data_7P9T # _model_server_result.job_id 4OopcVSQwDtVTxxQzeHxoQ _model_server_result.datetime_utc '2024-11-08 07:06:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7p9t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 7P9T # _exptl.entry_id 7P9T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7P9T _cell.length_a 68.104 _cell.length_b 132.846 _cell.length_c 67.404 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7P9T _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 68.104 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 51 1_555 A SG CYS 54 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? disulf ? disulf2 A SG CYS 350 A CYS 353 1_555 A SG CYS 355 A CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf3 A SG CYS 362 A CYS 365 1_555 A SG CYS 384 A CYS 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf4 A SG CYS 473 A CYS 476 1_555 A SG CYS 476 A CYS 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc1 A OD1 ASP 33 A ASP 36 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc2 A NE2 HIS 35 A HIS 38 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc3 A OD2 ASP 82 A ASP 85 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc4 A OD2 ASP 82 A ASP 85 1_555 C ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc5 A OD1 ASN 114 A ASN 117 1_555 C ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc6 A O ASN 210 A ASN 213 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc7 A NE2 HIS 217 A HIS 220 1_555 C ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc8 A OD1 ASP 234 A ASP 237 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc9 A OD2 ASP 234 A ASP 237 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc10 A ND1 HIS 240 A HIS 243 1_555 C ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc11 A O GLY 295 A GLY 298 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc12 B ZN ZN . A ZN 601 1_555 F O HOH . A HOH 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc13 D CA CA . A CA 603 1_555 F O HOH . A HOH 739 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc14 D CA CA . A CA 603 1_555 F O HOH . A HOH 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc15 D CA CA . A CA 603 1_555 F O HOH . A HOH 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7P9T _atom_sites.fract_transf_matrix[1][1] 0.014683 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007528 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 601 601 ZN ZN . C 2 ZN A 1 602 602 ZN ZN . D 3 CA A 1 603 603 CA CA . E 4 DCM A 1 604 604 DCM DCM . F 5 HOH A 1 701 821 HOH HOH . F 5 HOH A 2 702 888 HOH HOH . F 5 HOH A 3 703 818 HOH HOH . F 5 HOH A 4 704 832 HOH HOH . F 5 HOH A 5 705 857 HOH HOH . F 5 HOH A 6 706 829 HOH HOH . F 5 HOH A 7 707 838 HOH HOH . F 5 HOH A 8 708 847 HOH HOH . F 5 HOH A 9 709 783 HOH HOH . F 5 HOH A 10 710 714 HOH HOH . F 5 HOH A 11 711 816 HOH HOH . F 5 HOH A 12 712 797 HOH HOH . F 5 HOH A 13 713 875 HOH HOH . F 5 HOH A 14 714 835 HOH HOH . F 5 HOH A 15 715 772 HOH HOH . F 5 HOH A 16 716 887 HOH HOH . F 5 HOH A 17 717 884 HOH HOH . F 5 HOH A 18 718 740 HOH HOH . F 5 HOH A 19 719 850 HOH HOH . F 5 HOH A 20 720 725 HOH HOH . F 5 HOH A 21 721 745 HOH HOH . F 5 HOH A 22 722 721 HOH HOH . F 5 HOH A 23 723 859 HOH HOH . F 5 HOH A 24 724 801 HOH HOH . F 5 HOH A 25 725 730 HOH HOH . F 5 HOH A 26 726 808 HOH HOH . F 5 HOH A 27 727 787 HOH HOH . F 5 HOH A 28 728 757 HOH HOH . F 5 HOH A 29 729 894 HOH HOH . F 5 HOH A 30 730 845 HOH HOH . F 5 HOH A 31 731 729 HOH HOH . F 5 HOH A 32 732 776 HOH HOH . F 5 HOH A 33 733 752 HOH HOH . F 5 HOH A 34 734 767 HOH HOH . F 5 HOH A 35 735 844 HOH HOH . F 5 HOH A 36 736 856 HOH HOH . F 5 HOH A 37 737 794 HOH HOH . F 5 HOH A 38 738 754 HOH HOH . F 5 HOH A 39 739 890 HOH HOH . F 5 HOH A 40 740 860 HOH HOH . F 5 HOH A 41 741 742 HOH HOH . F 5 HOH A 42 742 812 HOH HOH . F 5 HOH A 43 743 907 HOH HOH . F 5 HOH A 44 744 771 HOH HOH . F 5 HOH A 45 745 795 HOH HOH . F 5 HOH A 46 746 702 HOH HOH . F 5 HOH A 47 747 909 HOH HOH . F 5 HOH A 48 748 723 HOH HOH . F 5 HOH A 49 749 879 HOH HOH . F 5 HOH A 50 750 717 HOH HOH . F 5 HOH A 51 751 763 HOH HOH . F 5 HOH A 52 752 708 HOH HOH . F 5 HOH A 53 753 785 HOH HOH . F 5 HOH A 54 754 701 HOH HOH . F 5 HOH A 55 755 908 HOH HOH . F 5 HOH A 56 756 713 HOH HOH . F 5 HOH A 57 757 873 HOH HOH . F 5 HOH A 58 758 733 HOH HOH . F 5 HOH A 59 759 753 HOH HOH . F 5 HOH A 60 760 827 HOH HOH . F 5 HOH A 61 761 853 HOH HOH . F 5 HOH A 62 762 707 HOH HOH . F 5 HOH A 63 763 892 HOH HOH . F 5 HOH A 64 764 800 HOH HOH . F 5 HOH A 65 765 747 HOH HOH . F 5 HOH A 66 766 732 HOH HOH . F 5 HOH A 67 767 720 HOH HOH . F 5 HOH A 68 768 817 HOH HOH . F 5 HOH A 69 769 885 HOH HOH . F 5 HOH A 70 770 911 HOH HOH . F 5 HOH A 71 771 768 HOH HOH . F 5 HOH A 72 772 811 HOH HOH . F 5 HOH A 73 773 807 HOH HOH . F 5 HOH A 74 774 750 HOH HOH . F 5 HOH A 75 775 798 HOH HOH . F 5 HOH A 76 776 760 HOH HOH . F 5 HOH A 77 777 727 HOH HOH . F 5 HOH A 78 778 848 HOH HOH . F 5 HOH A 79 779 867 HOH HOH . F 5 HOH A 80 780 782 HOH HOH . F 5 HOH A 81 781 822 HOH HOH . F 5 HOH A 82 782 874 HOH HOH . F 5 HOH A 83 783 731 HOH HOH . F 5 HOH A 84 784 865 HOH HOH . F 5 HOH A 85 785 820 HOH HOH . F 5 HOH A 86 786 743 HOH HOH . F 5 HOH A 87 787 921 HOH HOH . F 5 HOH A 88 788 891 HOH HOH . F 5 HOH A 89 789 704 HOH HOH . F 5 HOH A 90 790 854 HOH HOH . F 5 HOH A 91 791 722 HOH HOH . F 5 HOH A 92 792 737 HOH HOH . F 5 HOH A 93 793 715 HOH HOH . F 5 HOH A 94 794 792 HOH HOH . F 5 HOH A 95 795 824 HOH HOH . F 5 HOH A 96 796 719 HOH HOH . F 5 HOH A 97 797 901 HOH HOH . F 5 HOH A 98 798 705 HOH HOH . F 5 HOH A 99 799 755 HOH HOH . F 5 HOH A 100 800 926 HOH HOH . F 5 HOH A 101 801 746 HOH HOH . F 5 HOH A 102 802 839 HOH HOH . F 5 HOH A 103 803 862 HOH HOH . F 5 HOH A 104 804 897 HOH HOH . F 5 HOH A 105 805 863 HOH HOH . F 5 HOH A 106 806 739 HOH HOH . F 5 HOH A 107 807 803 HOH HOH . F 5 HOH A 108 808 870 HOH HOH . F 5 HOH A 109 809 779 HOH HOH . F 5 HOH A 110 810 751 HOH HOH . F 5 HOH A 111 811 712 HOH HOH . F 5 HOH A 112 812 843 HOH HOH . F 5 HOH A 113 813 710 HOH HOH . F 5 HOH A 114 814 880 HOH HOH . F 5 HOH A 115 815 744 HOH HOH . F 5 HOH A 116 816 918 HOH HOH . F 5 HOH A 117 817 738 HOH HOH . F 5 HOH A 118 818 912 HOH HOH . F 5 HOH A 119 819 833 HOH HOH . F 5 HOH A 120 820 741 HOH HOH . F 5 HOH A 121 821 766 HOH HOH . F 5 HOH A 122 822 869 HOH HOH . F 5 HOH A 123 823 837 HOH HOH . F 5 HOH A 124 824 841 HOH HOH . F 5 HOH A 125 825 734 HOH HOH . F 5 HOH A 126 826 749 HOH HOH . F 5 HOH A 127 827 836 HOH HOH . F 5 HOH A 128 828 793 HOH HOH . F 5 HOH A 129 829 799 HOH HOH . F 5 HOH A 130 830 858 HOH HOH . F 5 HOH A 131 831 770 HOH HOH . F 5 HOH A 