data_7PA1 # _model_server_result.job_id '_bNUC-vZNUQJxc5zO62I6A' _model_server_result.datetime_utc '2024-11-19 16:40:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pa1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":610}' # _entry.id 7PA1 # _exptl.entry_id 7PA1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7PA1 _cell.length_a 121.265 _cell.length_b 121.265 _cell.length_c 91.684 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PA1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N ? 6 J N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N ? 6 T N N ? 6 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 272 AAA HIS 157 1_555 E ZN ZN . AAA ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc2 A SG CYS 293 AAA CYS 178 1_555 E ZN ZN . AAA ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc3 A SG CYS 295 AAA CYS 180 1_555 E ZN ZN . AAA ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc4 A SG CYS 300 AAA CYS 185 1_555 E ZN ZN . AAA ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc5 B ND1 HIS 272 BBB HIS 157 1_555 M ZN ZN . BBB ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc6 B SG CYS 293 BBB CYS 178 1_555 M ZN ZN . BBB ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc7 B SG CYS 295 BBB CYS 180 1_555 M ZN ZN . BBB ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc8 B SG CYS 300 BBB CYS 185 1_555 M ZN ZN . BBB ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 133 n n C1 C2 EDO sing 134 n n C1 H11 EDO sing 135 n n C1 H12 EDO sing 136 n n O1 HO1 EDO sing 137 n n C2 O2 EDO sing 138 n n C2 H21 EDO sing 139 n n C2 H22 EDO sing 140 n n O2 HO2 EDO sing 141 n n # _atom_sites.entry_id 7PA1 _atom_sites.fract_transf_matrix[1][1] 0.008246 _atom_sites.fract_transf_matrix[1][2] 0.004761 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG AAA 1 1001 1001 PEG PEG . D 3 ANP AAA 1 1002 1101 ANP ANP . E 4 ZN AAA 1 1003 1 ZN ZN . F 5 PGE AAA 1 1004 3 PGE PGE . G 5 PGE AAA 1 1005 5 PGE PGE . H 6 EDO AAA 1 1006 15 EDO EDO . I 6 EDO AAA 1 1007 20 EDO EDO . J 6 EDO AAA 1 1008 22 EDO EDO . K 2 PEG BBB 1 601 601 PEG PEG . L 3 ANP BBB 1 602 701 ANP ANP . M 4 ZN BBB 1 603 2 ZN ZN . N 5 PGE BBB 1 604 2 PGE PGE . O 5 PGE BBB 1 605 4 PGE PGE . P 6 EDO BBB 1 606 14 EDO EDO . Q 6 EDO BBB 1 607 16 EDO EDO . R 6 EDO BBB 1 608 17 EDO EDO . S 6 EDO BBB 1 609 18 EDO EDO . T 6 EDO BBB 1 610 19 EDO EDO . U 6 EDO BBB 1 611 21 EDO EDO . V 7 HOH AAA 1 1101 32 HOH HOH . V 7 HOH AAA 2 1102 166 HOH HOH . V 7 HOH AAA 3 1103 15 HOH HOH . V 7 HOH AAA 4 1104 131 HOH HOH . V 7 HOH AAA 5 1105 2 HOH HOH . V 7 HOH AAA 6 1106 20 HOH