data_7PAE # _model_server_result.job_id v4k3WuZNGBY_hJf4rO0y6A _model_server_result.datetime_utc '2024-10-11 01:26:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pae # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7PAE # _exptl.entry_id 7PAE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 603.755 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description deltarasin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7PAE _cell.length_a 55.843 _cell.length_b 55.843 _cell.length_c 116.524 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PAE _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C40 H37 N5 O' _chem_comp.formula_weight 603.755 _chem_comp.id O7T _chem_comp.mon_nstd_flag . _chem_comp.name deltarasin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-phenyl-1-[(1~{S})-2-[4-[1-(phenylmethyl)benzimidazol-2-yl]phenoxy]-1-piperidin-4-yl-ethyl]benzimidazole # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C46 C47 O7T doub 244 n y C46 C45 O7T sing 245 n y C47 C42 O7T sing 246 n y C45 C44 O7T doub 247 n y N40 C35 O7T sing 248 n y N40 C41 O7T doub 249 n y C36 C35 O7T doub 250 n y C36 C37 O7T sing 251 n y C42 C41 O7T sing 252 n n C42 C43 O7T doub 253 n y C35 C34 O7T sing 254 n y C41 N33 O7T sing 255 n y C37 C38 O7T doub 256 n y C44 C43 O7T sing 257 n y C22 C23 O7T doub 258 n y C22 C21 O7T sing 259 n y C23 C24 O7T sing 260 n y C21 C20 O7T doub 261 n y C34 N33 O7T sing 262 n y C34 C39 O7T doub 263 n y N33 C25 O7T sing 264 n n C38 C39 O7T sing 265 n y C24 C19 O7T doub 266 n y C20 C19 O7T sing 267 n y C32 C31 O7T sing 268 n n C32 C27 O7T sing 269 n n C19 C18 O7T sing 270 n n C25 C27 O7T sing 271 n n C25 C1 O7T sing 272 n n C31 N30 O7T sing 273 n n C18 N17 O7T sing 274 n n C27 C28 O7T sing 275 n n C1 O2 O7T sing 276 n n N30 C29 O7T sing 277 n n O2 C3 O7T sing 278 n n N17 C16 O7T sing 279 n y N17 C9 O7T sing 280 n y C3 C4 O7T doub 281 n y C3 C8 O7T sing 282 n y C15 C16 O7T doub 283 n y C15 C14 O7T sing 284 n y C28 C29 O7T sing 285 n n C4 C5 O7T sing 286 n y C8 C7 O7T doub 287 n y C5 C6 O7T doub 288 n y C7 C6 O7T sing 289 n y C16 C11 O7T sing 290 n y C6 C9 O7T sing 291 n n C9 N10 O7T doub 292 n y C14 C13 O7T doub 293 n y C11 N10 O7T sing 294 n y C11 C12 O7T doub 295 n y C13 C12 O7T sing 296 n y C45 H1 O7T sing 297 n n C22 H2 O7T sing 298 n n C44 H3 O7T sing 299 n n C46 H4 O7T sing 300 n n C21 H5 O7T sing 301 n n C23 H6 O7T sing 302 n n C13 H7 O7T sing 303 n n C37 H8 O7T sing 304 n n C14 H9 O7T sing 305 n n C38 H10 O7T sing 306 n n C43 H11 O7T sing 307 n n C47 H12 O7T sing 308 n n C5 H13 O7T sing 309 n n C7 H14 O7T sing 310 n n C20 H15 O7T sing 311 n n C24 H16 O7T sing 312 n n C12 H17 O7T sing 313 n n C36 H18 O7T sing 314 n n C15 H19 O7T sing 315 n n C39 H20 O7T sing 316 n n C4 H21 O7T sing 317 n n C8 H22 O7T sing 318 n n C28 H23 O7T sing 319 n n C28 H24 O7T sing 320 n n C32 H25 O7T sing 321 n n C32 H26 O7T sing 322 n n C29 H27 O7T sing 323 n n C29 H28 O7T sing 324 n n C31 H29 O7T sing 325 n n C31 H30 O7T sing 326 n n C27 H31 O7T sing 327 n n C18 H32 O7T sing 328 n n C18 H33 O7T sing 329 n n C1 H34 O7T sing 330 n n C1 H35 O7T sing 331 n n C25 H36 O7T sing 332 n n N30 H37 O7T sing 333 n n # _atom_sites.entry_id 7PAE _atom_sites.fract_transf_matrix[1][1] 0.017907 _atom_sites.fract_transf_matrix[1][2] 0.010339 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008582 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O7T B 1 201 201 O7T O7T . C 3 ACY B 1 202 202 ACY ACY . D 4 HOH B 1 301 301 HOH HOH . D 4 HOH B 2 302 302 HOH HOH . D 4 HOH B 3 303 303 HOH HOH . D 4 HOH B 4 304 304 HOH HOH . D 4 HOH B 5 305 305 HOH HOH . D 4 HOH B 6 306 306 HOH HOH . D 4 HOH B 7 307 307 HOH HOH . D 4 HOH B 8 308 308 HOH HOH . D 4 HOH B 9 309 309 HOH HOH . D 4 HOH B 10 310 310 HOH HOH . D 4 HOH B 11 311 311 HOH HOH . D 4 HOH B 12 312 312 HOH HOH . D 4 HOH B 13 313 313 HOH HOH . D 4 HOH B 14 314 314 HOH HOH . D 4 HOH B 15 315 315 HOH HOH . D 4 HOH B 16 316 316 HOH HOH . D 4 HOH B 17 317 317 HOH HOH . D 4 HOH B 18 318 318 HOH HOH . D 4 HOH B 19 319 319 HOH HOH . D 4 HOH B 20 320 320 HOH HOH . D 4 HOH B 21 321 321 HOH HOH . D 4 HOH B 22 322 322 HOH HOH . D 4 HOH B 23 323 323 HOH HOH . D 4 HOH B 24 324 324 HOH HOH . D 4 HOH B 25 325 325 HOH HOH . D 4 HOH B 26 326 326 HOH HOH . D 4 HOH B 27 327 327 HOH HOH . D 4 HOH B 28 328 329 HOH HOH . D 4 HOH B 29 329 328 HOH HOH . D 4 HOH B 30 330 330 HOH HOH . D 4 HOH B 31 331 331 HOH HOH . D 4 HOH B 32 332 332 HOH HOH . D 4 HOH B 33 333 333 HOH HOH . D 4 HOH B 34 334 334 HOH HOH . D 4 HOH B 35 335 335 HOH HOH . D 4 HOH B 36 336 336 HOH HOH . D 4 HOH B 37 337 337 HOH HOH . D 4 HOH B 38 338 338 HOH HOH . D 4 HOH B 39 339 339 HOH HOH . D 4 HOH B 40 340 340 HOH HOH . D 4 HOH B 41 341 341 HOH HOH . D 4 HOH B 42 342 342 HOH HOH . D 4 HOH B 43 343 343 HOH HOH . D 4 HOH B 44 344 344 HOH HOH . D 4 HOH B 45 345 345 HOH HOH . D 4 HOH B 46 346 346 HOH HOH . D 4 HOH B 47 347 347 HOH HOH . D 4 HOH B 48 348 348 HOH HOH . D 4 HOH B 49 349 349 HOH HOH . D 4 HOH B 50 350 350 HOH HOH . D 4 HOH B 51 351 351 HOH HOH . D 4 HOH B 52 352 352 HOH HOH . D 4 HOH B 53 353 353 HOH HOH . D 4 HOH B 54 354 354 HOH HOH . D 4 HOH B 55 355 355 HOH HOH . D 4 HOH B 56 356 356 HOH HOH . D 4 HOH B 57 357 357 HOH HOH . D 4 HOH B 58 358 358 HOH HOH . D 4 HOH B 59 359 359 HOH HOH . D 4 HOH B 60 360 360 HOH HOH . D 4 HOH B 61 361 361 HOH HOH . D 4 HOH B 62 362 362 HOH HOH . D 4 HOH B 63 363 363 HOH HOH . D 4 HOH B 64 364 364 HOH HOH . D 4 HOH B 65 365 365 HOH HOH . D 4 HOH B 66 366 366 HOH HOH . D 4 HOH B 67 367 367 HOH HOH . D 4 HOH B 68 368 368 HOH HOH . D 4 HOH B 69 369 369 HOH HOH . D 4 HOH B 70 370 370 HOH HOH . D 4 HOH B 71 371 371 HOH HOH . D 4 HOH B 72 372 372 HOH HOH . D 4 HOH B 73 373 373 HOH HOH . D 4 HOH B 74 374 374 HOH HOH . D 4 HOH B 75 375 375 HOH HOH . D 4 HOH B 76 376 376 HOH HOH . D 4 HOH B 77 377 377 HOH HOH . D 4 HOH B 78 378 378 HOH HOH . D 4 HOH B 79 379 379 HOH HOH . D 4 HOH B 80 380 380 HOH HOH . D 4 HOH B 81 381 381 HOH HOH . D 4 HOH B 82 382 382 HOH HOH . D 4 HOH B 83 383 383 HOH HOH . D 4 HOH B 84 384 384 HOH HOH . D 4 HOH B 85 385 385 HOH HOH . D 4 HOH B 86 386 386 HOH HOH . D 4 HOH B 87 387 387 HOH HOH . D 4 HOH B 88 388 388 HOH HOH . D 4 HOH B 89 389 389 HOH HOH . D 4 HOH B 90 390 390 HOH HOH . D 4 HOH B 91 391 391 HOH HOH . D 4 HOH B 92 392 392 HOH HOH . D 4 HOH B 93 393 393 HOH HOH . D 4 HOH B 94 394 394 HOH HOH . D 4 HOH B 95 395 395 HOH HOH . D 4 HOH B 96 396 396 HOH HOH . D 4 HOH B 97 397 397 HOH HOH . D 4 HOH B 98 398 398 HOH HOH . D 4 HOH B 99 399 399 HOH HOH . D 4 HOH B 100 400 400 HOH HOH . D 4 HOH B 101 401 401 HOH HOH . D 4 HOH B 102 402 402 HOH HOH . D 4 HOH B 103 403 403 HOH HOH . D 4 HOH B 104 404 404 HOH HOH . D 4 HOH B 105 405 405 HOH HOH . D 4 HOH B 106 406 406 HOH HOH . D 4 HOH B 107 407 407 HOH HOH . D 4 HOH B 108 408 408 HOH HOH . D 4 HOH B 109 409 409 HOH HOH . D 4 HOH B 110 410 410 HOH HOH . D 4 HOH B 111 411 411 HOH HOH . D 4 HOH B 112 412 412 HOH HOH . D 4 HOH B 113 413 413 HOH HOH . D 4 HOH B 114 414 414 HOH HOH . D 4 HOH B 115 415 415 HOH HOH . D 4 HOH B 116 416 416 HOH HOH . D 4 HOH B 117 417 417 HOH HOH . D 4 HOH B 118 418 418 HOH HOH . D 4 HOH B 119 419 419 HOH HOH . D 4 HOH B 120 420 420 HOH HOH . D 4 HOH B 121 421 421 HOH HOH . D 4 HOH B 122 422 422 HOH HOH . D 4 HOH B 123 423 423 HOH HOH . D 4 HOH B 124 424 424 HOH HOH . D 4 HOH B 125 425 425 HOH HOH . D 4 HOH B 126 426 426 HOH HOH . D 4 HOH B 127 427 427 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C45 O7T . . . B 2 -19.747 -1.39 -18.368 1 43.87 ? C45 O7T 201 B 1 HETATM 2 C C22 O7T . . . B 2 -22.832 10.158 -16.559 1 39.5 ? C22 O7T 201 B 1 HETATM 3 C C44 O7T . . . B 2 -19.568 -1.078 -17.015 1 45.51 ? C44 O7T 201 B 1 HETATM 4 C C46 O7T . . . B 2 -19.911 -0.358 -19.297 1 41 ? C46 O7T 201 B 1 HETATM 5 C C21 O7T . . . B 2 -24.118 10.531 -16.165 1 39.02 ? C21 O7T 201 B 1 HETATM 6 C C23 O7T . . . B 2 -22.377 8.856 -16.286 1 38.04 ? C23 O7T 201 B 1 HETATM 7 C C13 O7T . . . B 2 -28.024 9.581 -10.588 1 32.26 ? C13 O7T 201 B 1 HETATM 8 C C37 O7T . . . B 2 -19.352 7.257 -17.071 1 37.37 ? C37 O7T 201 B 1 HETATM 9 C C14 O7T . . . B 2 -28.414 9.519 -11.936 1 30.6 ? C14 O7T 201 B 1 HETATM 10 C C38 O7T . . . B 2 -18.807 7.037 -15.802 1 37.07 ? C38 O7T 201 B 1 HETATM 11 C C43 O7T . . . B 2 -19.521 0.261 -16.601 1 43.48 ? C43 O7T 201 B 1 HETATM 12 C C47 O7T . . . B 2 -19.871 0.974 -18.87 1 40.7 ? C47 O7T 201 B 1 HETATM 13 C C5 O7T . . . B 2 -22.116 6.936 -12.578 1 33.79 ? C5 O7T 201 B 1 HETATM 14 C C7 O7T . . . B 2 -23.479 4.93 -12.517 1 29.84 ? C7 O7T 201 B 1 HETATM 15 C C20 O7T . . . B 2 -24.944 9.602 -15.504 1 38.37 ? C20 O7T 201 B 1 HETATM 16 C C24 O7T . . . B 2 -23.213 7.934 -15.636 1 37.36 ? C24 O7T 201 B 1 HETATM 17 C C12 O7T . . . B 2 -26.83 8.958 -10.169 1 34.15 ? C12 O7T 201 B 1 HETATM 18 C C36 O7T . . . B 2 -19.73 6.177 -17.89 1 38.26 ? C36 O7T 201 B 1 HETATM 19 C C15 O7T . . . B 2 -27.632 8.857 -12.905 1 30.53 ? C15 O7T 201 B 1 HETATM 20 C C39 O7T . . . B 2 -18.653 5.724 -15.331 1 37.16 ? C39 O7T 201 B 1 HETATM 21 C C4 O7T . . . B 2 -20.979 6.159 -12.825 1 34.24 ? C4 O7T 201 B 1 HETATM 22 C C8 O7T . . . B 2 -22.336 4.153 -12.786 1 31.89 ? C8 O7T 201 B 1 HETATM 23 C C42 O7T . . . B 2 -19.669 1.304 -17.522 1 39.96 ? C42 O7T 201 B 1 HETATM 24 C C6 O7T . . . B 2 -23.366 6.324 -12.436 1 30.37 ? C6 O7T 201 B 1 HETATM 25 C C19 O7T . . . B 2 -24.507 8.304 -15.229 1 35.87 ? C19 O7T 201 B 1 HETATM 26 C C11 O7T . . . B 2 -26.023 8.314 -11.136 1 33.42 ? C11 O7T 201 B 1 HETATM 27 C C35 O7T . . . B 2 -19.6 4.858 -17.412 1 37.4 ? C35 O7T 201 B 1 HETATM 28 C C16 O7T . . . B 2 -26.434 8.276 -12.474 1 32.05 ? C16 O7T 201 B 1 HETATM 29 C C34 O7T . . . B 2 -19.07 4.654 -16.143 1 37.63 ? C34 O7T 201 B 1 HETATM 30 C C3 O7T . . . B 2 -21.083 4.767 -12.948 1 35.67 ? C3 O7T 201 B 1 HETATM 31 C C9 O7T . . . B 2 -24.532 7.153 -12.18 1 32.76 ? C9 O7T 201 B 1 HETATM 32 C C41 O7T . . . B 2 -19.582 2.718 -17.161 1 38.33 ? C41 O7T 201 B 1 HETATM 33 C C28 O7T . . . B 2 -17.182 1.976 -12.893 1 36.48 ? C28 O7T 201 B 1 HETATM 34 C C32 O7T . . . B 2 -16.39 2.475 -15.282 1 34.59 ? C32 O7T 201 B 1 HETATM 35 C C29 O7T . . . B 2 -15.727 2.143 -12.426 1 38.55 ? C29 O7T 201 B 1 HETATM 36 C C31 O7T . . . B 2 -14.974 2.625 -14.726 1 35.76 ? C31 O7T 201 B 1 HETATM 37 C C27 O7T . . . B 2 -17.451 2.78 -14.191 1 36.98 ? C27 O7T 201 B 1 HETATM 38 C C18 O7T . . . B 2 -25.407 7.312 -14.549 1 32.57 ? C18 O7T 201 B 1 HETATM 39 C C1 O7T . . . B 2 -20.025 2.81 -13.819 1 38.91 ? C1 O7T 201 B 1 HETATM 40 C C25 O7T . . . B 2 -18.836 2.543 -14.76 1 37.18 ? C25 O7T 201 B 1 HETATM 41 N N10 O7T . . . B 2 -24.841 7.62 -10.985 1 33.97 ? N10 O7T 201 B 1 HETATM 42 N N40 O7T . . . B 2 -19.901 3.657 -18.021 1 34.85 ? N40 O7T 201 B 1 HETATM 43 N N17 O7T . . . B 2 -25.454 7.548 -13.118 1 32.42 ? N17 O7T 201 B 1 HETATM 44 N N33 O7T . . . B 2 -19.091 3.275 -16.001 1 38.2 ? N33 O7T 201 B 1 HETATM 45 N N30 O7T . . . B 2 -14.789 1.791 -13.523 1 37.47 ? N30 O7T 201 B 1 HETATM 46 O O2 O7T . . . B 2 -19.872 4.081 -13.17 1 38.97 ? O2 O7T 201 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 46 #