132 832 915 HOH HOH . F 5 HOH A 133 833 711 HOH HOH . F 5 HOH A 134 834 756 HOH HOH . F 5 HOH A 135 835 706 HOH HOH . F 5 HOH A 136 836 781 HOH HOH . F 5 HOH A 137 837 849 HOH HOH . F 5 HOH A 138 838 814 HOH HOH . F 5 HOH A 139 839 831 HOH HOH . F 5 HOH A 140 840 834 HOH HOH . F 5 HOH A 141 841 861 HOH HOH . F 5 HOH A 142 842 905 HOH HOH . F 5 HOH A 143 843 765 HOH HOH . F 5 HOH A 144 844 735 HOH HOH . F 5 HOH A 145 845 762 HOH HOH . F 5 HOH A 146 846 868 HOH HOH . F 5 HOH A 147 847 758 HOH HOH . F 5 HOH A 148 848 864 HOH HOH . F 5 HOH A 149 849 840 HOH HOH . F 5 HOH A 150 850 786 HOH HOH . F 5 HOH A 151 851 914 HOH HOH . F 5 HOH A 152 852 855 HOH HOH . F 5 HOH A 153 853 761 HOH HOH . F 5 HOH A 154 854 830 HOH HOH . F 5 HOH A 155 855 724 HOH HOH . F 5 HOH A 156 856 825 HOH HOH . F 5 HOH A 157 857 883 HOH HOH . F 5 HOH A 158 858 920 HOH HOH . F 5 HOH A 159 859 775 HOH HOH . F 5 HOH A 160 860 709 HOH HOH . F 5 HOH A 161 861 893 HOH HOH . F 5 HOH A 162 862 728 HOH HOH . F 5 HOH A 163 863 923 HOH HOH . F 5 HOH A 164 864 917 HOH HOH . F 5 HOH A 165 865 774 HOH HOH . F 5 HOH A 166 866 922 HOH HOH . F 5 HOH A 167 867 826 HOH HOH . F 5 HOH A 168 868 809 HOH HOH . F 5 HOH A 169 869 881 HOH HOH . F 5 HOH A 170 870 913 HOH HOH . F 5 HOH A 171 871 815 HOH HOH . F 5 HOH A 172 872 846 HOH HOH . F 5 HOH A 173 873 877 HOH HOH . F 5 HOH A 174 874 886 HOH HOH . F 5 HOH A 175 875 773 HOH HOH . F 5 HOH A 176 876 819 HOH HOH . F 5 HOH A 177 877 726 HOH HOH . F 5 HOH A 178 878 789 HOH HOH . F 5 HOH A 179 879 802 HOH HOH . F 5 HOH A 180 880 889 HOH HOH . F 5 HOH A 181 881 759 HOH HOH . F 5 HOH A 182 882 764 HOH HOH . F 5 HOH A 183 883 813 HOH HOH . F 5 HOH A 184 884 866 HOH HOH . F 5 HOH A 185 885 703 HOH HOH . F 5 HOH A 186 886 748 HOH HOH . F 5 HOH A 187 887 852 HOH HOH . F 5 HOH A 188 888 842 HOH HOH . F 5 HOH A 189 889 790 HOH HOH . F 5 HOH A 190 890 777 HOH HOH . F 5 HOH A 191 891 878 HOH HOH . F 5 HOH A 192 892 810 HOH HOH . F 5 HOH A 193 893 796 HOH HOH . F 5 HOH A 194 894 791 HOH HOH . F 5 HOH A 195 895 903 HOH HOH . F 5 HOH A 196 896 899 HOH HOH . F 5 HOH A 197 897 876 HOH HOH . F 5 HOH A 198 898 919 HOH HOH . F 5 HOH A 199 899 910 HOH HOH . F 5 HOH A 200 900 895 HOH HOH . F 5 HOH A 201 901 924 HOH HOH . F 5 HOH A 202 902 882 HOH HOH . F 5 HOH A 203 903 780 HOH HOH . F 5 HOH A 204 904 788 HOH HOH . F 5 HOH A 205 905 896 HOH HOH . F 5 HOH A 206 906 916 HOH HOH . F 5 HOH A 207 907 872 HOH HOH . F 5 HOH A 208 908 804 HOH HOH . F 5 HOH A 209 909 900 HOH HOH . F 5 HOH A 210 910 823 HOH HOH . F 5 HOH A 211 911 871 HOH HOH . F 5 HOH A 212 912 902 HOH HOH . F 5 HOH A 213 913 851 HOH HOH . F 5 HOH A 214 914 925 HOH HOH . F 5 HOH A 215 915 784 HOH HOH . F 5 HOH A 216 916 904 HOH HOH . F 5 HOH A 217 917 898 HOH HOH . F 5 HOH A 218 918 778 HOH HOH . F 5 HOH A 219 919 716 HOH HOH . F 5 HOH A 220 920 769 HOH HOH . F 5 HOH A 221 921 805 HOH HOH . F 5 HOH A 222 922 828 HOH HOH . F 5 HOH A 223 923 906 HOH HOH . F 5 HOH A 224 924 736 HOH HOH . F 5 HOH A 225 925 806 HOH HOH . F 5 HOH A 226 926 718 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 31.561 _atom_site.Cartn_y 54.029 _atom_site.Cartn_z 11.103 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.08 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 603 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 1 #