HOH . V 7 HOH AAA 7 1107 65 HOH HOH . V 7 HOH AAA 8 1108 34 HOH HOH . V 7 HOH AAA 9 1109 22 HOH HOH . V 7 HOH AAA 10 1110 9 HOH HOH . V 7 HOH AAA 11 1111 19 HOH HOH . V 7 HOH AAA 12 1112 129 HOH HOH . V 7 HOH AAA 13 1113 136 HOH HOH . V 7 HOH AAA 14 1114 1 HOH HOH . V 7 HOH AAA 15 1115 81 HOH HOH . V 7 HOH AAA 16 1116 145 HOH HOH . V 7 HOH AAA 17 1117 146 HOH HOH . V 7 HOH AAA 18 1118 31 HOH HOH . V 7 HOH AAA 19 1119 17 HOH HOH . V 7 HOH AAA 20 1120 40 HOH HOH . V 7 HOH AAA 21 1121 38 HOH HOH . V 7 HOH AAA 22 1122 24 HOH HOH . V 7 HOH AAA 23 1123 26 HOH HOH . V 7 HOH AAA 24 1124 134 HOH HOH . V 7 HOH AAA 25 1125 16 HOH HOH . V 7 HOH AAA 26 1126 63 HOH HOH . V 7 HOH AAA 27 1127 71 HOH HOH . V 7 HOH AAA 28 1128 52 HOH HOH . V 7 HOH AAA 29 1129 41 HOH HOH . V 7 HOH AAA 30 1130 4 HOH HOH . V 7 HOH AAA 31 1131 28 HOH HOH . V 7 HOH AAA 32 1132 142 HOH HOH . V 7 HOH AAA 33 1133 35 HOH HOH . V 7 HOH AAA 34 1134 149 HOH HOH . V 7 HOH AAA 35 1135 51 HOH HOH . V 7 HOH AAA 36 1136 138 HOH HOH . V 7 HOH AAA 37 1137 80 HOH HOH . V 7 HOH AAA 38 1138 66 HOH HOH . V 7 HOH AAA 39 1139 50 HOH HOH . V 7 HOH AAA 40 1140 37 HOH HOH . V 7 HOH AAA 41 1141 6 HOH HOH . V 7 HOH AAA 42 1142 75 HOH HOH . V 7 HOH AAA 43 1143 25 HOH HOH . V 7 HOH AAA 44 1144 21 HOH HOH . V 7 HOH AAA 45 1145 3 HOH HOH . V 7 HOH AAA 46 1146 8 HOH HOH . V 7 HOH AAA 47 1147 45 HOH HOH . V 7 HOH AAA 48 1148 11 HOH HOH . V 7 HOH AAA 49 1149 33 HOH HOH . V 7 HOH AAA 50 1150 23 HOH HOH . V 7 HOH AAA 51 1151 27 HOH HOH . V 7 HOH AAA 52 1152 144 HOH HOH . V 7 HOH AAA 53 1153 76 HOH HOH . V 7 HOH AAA 54 1154 64 HOH HOH . V 7 HOH AAA 55 1155 72 HOH HOH . V 7 HOH AAA 56 1156 5 HOH HOH . V 7 HOH AAA 57 1157 30 HOH HOH . V 7 HOH AAA 58 1158 161 HOH HOH . V 7 HOH AAA 59 1159 143 HOH HOH . V 7 HOH AAA 60 1160 79 HOH HOH . V 7 HOH AAA 61 1161 62 HOH HOH . V 7 HOH AAA 62 1162 135 HOH HOH . V 7 HOH AAA 63 1163 18 HOH HOH . V 7 HOH AAA 64 1164 137 HOH HOH . V 7 HOH AAA 65 1165 36 HOH HOH . V 7 HOH AAA 66 1166 83 HOH HOH . V 7 HOH AAA 67 1167 147 HOH HOH . V 7 HOH AAA 68 1168 160 HOH HOH . V 7 HOH AAA 69 1169 74 HOH HOH . V 7 HOH AAA 70 1170 60 HOH HOH . V 7 HOH AAA 71 1171 13 HOH HOH . V 7 HOH AAA 72 1172 163 HOH HOH . V 7 HOH AAA 73 1173 133 HOH HOH . V 7 HOH AAA 74 1174 77 HOH HOH . V 7 HOH AAA 75 1175 82 HOH HOH . V 7 HOH AAA 76 1176 162 HOH HOH . V 7 HOH AAA 77 1177 49 HOH HOH . V 7 HOH AAA 78 1178 10 HOH HOH . W 7 HOH BBB 1 701 102 HOH HOH . W 7 HOH BBB 2 702 42 HOH HOH . W 7 HOH BBB 3 703 167 HOH HOH . W 7 HOH BBB 4 704 54 HOH HOH . W 7 HOH BBB 5 705 150 HOH HOH . W 7 HOH BBB 6 706 168 HOH HOH . W 7 HOH