data_7P9E # _model_server_result.job_id aM_qNGrUnQ2XoeaE3AjXlQ _model_server_result.datetime_utc '2024-11-09 02:28:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7P9E # _exptl.entry_id 7P9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.014 _cell.angle_gamma 90 _cell.entry_id 7P9E _cell.length_a 84.149 _cell.length_b 80.299 _cell.length_c 95.636 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 7P9E _atom_sites.fract_transf_matrix[1][1] 0.011884 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000003 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 401 FAD FAD . D 3 P4G A 1 502 2 P4G P4G . E 2 FAD B 1 501 401 FAD FAD . F 3 P4G B 1 502 1 P4G P4G . G 4 HOH A 1 601 21 HOH HOH . G 4 HOH A 2 602 54 HOH HOH . G 4 HOH A 3 603 36 HOH HOH . G 4 HOH A 4 604 43 HOH HOH . G 4 HOH A 5 605 86 HOH HOH . G 4 HOH A 6 606 15 HOH HOH . G 4 HOH A 7 607 85 HOH HOH . G 4 HOH A 8 608 88 HOH HOH . G 4 HOH A 9 609 47 HOH HOH . G 4 HOH A 10 610 92 HOH HOH . G 4 HOH A 11 611 18 HOH HOH . G 4 HOH A 12 612 102 HOH HOH . G 4 HOH A 13 613 16 HOH HOH . G 4 HOH A 14 614 94 HOH HOH . G 4 HOH A 15 615 118 HOH HOH . G 4 HOH A 16 616 58 HOH HOH . G 4 HOH A 17 617 19 HOH HOH . G 4 HOH A 18 618 44 HOH HOH . G 4 HOH A 19 619 100 HOH HOH . G 4 HOH A 20 620 39 HOH HOH . G 4 HOH A 21 621 72 HOH HOH . G 4 HOH A 22 622 61 HOH HOH . G 4 HOH A 23 623 4 HOH HOH . G 4 HOH A 24 624 11 HOH HOH . G 4 HOH A 25 625 65 HOH HOH . G 4 HOH A 26 626 67 HOH HOH . G 4 HOH A 27 627 40 HOH HOH . G 4 HOH A 28 628 71 HOH HOH . G 4 HOH A 29 629 87 HOH HOH . G 4 HOH A 30 630 90 HOH HOH . G 4 HOH A 31 631 7 HOH HOH . G 4 HOH A 32 632 83 HOH HOH . G 4 HOH A 33 633 84 HOH HOH . G 4 HOH A 34 634 125 HOH HOH . G 4 HOH A 35 635 76 HOH HOH . G 4 HOH A 36 636 89 HOH HOH . G 4 HOH A 37 637 53 HOH HOH . G 4 HOH A 38 638 37 HOH HOH . G 4 HOH A 39 639 6 HOH HOH . G 4 HOH A 40 640 117 HOH HOH . G 4 HOH A 41 641 121 HOH HOH . G 4 HOH A 42 642 119 HOH HOH . G 4 HOH A 43 643 120 HOH HOH . G 4 HOH A 44 644 124 HOH HOH . H 4 HOH B 1 601 23 HOH HOH . H 4 HOH B 2 602 22 HOH HOH . H 4 HOH B 3 603 27 HOH HOH . H 4 HOH B 4 604 80 HOH HOH . H 4 HOH B 5 605 51 HOH HOH . H 4 HOH B 6 606 12 HOH HOH . H 4 HOH B 7 607 26 HOH HOH . H 4 HOH B 8 608 59 HOH HOH . H 4 HOH B 9 609 46 HOH HOH . H 4 HOH B 10 610 29 HOH HOH . H 4 HOH B 11 611 13 HOH HOH . H 4 HOH B 12 612 5 HOH HOH . H 4 HOH B 13 613 28 HOH HOH . H 4 HOH B 14 614 24 HOH HOH . H 4 HOH B 15 615 3 HOH HOH . H 4 HOH B 16 616 41 HOH HOH . H 4 HOH B 17 617 48 HOH HOH . H 4 HOH B 18 618 2 HOH HOH . H 4 HOH B 19 619 42 HOH HOH . H 4 HOH B 20 620 97 HOH HOH . H 4 HOH B 21 621 91 HOH HOH . H 4 HOH B 22 622 25 HOH HOH . H 4 HOH B 23 623 45 HOH HOH . H 4 HOH B 24 624 109 HOH HOH . H 4 HOH B 25 625 60 HOH HOH . H 4 HOH B 26 626 115 HOH HOH . H 4 HOH B 27 627 68 HOH HOH . H 4 HOH B 28 628 10 HOH HOH . H 4 HOH B 29 629 62 HOH HOH . H 4 HOH B 30 630 14 HOH HOH . H 4 HOH B 31 631 20 HOH HOH . H 4 HOH B 32 632 64 HOH HOH . H 4 HOH B 33 633 8 HOH HOH . H 4 HOH B 34 634 114 HOH HOH . H 4 HOH B 35 635 79 HOH HOH . H 4 HOH B 36 636 56 HOH HOH . H 4 HOH B 37 637 103 HOH HOH . H 4 HOH B 38 638 38 HOH HOH . H 4 HOH B 39 639 105 HOH HOH . H 4 HOH B 40 640 127 HOH HOH . H 4 HOH B 41 641 52 HOH HOH . H 4 HOH B 42 642 128 HOH HOH . H 4 HOH B 43 643 126 HOH HOH . H 4 HOH B 44 644 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 2 9.756 -7.638 36.297 1 37.47 ? PA FAD 501 B 1 HETATM 2 O O1A FAD . . . E 2 8.494 -7.564 35.514 1 38.39 ? O1A FAD 501 B 1 HETATM 3 O O2A FAD . . . E 2 10.138 -6.288 36.918 1 42.15 ? O2A FAD 501 B 1 HETATM 4 O O5B FAD . . . E 2 9.608 -8.832 37.447 1 41.45 ? O5B FAD 501 B 1 HETATM 5 C C5B FAD . . . E 2 10.333 -8.746 38.589 1 38.94 ? C5B FAD 501 B 1 HETATM 6 C C4B FAD . . . E 2 9.696 -9.743 39.613 1 41.54 ? C4B FAD 501 B 1 HETATM 7 O O4B FAD . . . E 2 10.582 -10.061 40.537 1 39.05 ? O4B FAD 501 B 1 HETATM 8 C C3B FAD . . . E 2 8.531 -9.069 40.312 1 40.65 ? C3B FAD 501 B 1 HETATM 9 O O3B FAD . . . E 2 7.43 -9.873 40.215 1 37.93 ? O3B FAD 501 B 1 HETATM 10 C C2B FAD . . . E 2 9.076 -8.919 41.763 1 40.88 ? C2B FAD 501 B 1 HETATM 11 O O2B FAD . . . E 2 7.924 -8.84 42.732 1 44.01 ? O2B FAD 501 B 1 HETATM 12 C C1B FAD . . . E 2 9.804 -9.988 41.916 1 39.16 ? C1B FAD 501 B 1 HETATM 13 N N9A FAD . . . E 2 10.808 -9.784 42.988 1 45.85 ? N9A FAD 501 B 1 HETATM 14 C C8A FAD . . . E 2 11.726 -8.822 43.052 1 42.17 ? C8A FAD 501 B 1 HETATM 15 N N7A FAD . . . E 2 12.424 -8.995 44.195 1 39.75 ? N7A FAD 501 B 1 HETATM 16 C C5A FAD . . . E 2 11.914 -10.063 44.838 1 43.25 ? C5A FAD 501 B 1 HETATM 17 C C6A FAD . . . E 2 12.246 -10.641 46.063 1 43.96 ? C6A FAD 501 B 1 HETATM 18 N N6A FAD . . . E 2 13.252 -10.33 47.076 1 38.43 ? N6A FAD 501 B 1 HETATM 19 N N1A FAD . . . E 2 11.58 -11.714 46.495 1 45.02 ? N1A FAD 501 B 1 HETATM 20 C C2A FAD . . . E 2 10.565 -12.236 45.724 1 48.19 ? C2A FAD 501 B 1 HETATM 21 N N3A FAD . . . E 2 10.227 -11.661 44.52 1 41.97 ? N3A FAD 501 B 1 HETATM 22 C C4A FAD . . . E 2 10.909 -10.572 44.101 1 43.34 ? C4A FAD 501 B 1 HETATM 23 N N1 FAD . . . E 2 7.74 -4.076 27.936 1 42.05 ? N1 FAD 501 B 1 HETATM 24 C C2 FAD . . . E 2 7.063 -4.605 26.74 1 39.07 ? C2 FAD 501 B 1 HETATM 25 O O2 FAD . . . E 2 7.541 -5.552 26.11 1 46.1 ? O2 FAD 501 B 1 HETATM 26 N N3 FAD . . . E 2 5.778 -3.974 26.279 1 38.92 ? N3 FAD 501 B 1 HETATM 27 C C4 FAD . . . E 2 5.212 -2.871 26.972 1 42.76 ? C4 FAD 501 B 1 HETATM 28 O O4 FAD . . . E 2 4.189 -2.392 26.582 1 42.83 ? O4 FAD 501 B 1 HETATM 29 C C4X FAD . . . E 2 5.91 -2.351 28.227 1 43.72 ? C4X FAD 501 B 1 HETATM 30 N N5 FAD . . . E 2 5.342 -1.241 28.965 1 46.26 ? N5 FAD 501 B 1 HETATM 31 C C5X FAD . . . E 2 6.051 -0.729 30.179 1 50.02 ? C5X FAD 501 B 1 HETATM 32 C C6 FAD . . . E 2 5.496 0.361 30.887 1 52.52 ? C6 FAD 501 B 1 HETATM 33 C C7 FAD . . . E 2 6.144 0.843 32.023 1 59.59 ? C7 FAD 501 B 1 HETATM 34 C C7M FAD . . . E 2 5.402 2.028 32.679 1 58.34 ? C7M FAD 501 B 1 HETATM 35 C C8 FAD . . . E 2 7.342 0.253 32.452 1 60.24 ? C8 FAD 501 B 1 HETATM 36 C C8M FAD . . . E 2 8.103 0.749 33.709 1 57.43 ? C8M FAD 501 B 1 HETATM 37 C C9 FAD . . . E 2 7.903 -0.829 31.73 1 50.23 ? C9 FAD 501 B 1 HETATM 38 C C9A FAD . . . E 2 7.247 -1.309 30.596 1 47.44 ? C9A FAD 501 B 1 HETATM 39 N N10 FAD . . . E 2 7.832 -2.477 29.819 1 43.27 ? N10 FAD 501 B 1 HETATM 40 C C10 FAD . . . E 2 7.149 -2.962 28.663 1 43.48 ? C10 FAD 501 B 1 HETATM 41 C C1' FAD . . . E 2 9.092 -3.157 30.217 1 42.23 ? C1' FAD 501 B 1 HETATM 42 C C2' FAD . . . E 2 8.676 -4.448 30.871 1 41.47 ? C2' FAD 501 B 1 HETATM 43 O O2' FAD . . . E 2 7.922 -4.134 31.985 1 45.74 ? O2' FAD 501 B 1 HETATM 44 C C3' FAD . . . E 2 9.892 -5.28 31.328 1 43.07 ? C3' FAD 501 B 1 HETATM 45 O O3' FAD . . . E 2 10.719 -5.568 30.27 1 38.91 ? O3' FAD 501 B 1 HETATM 46 C C4' FAD . . . E 2 9.421 -6.604 31.904 1 43.61 ? C4' FAD 501 B 1 HETATM 47 O O4' FAD . . . E 2 8.591 -6.404 33.01 1 39.41 ? O4' FAD 501 B 1 HETATM 48 C C5' FAD . . . E 2 10.653 -7.384 32.358 1 35.8 ? C5' FAD 501 B 1 HETATM 49 O O5' FAD . . . E 2 10.132 -8.551 32.97 1 42.99 ? O5' FAD 501 B 1 HETATM 50 P P FAD . . . E 2 10.975 -9.263 34.237 1 35.45 ? P FAD 501 B 1 HETATM 51 O O1P FAD . . . E 2 10.17 -10.477 34.655 1 40.11 ? O1P FAD 501 B 1 HETATM 52 O O2P FAD . . . E 2 12.465 -9.557 33.925 1 40.48 ? O2P FAD 501 B 1 HETATM 53 O O3P FAD . . . E 2 11.074 -8.127 35.415 1 37.44 ? O3P FAD 501 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #