data_7P98
#
_model_server_result.job_id            abE6DhKnirLIfVAYMVf8qg 
_model_server_result.datetime_utc      '2024-12-04 20:26:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7p98 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    7P98 
#
_exptl.entry_id    7P98 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7P98 
_cell.length_a            76.32 
_cell.length_b            172.2 
_cell.length_c            331.46 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7P98 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        22 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,H 1 1,2,3,4 
B,F,G,I 2 1,5,6,7 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -76.32 0 0 
3 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -76.32 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
5 'crystal symmetry operation' 8_554 x,-y+1/2,-z-1/2 1 0 0 0 -1 0 0 0 -1 0 86.1 -165.73 
6 'crystal symmetry operation' 11_554 -x+1/2,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 38.16 0 -165.73 
7 'crystal symmetry operation' 14_555 -x+1/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 38.16 86.1 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 G N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 220 n n 
C1 C2 GOL sing 221 n n 
C1 H11 GOL sing 222 n n 
C1 H12 GOL sing 223 n n 
O1 HO1 GOL sing 224 n n 
C2 O2 GOL sing 225 n n 
C2 C3 GOL sing 226 n n 
C2 H2 GOL sing 227 n n 
O2 HO2 GOL sing 228 n n 
C3 O3 GOL sing 229 n n 
C3 H31 GOL sing 230 n n 
C3 H32 GOL sing 231 n n 
O3 HO3 GOL sing 232 n n 
#
_atom_sites.entry_id                     7P98 
_atom_sites.fract_transf_matrix[1][1]    0.013103 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005807 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003017 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 501 401 FAD FAD . 
D 3 GOL A 1 502 1 GOL GOL . 
E 3 GOL A 1 503 3 GOL GOL . 
F 2 FAD B 1 501 401 FAD FAD . 
G 3 GOL B 1 502 2 GOL GOL . 
H 4 HOH A 1 601 150 HOH HOH . 
H 4 HOH A 2 602 78 HOH HOH . 
H 4 HOH A 3 603 70 HOH HOH . 
H 4 HOH A 4 604 119 HOH HOH . 
H 4 HOH A 5 605 192 HOH HOH . 
H 4 HOH A 6 606 131 HOH HOH . 
H 4 HOH A 7 607 35 HOH HOH . 
H 4 HOH A 8 608 7 HOH HOH . 
H 4 HOH A 9 609 151 HOH HOH . 
H 4 HOH A 10 610 4 HOH HOH . 
H 4 HOH A 11 611 166 HOH HOH . 
H 4 HOH A 12 612 55 HOH HOH . 
H 4 HOH A 13 613 153 HOH HOH . 
H 4 HOH A 14 614 103 HOH HOH . 
H 4 HOH A 15 615 137 HOH HOH . 
H 4 HOH A 16 616 24 HOH HOH . 
H 4 HOH A 17 617 15 HOH HOH . 
H 4 HOH A 18 618 183 HOH HOH . 
H 4 HOH A 19 619 81 HOH HOH . 
H 4 HOH A 20 620 28 HOH HOH . 
H 4 HOH A 21 621 5 HOH HOH . 
H 4 HOH A 22 622 147 HOH HOH . 
H 4 HOH A 23 623 163 HOH HOH . 
H 4 HOH A 24 624 42 HOH HOH . 
H 4 HOH A 25 625 83 HOH HOH . 
H 4 HOH A 26 626 122 HOH HOH . 
H 4 HOH A 27 627 46 HOH HOH . 
H 4 HOH A 28 628 186 HOH HOH . 
H 4 HOH A 29 629 69 HOH HOH . 
H 4 HOH A 30 630 187 HOH HOH . 
H 4 HOH A 31 631 11 HOH HOH . 
H 4 HOH A 32 632 21 HOH HOH . 
H 4 HOH A 33 633 190 HOH HOH . 
H 4 HOH A 34 634 27 HOH HOH . 
H 4 HOH A 35 635 14 HOH HOH . 
H 4 HOH A 36 636 13 HOH HOH . 
H 4 HOH A 37 637 112 HOH HOH . 
H 4 HOH A 38 638 96 HOH HOH . 
H 4 HOH A 39 639 133 HOH HOH . 
H 4 HOH A 40 640 91 HOH HOH . 
H 4 HOH A 41 641 126 HOH HOH . 
H 4 HOH A 42 642 82 HOH HOH . 
H 4 HOH A 43 643 85 HOH HOH . 
H 4 HOH A 44 644 32 HOH HOH . 
H 4 HOH A 45 645 149 HOH HOH . 
H 4 HOH A 46 646 152 HOH HOH . 
H 4 HOH A 47 647 95 HOH HOH . 
H 4 HOH A 48 648 84 HOH HOH . 
H 4 HOH A 49 649 105 HOH HOH . 
H 4 HOH A 50 650 41 HOH HOH . 
H 4 HOH A 51 651 39 HOH HOH . 
H 4 HOH A 52 652 129 HOH HOH . 
H 4 HOH A 53 653 1 HOH HOH . 
H 4 HOH A 54 654 30 HOH HOH . 
H 4 HOH A 55 655 43 HOH HOH . 
H 4 HOH A 56 656 73 HOH HOH . 
H 4 HOH A 57 657 6 HOH HOH . 
H 4 HOH A 58 658 162 HOH HOH . 
H 4 HOH A 59 659 44 HOH HOH . 
H 4 HOH A 60 660 127 HOH HOH . 
H 4 HOH A 61 661 143 HOH HOH . 
H 4 HOH A 62 662 50 HOH HOH . 
H 4 HOH A 63 663 49 HOH HOH . 
H 4 HOH A 64 664 176 HOH HOH . 
H 4 HOH A 65 665 54 HOH HOH . 
H 4 HOH A 66 666 98 HOH HOH . 
H 4 HOH A 67 667 170 HOH HOH . 
H 4 HOH A 68 668 65 HOH HOH . 
H 4 HOH A 69 669 56 HOH HOH . 
H 4 HOH A 70 670 148 HOH HOH . 
H 4 HOH A 71 671 154 HOH HOH . 
H 4 HOH A 72 672 145 HOH HOH . 
H 4 HOH A 73 673 89 HOH HOH . 
H 4 HOH A 74 674 94 HOH HOH . 
H 4 HOH A 75 675 191 HOH HOH . 
H 4 HOH A 76 676 31 HOH HOH . 
H 4 HOH A 77 677 135 HOH HOH . 
H 4 HOH A 78 678 171 HOH HOH . 
H 4 HOH A 79 679 140 HOH HOH . 
H 4 HOH A 80 680 130 HOH HOH . 
H 4 HOH A 81 681 74 HOH HOH . 
H 4 HOH A 82 682 108 HOH HOH . 
H 4 HOH A 83 683 90 HOH HOH . 
H 4 HOH A 84 684 158 HOH HOH . 
H 4 HOH A 85 685 62 HOH HOH . 
H 4 HOH A 86 686 63 HOH HOH . 
H 4 HOH A 87 687 60 HOH HOH . 
H 4 HOH A 88 688 169 HOH HOH . 
H 4 HOH A 89 689 102 HOH HOH . 
H 4 HOH A 90 690 155 HOH HOH . 
H 4 HOH A 91 691 47 HOH HOH . 
H 4 HOH A 92 692 173 HOH HOH . 
H 4 HOH A 93 693 165 HOH HOH . 
H 4 HOH A 94 694 51 HOH HOH . 
H 4 HOH A 95 695 182 HOH HOH . 
H 4 HOH A 96 696 26 HOH HOH . 
H 4 HOH A 97 697 58 HOH HOH . 
H 4 HOH A 98 698 33 HOH HOH . 
H 4 HOH A 99 699 157 HOH HOH . 
H 4 HOH A 100 700 180 HOH HOH . 
H 4 HOH A 101 701 36 HOH HOH . 
H 4 HOH A 102 702 101 HOH HOH . 
H 4 HOH A 103 703 64 HOH HOH . 
H 4 HOH A 104 704 120 HOH HOH . 
H 4 HOH A 105 705 88 HOH HOH . 
H 4 HOH A 106 706 114 HOH HOH . 
I 4 HOH B 1 601 40 HOH HOH . 
I 4 HOH B 2 602 117 HOH HOH . 
I 4 HOH B 3 603 106 HOH HOH . 
I 4 HOH B 4 604 38 HOH HOH . 
I 4 HOH B 5 605 99 HOH HOH . 
I 4 HOH B 6 606 92 HOH HOH . 
I 4 HOH B 7 607 29 HOH HOH . 
I 4 HOH B 8 608 181 HOH HOH . 
I 4 HOH B 9 609 2 HOH HOH . 
I 4 HOH B 10 610 3 HOH HOH . 
I 4 HOH B 11 611 67 HOH HOH . 
I 4 HOH B 12 612 185 HOH HOH . 
I 4 HOH B 13 613 128 HOH HOH . 
I 4 HOH B 14 614 66 HOH HOH . 
I 4 HOH B 15 615 189 HOH HOH . 
I 4 HOH B 16 616 93 HOH HOH . 
I 4 HOH B 17 617 80 HOH HOH . 
I 4 HOH B 18 618 134 HOH HOH . 
I 4 HOH B 19 619 48 HOH HOH . 
I 4 HOH B 20 620 184 HOH HOH . 
I 4 HOH B 21 621 161 HOH HOH . 
I 4 HOH B 22 622 97 HOH HOH . 
I 4 HOH B 23 623 132 HOH HOH . 
I 4 HOH B 24 624 19 HOH HOH . 
I 4 HOH B 25 625 121 HOH HOH . 
I 4 HOH B 26 626 53 HOH HOH . 
I 4 HOH B 27 627 61 HOH HOH . 
I 4 HOH B 28 628 118 HOH HOH . 
I 4 HOH B 29 629 75 HOH HOH . 
I 4 HOH B 30 630 139 HOH HOH . 
I 4 HOH B 31 631 107 HOH HOH . 
I 4 HOH B 32 632 174 HOH HOH . 
I 4 HOH B 33 633 144 HOH HOH . 
I 4 HOH B 34 634 8 HOH HOH . 
I 4 HOH B 35 635 17 HOH HOH . 
I 4 HOH B 36 636 115 HOH HOH . 
I 4 HOH B 37 637 104 HOH HOH . 
I 4 HOH B 38 638 175 HOH HOH . 
I 4 HOH B 39 639 179 HOH HOH . 
I 4 HOH B 40 640 37 HOH HOH . 
I 4 HOH B 41 641 52 HOH HOH . 
I 4 HOH B 42 642 141 HOH HOH . 
I 4 HOH B 43 643 109 HOH HOH . 
I 4 HOH B 44 644 159 HOH HOH . 
I 4 HOH B 45 645 100 HOH HOH . 
I 4 HOH B 46 646 113 HOH HOH . 
I 4 HOH B 47 647 111 HOH HOH . 
I 4 HOH B 48 648 172 HOH HOH . 
I 4 HOH B 49 649 22 HOH HOH . 
I 4 HOH B 50 650 86 HOH HOH . 
I 4 HOH B 51 651 59 HOH HOH . 
I 4 HOH B 52 652 167 HOH HOH . 
I 4 HOH B 53 653 124 HOH HOH . 
I 4 HOH B 54 654 123 HOH HOH . 
I 4 HOH B 55 655 160 HOH HOH . 
I 4 HOH B 56 656 23 HOH HOH . 
I 4 HOH B 57 657 68 HOH HOH . 
I 4 HOH B 58 658 178 HOH HOH . 
I 4 HOH B 59 659 164 HOH HOH . 
I 4 HOH B 60 660 156 HOH HOH . 
I 4 HOH B 61 661 72 HOH HOH . 
I 4 HOH B 62 662 9 HOH HOH . 
I 4 HOH B 63 663 136 HOH HOH . 
I 4 HOH B 64 664 168 HOH HOH . 
I 4 HOH B 65 665 188 HOH HOH . 
I 4 HOH B 66 666 138 HOH HOH . 
I 4 HOH B 67 667 34 HOH HOH . 
I 4 HOH B 68 668 142 HOH HOH . 
I 4 HOH B 69 669 110 HOH HOH . 
I 4 HOH B 70 670 125 HOH HOH . 
I 4 HOH B 71 671 177 HOH HOH . 
I 4 HOH B 72 672 116 HOH HOH . 
I 4 HOH B 73 673 77 HOH HOH . 
I 4 HOH B 74 674 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 -29.803 -10.03 -16.554 1 53.6 ? C1 GOL 502 A 1 
HETATM 2 O O1 GOL . . . D 3 -29.754 -11.235 -17.226 1 55.08 ? O1 GOL 502 A 1 
HETATM 3 C C2 GOL . . . D 3 -31.114 -9.283 -16.876 1 51.45 ? C2 GOL 502 A 1 
HETATM 4 O O2 GOL . . . D 3 -30.928 -7.898 -16.934 1 50.97 ? O2 GOL 502 A 1 
HETATM 5 C C3 GOL . . . D 3 -31.614 -9.874 -18.19 1 49.69 ? C3 GOL 502 A 1 
HETATM 6 O O3 GOL . . . D 3 -32.825 -9.257 -18.419 1 50.24 ? O3 GOL 502 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#