BBB 7 707 113 HOH HOH . W 7 HOH BBB 8 708 68 HOH HOH . W 7 HOH BBB 9 709 59 HOH HOH . W 7 HOH BBB 10 710 57 HOH HOH . W 7 HOH BBB 11 711 108 HOH HOH . W 7 HOH BBB 12 712 112 HOH HOH . W 7 HOH BBB 13 713 96 HOH HOH . W 7 HOH BBB 14 714 86 HOH HOH . W 7 HOH BBB 15 715 88 HOH HOH . W 7 HOH BBB 16 716 100 HOH HOH . W 7 HOH BBB 17 717 141 HOH HOH . W 7 HOH BBB 18 718 120 HOH HOH . W 7 HOH BBB 19 719 93 HOH HOH . W 7 HOH BBB 20 720 97 HOH HOH . W 7 HOH BBB 21 721 114 HOH HOH . W 7 HOH BBB 22 722 84 HOH HOH . W 7 HOH BBB 23 723 101 HOH HOH . W 7 HOH BBB 24 724 115 HOH HOH . W 7 HOH BBB 25 725 148 HOH HOH . W 7 HOH BBB 26 726 140 HOH HOH . W 7 HOH BBB 27 727 94 HOH HOH . W 7 HOH BBB 28 728 92 HOH HOH . W 7 HOH BBB 29 729 46 HOH HOH . W 7 HOH BBB 30 730 104 HOH HOH . W 7 HOH BBB 31 731 12 HOH HOH . W 7 HOH BBB 32 732 69 HOH HOH . W 7 HOH BBB 33 733 44 HOH HOH . W 7 HOH BBB 34 734 43 HOH HOH . W 7 HOH BBB 35 735 109 HOH HOH . W 7 HOH BBB 36 736 95 HOH HOH . W 7 HOH BBB 37 737 87 HOH HOH . W 7 HOH BBB 38 738 111 HOH HOH . W 7 HOH BBB 39 739 47 HOH HOH . W 7 HOH BBB 40 740 89 HOH HOH . W 7 HOH BBB 41 741 128 HOH HOH . W 7 HOH BBB 42 742 130 HOH HOH . W 7 HOH BBB 43 743 91 HOH HOH . W 7 HOH BBB 44 744 90 HOH HOH . W 7 HOH BBB 45 745 56 HOH HOH . W 7 HOH BBB 46 746 158 HOH HOH . W 7 HOH BBB 47 747 159 HOH HOH . W 7 HOH BBB 48 748 99 HOH HOH . W 7 HOH BBB 49 749 53 HOH HOH . W 7 HOH BBB 50 750 121 HOH HOH . W 7 HOH BBB 51 751 117 HOH HOH . W 7 HOH BBB 52 752 139 HOH HOH . W 7 HOH BBB 53 753 7 HOH HOH . W 7 HOH BBB 54 754 106 HOH HOH . W 7 HOH BBB 55 755 103 HOH HOH . W 7 HOH BBB 56 756 14 HOH HOH . W 7 HOH BBB 57 757 105 HOH HOH . W 7 HOH BBB 58 758 110 HOH HOH . W 7 HOH BBB 59 759 119 HOH HOH . W 7 HOH BBB 60 760 58 HOH HOH . W 7 HOH BBB 61 761 107 HOH HOH . W 7 HOH BBB 62 762 157 HOH HOH . W 7 HOH BBB 63 763 153 HOH HOH . W 7 HOH BBB 64 764 55 HOH HOH . W 7 HOH BBB 65 765 123 HOH HOH . W 7 HOH BBB 66 766 156 HOH HOH . W 7 HOH BBB 67 767 169 HOH HOH . W 7 HOH BBB 68 768 155 HOH HOH . W 7 HOH BBB 69 769 122 HOH HOH . W 7 HOH BBB 70 770 164 HOH HOH . W 7 HOH BBB 71 771 165 HOH HOH . W 7 HOH BBB 72 772 116 HOH HOH . W 7 HOH BBB 73 773 151 HOH HOH . W 7 HOH BBB 74 774 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . T 6 -29.529 -42.491 10.555 1 61.02 0 C1 EDO 610 BBB 1 HETATM 2 O O1 EDO . . . T 6 -28.777 -41.413 11.035 1 61.13 0 O1 EDO 610 BBB 1 HETATM 3 C C2 EDO . . . T 6 -29.061 -43.735 11.184 1 72.17 0 C2 EDO 610 BBB 1 HETATM 4 O O2 EDO . . . T 6 -29.282 -44.842 10.353 1 58.76 0 O2 EDO 610 BBB 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #