH A 50 550 637 HOH HOH . L 7 HOH A 51 551 548 HOH HOH . L 7 HOH A 52 552 528 HOH HOH . L 7 HOH A 53 553 576 HOH HOH . L 7 HOH A 54 554 586 HOH HOH . L 7 HOH A 55 555 689 HOH HOH . L 7 HOH A 56 556 508 HOH HOH . L 7 HOH A 57 557 726 HOH HOH . L 7 HOH A 58 558 704 HOH HOH . L 7 HOH A 59 559 516 HOH HOH . L 7 HOH A 60 560 583 HOH HOH . L 7 HOH A 61 561 542 HOH HOH . L 7 HOH A 62 562 558 HOH HOH . L 7 HOH A 63 563 582 HOH HOH . L 7 HOH A 64 564 510 HOH HOH . L 7 HOH A 65 565 667 HOH HOH . L 7 HOH A 66 566 502 HOH HOH . L 7 HOH A 67 567 524 HOH HOH . L 7 HOH A 68 568 574 HOH HOH . L 7 HOH A 69 569 519 HOH HOH . L 7 HOH A 70 570 569 HOH HOH . L 7 HOH A 71 571 722 HOH HOH . L 7 HOH A 72 572 622 HOH HOH . L 7 HOH A 73 573 672 HOH HOH . L 7 HOH A 74 574 580 HOH HOH . L 7 HOH A 75 575 567 HOH HOH . L 7 HOH A 76 576 541 HOH HOH . L 7 HOH A 77 577 537 HOH HOH . L 7 HOH A 78 578 505 HOH HOH . L 7 HOH A 79 579 747 HOH HOH . L 7 HOH A 80 580 571 HOH HOH . L 7 HOH A 81 581 509 HOH HOH . L 7 HOH A 82 582 674 HOH HOH . L 7 HOH A 83 583 562 HOH HOH . L 7 HOH A 84 584 692 HOH HOH . L 7 HOH A 85 585 529 HOH HOH . L 7 HOH A 86 586 669 HOH HOH . L 7 HOH A 87 587 620 HOH HOH . L 7 HOH A 88 588 556 HOH HOH . L 7 HOH A 89 589 644 HOH HOH . L 7 HOH A 90 590 550 HOH HOH . L 7 HOH A 91 591 605 HOH HOH . L 7 HOH A 92 592 553 HOH HOH . L 7 HOH A 93 593 601 HOH HOH . L 7 HOH A 94 594 504 HOH HOH . L 7 HOH A 95 595 555 HOH HOH . L 7 HOH A 96 596 736 HOH HOH . L 7 HOH A 97 597 604 HOH HOH . L 7 HOH A 98 598 525 HOH HOH . L 7 HOH A 99 599 527 HOH HOH . L 7 HOH A 100 600 543 HOH HOH . L 7 HOH A 101 601 503 HOH HOH . L 7 HOH A 102 602 577 HOH HOH . L 7 HOH A 103 603 750 HOH HOH . L 7 HOH A 104 604 515 HOH HOH . L 7 HOH A 105 605 691 HOH HOH . L 7 HOH A 106 606 608 HOH HOH . L 7 HOH A 107 607 536 HOH HOH . L 7 HOH A 108 608 572 HOH HOH . L 7 HOH A 109 609 645 HOH HOH . L 7 HOH A 110 610 540 HOH HOH . L 7 HOH A 111 611 668 HOH HOH . L 7 HOH A 112 612 501 HOH HOH . L 7 HOH A 113 613 615 HOH HOH . L 7 HOH A 114 614 520 HOH HOH . L 7 HOH A 115 615 673 HOH HOH . L 7 HOH A 116 616 531 HOH HOH . L 7 HOH A 117 617 616 HOH HOH . L 7 HOH A 118 618 589 HOH HOH . L 7 HOH A 119 619 694 HOH HOH . L 7 HOH A 120 620 680 HOH HOH . L 7 HOH A 121 621 513 HOH HOH . L 7 HOH A 122 622 629 HOH HOH . L 7 HOH A 123 623 636 HOH HOH . L 7 HOH A 124 624 715 HOH HOH . L 7 HOH A 125 625 534 HOH HOH . L 7 HOH A 126 626 663 HOH HOH . L 7 HOH A 127 627 746 HOH HOH . L 7 HOH A 128 628 517 HOH HOH . L 7 HOH A 129 629 630 HOH HOH . L 7 HOH A 130 630 588 HOH HOH . L 7 HOH A 131 631 652 HOH HOH . L 7 HOH A 132 632 685 HOH HOH . L 7 HOH A 133 633 724 HOH HOH . L 7 HOH A 134 634 711 HOH HOH . L 7 HOH A 135 635 590 HOH HOH . L 7 HOH A 136 636 563 HOH HOH . L 7 HOH A 137 637 573 HOH HOH . L 7 HOH A 138 638 727 HOH HOH . L 7 HOH A 139 639 512 HOH HOH . L 7 HOH A 140 640 745 HOH HOH . L 7 HOH A 141 641 723 HOH HOH . L 7 HOH A 142 642 597 HOH HOH . L 7 HOH A 143 643 518 HOH HOH . L 7 HOH A 144 644 639 HOH HOH . L 7 HOH A 145 645 700 HOH HOH . L 7 HOH A 146 646 507 HOH HOH . L 7 HOH A 147 647 526 HOH HOH . L 7 HOH A 148 648 607 HOH HOH . L 7 HOH A 149 649 613 HOH HOH . L 7 HOH A 150 650 635 HOH HOH . L 7 HOH A 151 651 631 HOH HOH . L 7 HOH A 152 652 595 HOH HOH . L 7 HOH A 153 653 690 HOH HOH . L 7 HOH A 154 654 647 HOH HOH . L 7 HOH A 155 655 655 HOH HOH . L 7 HOH A 156 656 511 HOH HOH . L 7 HOH A 157 657 552 HOH HOH . L 7 HOH A 158 658 566 HOH HOH . L 7 HOH A 159 659 564 HOH HOH . L 7 HOH A 160 660 720 HOH HOH . L 7 HOH A 161 661 662 HOH HOH . L 7 HOH A 162 662 628 HOH HOH . L 7 HOH A 163 663 648 HOH HOH . L 7 HOH A 164 664 659 HOH HOH . L 7 HOH A 165 665 611 HOH HOH . L 7 HOH A 166 666 730 HOH HOH . L 7 HOH A 167 667 545 HOH HOH . L 7 HOH A 168 668 522 HOH HOH . L 7 HOH A 169 669 660 HOH HOH . L 7 HOH A 170 670 544 HOH HOH . L 7 HOH A 171 671 535 HOH HOH . L 7 HOH A 172 672 634 HOH HOH . L 7 HOH A 173 673 621 HOH HOH . L 7 HOH A 174 674 681 HOH HOH . L 7 HOH A 175 675 706 HOH HOH . L 7 HOH A 176 676 539 HOH HOH . L 7 HOH A 177 677 557 HOH HOH . L 7 HOH A 178 678 530 HOH HOH . L 7 HOH A 179 679 546 HOH HOH . L 7 HOH A 180 680 703 HOH HOH . L 7 HOH A 181 681 627 HOH HOH . L 7 HOH A 182 682 751 HOH HOH . L 7 HOH A 183 683 581 HOH HOH . L 7 HOH A 184 684 683 HOH HOH . L 7 HOH A 185 685 602 HOH HOH . L 7 HOH A 186 686 743 HOH HOH . L 7 HOH A 187 687 575 HOH HOH . L 7 HOH A 188 688 688 HOH HOH . L 7 HOH A 189 689 717 HOH HOH . L 7 HOH A 190 690 734 HOH HOH . L 7 HOH A 191 691 609 HOH HOH . L 7 HOH A 192 692 626 HOH HOH . L 7 HOH A 193 693 538 HOH HOH . L 7 HOH A 194 694 670 HOH HOH . L 7 HOH A 195 695 708 HOH HOH . L 7 HOH A 196 696 696 HOH HOH . L 7 HOH A 197 697 592 HOH HOH . L 7 HOH A 198 698 728 HOH HOH . L 7 HOH A 199 699 687 HOH HOH . L 7 HOH A 200 700 740 HOH HOH . L 7 HOH A 201 701 640 HOH HOH . L 7 HOH A 202 702 714 HOH HOH . L 7 HOH A 203 703 603 HOH HOH . L 7 HOH A 204 704 725 HOH HOH . L 7 HOH A 205 705 686 HOH HOH . L 7 HOH A 206 706 729 HOH HOH . L 7 HOH A 207 707 735 HOH HOH . L 7 HOH A 208 708 676 HOH HOH . L 7 HOH A 209 709 712 HOH HOH . L 7 HOH A 210 710 705 HOH HOH . L 7 HOH A 211 711 709 HOH HOH . L 7 HOH A 212 712 744 HOH HOH . L 7 HOH A 213 713 716 HOH HOH . L 7 HOH A 214 714 554 HOH HOH . L 7 HOH A 215 715 707 HOH HOH . L 7 HOH A 216 716 585 HOH HOH . L 7 HOH A 217 717 624 HOH HOH . L 7 HOH A 218 718 701 HOH HOH . L 7 HOH A 219 719 741 HOH HOH . L 7 HOH A 220 720 560 HOH HOH . L 7 HOH A 221 721 742 HOH HOH . L 7 HOH A 222 722 682 HOH HOH . L 7 HOH A 223 723 664 HOH HOH . L 7 HOH A 224 724 612 HOH HOH . L 7 HOH A 225 725 677 HOH HOH . L 7 HOH A 226 726 671 HOH HOH . L 7 HOH A 227 727 591 HOH HOH . L 7 HOH A 228 728 713 HOH HOH . L 7 HOH A 229 729 721 HOH HOH . L 7 HOH A 230 730 702 HOH HOH . L 7 HOH A 231 731 748 HOH HOH . L 7 HOH A 232 732 739 HOH HOH . L 7 HOH A 233 733 643 HOH HOH . L 7 HOH A 234 734 733 HOH HOH . L 7 HOH A 235 735 593 HOH HOH . L 7 HOH A 236 736 679 HOH HOH . L 7 HOH A 237 737 618 HOH HOH . L 7 HOH A 238 738 598 HOH HOH . L 7 HOH A 239 739 638 HOH HOH . L 7 HOH A 240 740 610 HOH HOH . L 7 HOH A 241 741 697 HOH HOH . L 7 HOH A 242 742 661 HOH HOH . L 7 HOH A 243 743 658 HOH HOH . L 7 HOH A 244 744 646 HOH HOH . L 7 HOH A 245 745 684 HOH HOH . L 7 HOH A 246 746 699 HOH HOH . L 7 HOH A 247 747 617 HOH HOH . L 7 HOH A 248 748 641 HOH HOH . L 7 HOH A 249 749 619 HOH HOH . L 7 HOH A 250 750 693 HOH HOH . L 7 HOH A 251 751 649 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 6 13.887 -48.017 17.31 1 27.48 ? C1 GOL 410 A 1 HETATM 2 O O1 GOL . . . K 6 14.714 -49.152 17.533 1 21.17 ? O1 GOL 410 A 1 HETATM 3 C C2 GOL . . . K 6 13.091 -47.651 18.554 1 29.54 ? C2 GOL 410 A 1 HETATM 4 O O2 GOL . . . K 6 13.6 -46.459 19.134 1 36.44 ? O2 GOL 410 A 1 HETATM 5 C C3 GOL . . . K 6 11.621 -47.425 18.328 1 33.26 ? C3 GOL 410 A 1 HETATM 6 O O3 GOL . . . K 6 11 -48.521 17.674 1 28.92 ? O3 GOL 410 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #