data_7P8G # _model_server_result.job_id AZxfHfK2rVgCb6e1GGA75g _model_server_result.datetime_utc '2024-12-21 12:38:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p8g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 7P8G # _exptl.entry_id 7P8G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7P8G _cell.length_a 101.423 _cell.length_b 101.423 _cell.length_c 122.625 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P8G _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall 'I 4bw' _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -101.423 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 261 n n C1 C3 MLI sing 262 n n C1 H11 MLI sing 263 n n C1 H12 MLI sing 264 n n C2 O6 MLI doub 265 n n C2 O7 MLI sing 266 n n C3 O8 MLI doub 267 n n C3 O9 MLI sing 268 n n # _atom_sites.entry_id 7P8G _atom_sites.fract_transf_matrix[1][1] 0.00986 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00986 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008155 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 401 322 CL CL . C 3 BGC A 1 402 1 BGC BGC . D 2 CL A 1 403 2 CL CL . E 2 CL A 1 404 3 CL CL . F 2 CL A 1 405 4 CL CL . G 4 MLI A 1 406 1 MLI MLI . H 5 HOH A 1 501 79 HOH HOH . H 5 HOH A 2 502 56 HOH HOH . H 5 HOH A 3 503 17 HOH HOH . H 5 HOH A 4 504 53 HOH HOH . H 5 HOH A 5 505 54 HOH HOH . H 5 HOH A 6 506 8 HOH HOH . H 5 HOH A 7 507 58 HOH HOH . H 5 HOH A 8 508 3 HOH HOH . H 5 HOH A 9 509 35 HOH HOH . H 5 HOH A 10 510 40 HOH HOH . H 5 HOH A 11 511 71 HOH HOH . H 5 HOH A 12 512 67 HOH HOH . H 5 HOH A 13 513 72 HOH HOH . H 5 HOH A 14 514 49 HOH HOH . H 5 HOH A 15 515 55 HOH HOH . H 5 HOH A 16 516 36 HOH HOH . H 5 HOH A 17 517 73 HOH HOH . H 5 HOH A 18 518 14 HOH HOH . H 5 HOH A 19 519 76 HOH HOH . H 5 HOH A 20 520 60 HOH HOH . H 5 HOH A 21 521 19 HOH HOH . H 5 HOH A 22 522 15 HOH HOH . H 5 HOH A 23 523 20 HOH HOH . H 5 HOH A 24 524 59 HOH HOH . H 5 HOH A 25 525 12 HOH HOH . H 5 HOH A 26 526 33 HOH HOH . H 5 HOH A 27 527 84 HOH HOH . H 5 HOH A 28 528 52 HOH HOH . H 5 HOH A 29 529 64 HOH HOH . H 5 HOH A 30 530 43 HOH HOH . H 5 HOH A 31 531 24 HOH HOH . H 5 HOH A 32 532 65 HOH HOH . H 5 HOH A 33 533 69 HOH HOH . H 5 HOH A 34 534 6 HOH HOH . H 5 HOH A 35 535 29 HOH HOH . H 5 HOH A 36 536 2 HOH HOH . H 5 HOH A 37 537 68 HOH HOH . H 5 HOH A 38 538 97 HOH HOH . H 5 HOH A 39 539 4 HOH HOH . H 5 HOH A 40 540 61 HOH HOH . H 5 HOH A 41 541 95 HOH HOH . H 5 HOH A 42 542 70 HOH HOH . H 5 HOH A 43 543 5 HOH HOH . H 5 HOH A 44 544 44 HOH HOH . H 5 HOH A 45 545 39 HOH HOH . H 5 HOH A 46 546 13 HOH HOH . H 5 HOH A 47 547 28 HOH HOH . H 5 HOH A 48 548 23 HOH HOH . H 5 HOH A 49 549 34 HOH HOH . H 5 HOH A 50 550 21 HOH HOH . H 5 HOH A 51 551 30 HOH HOH . H 5 HOH A 52 552 66 HOH HOH . H 5 HOH A 53 553 41 HOH HOH . H 5 HOH A 54 554 42 HOH HOH . H 5 HOH A 55 555 48 HOH HOH . H 5 HOH A 56 556 94 HOH HOH . H 5 HOH A 57 557 10 HOH HOH . H 5 HOH A 58 558 37 HOH HOH . H 5 HOH A 59 559 11 HOH HOH . H 5 HOH A 60 560 88 HOH HOH . H 5 HOH A 61 561 38 HOH HOH . H 5 HOH A 62 562 25 HOH HOH . H 5 HOH A 63 563 16 HOH HOH . H 5 HOH A 64 564 46 HOH HOH . H 5 HOH A 65 565 93 HOH HOH . H 5 HOH A 66 566 91 HOH HOH . H 5 HOH A 67 567 27 HOH HOH . H 5 HOH A 68 568 1 HOH HOH . H 5 HOH A 69 569 80 HOH HOH . H 5 HOH A 70 570 63 HOH HOH . H 5 HOH A 71 571 51 HOH HOH . H 5 HOH A 72 572 22 HOH HOH . H 5 HOH A 73 573 7 HOH HOH . H 5 HOH A 74 574 96 HOH HOH . H 5 HOH A 75 575 90 HOH HOH . H 5 HOH A 76 576 26 HOH HOH . H 5 HOH A 77 577 9 HOH HOH . H 5 HOH A 78 578 62 HOH HOH . H 5 HOH A 79 579 47 HOH HOH . H 5 HOH A 80 580 31 HOH HOH . H 5 HOH A 81 581 78 HOH HOH . H 5 HOH A 82 582 77 HOH HOH . H 5 HOH A 83 583 50 HOH HOH . H 5 HOH A 84 584 83 HOH HOH . H 5 HOH A 85 585 32 HOH HOH . H 5 HOH A 86 586 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . G 4 14.013 -34.148 -38.549 0.81 45.87 ? C1 MLI 406 A 1 HETATM 2 C C2 MLI . . . G 4 13.786 -34.611 -40.027 0.81 59.15 ? C2 MLI 406 A 1 HETATM 3 C C3 MLI . . . G 4 14.715 -35.125 -37.562 0.81 58.51 ? C3 MLI 406 A 1 HETATM 4 O O6 MLI . . . G 4 13.968 -33.783 -40.954 0.81 48.25 ? O6 MLI 406 A 1 HETATM 5 O O7 MLI . . . G 4 13.419 -35.789 -40.272 0.81 60.92 ? O7 MLI 406 A 1 HETATM 6 O O8 MLI . . . G 4 14.624 -36.316 -37.918 0.81 59.94 ? O8 MLI 406 A 1 HETATM 7 O O9 MLI . . . G 4 15.302 -34.713 -36.503 0.81 46.05 ? O9 MLI 406 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 49 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #