data_7PAV # _model_server_result.job_id b_oPt76fnietsV7B4HDskA _model_server_result.datetime_utc '2024-11-14 04:02:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pav # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 7PAV # _exptl.entry_id 7PAV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 406.329 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}1,~{N}4-bis[2-(trifluoromethyl)pyrimidin-4-yl]cyclohexane-1,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.16 _cell.angle_gamma 90 _cell.entry_id 7PAV _cell.length_a 52.512 _cell.length_b 75.103 _cell.length_c 107.521 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PAV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H16 F6 N6' _chem_comp.formula_weight 406.329 _chem_comp.id 6IO _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}1,~{N}4-bis[2-(trifluoromethyl)pyrimidin-4-yl]cyclohexane-1,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 N17 6IO doub 1 n y C3 C1 6IO sing 2 n y N17 C7 6IO sing 3 n y C1 C5 6IO doub 4 n y C7 C15 6IO sing 5 n n C7 N19 6IO doub 6 n y F25 C15 6IO sing 7 n n C5 N19 6IO sing 8 n y C5 N21 6IO sing 9 n n F23 C15 6IO sing 10 n n C15 F24 6IO sing 11 n n C2 C4 6IO doub 12 n y C2 C6 6IO sing 13 n y N21 C13 6IO sing 14 n n N22 C6 6IO sing 15 n n N22 C14 6IO sing 16 n n C11 C14 6IO sing 17 n n C11 C9 6IO sing 18 n n C4 N18 6IO sing 19 n y C6 N20 6IO doub 20 n y C14 C12 6IO sing 21 n n C9 C13 6IO sing 22 n n C12 C10 6IO sing 23 n n C13 C10 6IO sing 24 n n N18 C8 6IO doub 25 n y N20 C8 6IO sing 26 n y C8 C16 6IO sing 27 n n C16 F26 6IO sing 28 n n C16 F28 6IO sing 29 n n C16 F27 6IO sing 30 n n C1 H1 6IO sing 31 n n C2 H2 6IO sing 32 n n C3 H3 6IO sing 33 n n C9 H4 6IO sing 34 n n C9 H5 6IO sing 35 n n C10 H6 6IO sing 36 n n C10 H7 6IO sing 37 n n C11 H8 6IO sing 38 n n C11 H9 6IO sing 39 n n C12 H10 6IO sing 40 n n C12 H11 6IO sing 41 n n C13 H12 6IO sing 42 n n C14 H13 6IO sing 43 n n C4 H14 6IO sing 44 n n N21 H15 6IO sing 45 n n N22 H16 6IO sing 46 n n # _atom_sites.entry_id 7PAV _atom_sites.fract_transf_matrix[1][1] 0.019043 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001385 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013315 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009325 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6IO B 1 801 1 6IO INH . D 3 HOH A 1 801 44 HOH HOH . D 3 HOH A 2 802 16 HOH HOH . D 3 HOH A 3 803 2 HOH HOH . D 3 HOH A 4 804 40 HOH HOH . D 3 HOH A 5 805 22 HOH HOH . D 3 HOH A 6 806 65 HOH HOH . D 3 HOH A 7 807 38 HOH HOH . D 3 HOH A 8 808 11 HOH HOH . D 3 HOH A 9 809 19 HOH HOH . D 3 HOH A 10 810 53 HOH HOH . D 3 HOH A 11 811 13 HOH HOH . D 3 HOH A 12 812 8 HOH HOH . D 3 HOH A 13 813 28 HOH HOH . D 3 HOH A 14 814 32 HOH HOH . D 3 HOH A 15 815 76 HOH HOH . D 3 HOH A 16 816 9 HOH HOH . D 3 HOH A 17 817 20 HOH HOH . D 3 HOH A 18 818 58 HOH HOH . D 3 HOH A 19 819 12 HOH HOH . D 3 HOH A 20 820 60 HOH HOH . D 3 HOH A 21 821 17 HOH HOH . D 3 HOH A 22 822 41 HOH HOH . D 3 HOH A 23 823 15 HOH HOH . D 3 HOH A 24 824 7 HOH HOH . D 3 HOH A 25 825 5 HOH HOH . D 3 HOH A 26 826 51 HOH HOH . D 3 HOH A 27 827 30 HOH HOH . D 3 HOH A 28 828 27 HOH HOH . D 3 HOH A 29 829 71 HOH HOH . D 3 HOH A 30 830 77 HOH HOH . D 3 HOH A 31 831 37 HOH HOH . D 3 HOH A 32 832 52 HOH HOH . D 3 HOH A 33 833 45 HOH HOH . D 3 HOH A 34 834 73 HOH HOH . D 3 HOH A 35 835 34 HOH HOH . D 3 HOH A 36 836 57 HOH HOH . D 3 HOH A 37 837 4 HOH HOH . D 3 HOH A 38 838 78 HOH HOH . D 3 HOH A 39 839 56 HOH HOH . D 3 HOH A 40 840 49 HOH HOH . D 3 HOH A 41 841 59 HOH HOH . D 3 HOH A 42 842 63 HOH HOH . D 3 HOH A 43 843 69 HOH HOH . D 3 HOH A 44 844 55 HOH HOH . D 3 HOH A 45 845 72 HOH HOH . D 3 HOH A 46 846 31 HOH HOH . D 3 HOH A 47 847 74 HOH HOH . E 3 HOH B 1 901 18 HOH HOH . E 3 HOH B 2 902 61 HOH HOH . E 3 HOH B 3 903 14 HOH HOH . E 3 HOH B 4 904 46 HOH HOH . E 3 HOH B 5 905 39 HOH HOH . E 3 HOH B 6 906 54 HOH HOH . E 3 HOH B 7 907 10 HOH HOH . E 3 HOH B 8 908 47 HOH HOH . E 3 HOH B 9 909 66 HOH HOH . E 3 HOH B 10 910 43 HOH HOH . E 3 HOH B 11 911 23 HOH HOH . E 3 HOH B 12 912 36 HOH HOH . E 3 HOH B 13 913 62 HOH HOH . E 3 HOH B 14 914 35 HOH HOH . E 3 HOH B 15 915 1 HOH HOH . E 3 HOH B 16 916 50 HOH HOH . E 3 HOH B 17 917 33 HOH HOH . E 3 HOH B 18 918 26 HOH HOH . E 3 HOH B 19 919 6 HOH HOH . E 3 HOH B 20 920 48 HOH HOH . E 3 HOH B 21 921 70 HOH HOH . E 3 HOH B 22 922 29 HOH HOH . E 3 HOH B 23 923 21 HOH HOH . E 3 HOH B 24 924 67 HOH HOH . E 3 HOH B 25 925 64 HOH HOH . E 3 HOH B 26 926 24 HOH HOH . E 3 HOH B 27 927 3 HOH HOH . E 3 HOH B 28 928 42 HOH HOH . E 3 HOH B 29 929 25 HOH HOH . E 3 HOH B 30 930 75 HOH HOH . E 3 HOH B 31 931 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6IO . . . C 2 58.047 1.24 96.991 1 64.74 ? C1 6IO 801 B 1 HETATM 2 C C2 6IO . . . C 2 58.25 9.542 98.732 1 66.88 ? C2 6IO 801 B 1 HETATM 3 C C3 6IO . . . C 2 57.635 0.1 96.344 1 64.55 ? C3 6IO 801 B 1 HETATM 4 C C7 6IO . . . C 2 56.053 -0.208 97.902 1 63.55 ? C7 6IO 801 B 1 HETATM 5 C C8 6IO . . . C 2 57.798 9.831 101.329 1 66.86 ? C8 6IO 801 B 1 HETATM 6 C C9 6IO . . . C 2 55.957 3.971 99.694 1 64.88 ? C9 6IO 801 B 1 HETATM 7 C C10 6IO . . . C 2 58.186 4.135 100.755 1 64.53 ? C10 6IO 801 B 1 HETATM 8 C C11 6IO . . . C 2 56.234 5.247 98.917 1 65.12 ? C11 6IO 801 B 1 HETATM 9 C C12 6IO . . . C 2 58.49 5.403 99.981 1 64.79 ? C12 6IO 801 B 1 HETATM 10 C C13 6IO . . . C 2 57.241 3.218 99.999 1 64.62 ? C13 6IO 801 B 1 HETATM 11 C C14 6IO . . . C 2 57.216 6.148 99.636 1 65.28 ? C14 6IO 801 B 1 HETATM 12 C C15 6IO . . . C 2 54.925 -1.001 98.458 1 62.58 ? C15 6IO 801 B 1 HETATM 13 C C16 6IO . . . C 2 57.528 9.923 102.789 1 66.76 ? C16 6IO 801 B 1 HETATM 14 N N18 6IO . . . C 2 58.282 10.904 100.702 1 67 ? N18 6IO 801 B 1 HETATM 15 C C4 6IO . . . C 2 58.491 10.719 99.398 1 67 ? C4 6IO 801 B 1 HETATM 16 C C5 6IO . . . C 2 57.389 1.626 98.136 1 64.56 ? C5 6IO 801 B 1 HETATM 17 C C6 6IO . . . C 2 57.761 8.487 99.468 1 66.71 ? C6 6IO 801 B 1 HETATM 18 N N17 6IO . . . C 2 56.629 -0.655 96.78 1 64.17 ? N17 6IO 801 B 1 HETATM 19 N N19 6IO . . . C 2 56.374 0.885 98.596 1 64.01 ? N19 6IO 801 B 1 HETATM 20 N N20 6IO . . . C 2 57.535 8.644 100.781 1 66.89 ? N20 6IO 801 B 1 HETATM 21 N N21 6IO . . . C 2 57.875 2.81 98.75 1 64.73 ? N21 6IO 801 B 1 HETATM 22 N N22 6IO . . . C 2 57.528 7.275 98.771 1 66.04 ? N22 6IO 801 B 1 HETATM 23 F F23 6IO . . . C 2 53.72 -0.434 98.208 1 62.44 ? F23 6IO 801 B 1 HETATM 24 F F24 6IO . . . C 2 55 -1.153 99.8 1 62.19 ? F24 6IO 801 B 1 HETATM 25 F F25 6IO . . . C 2 54.85 -2.268 97.991 1 62.54 ? F25 6IO 801 B 1 HETATM 26 F F26 6IO . . . C 2 56.208 10.126 103.032 1 66.75 ? F26 6IO 801 B 1 HETATM 27 F F27 6IO . . . C 2 57.847 8.783 103.456 1 66.68 ? F27 6IO 801 B 1 HETATM 28 F F28 6IO . . . C 2 58.204 10.918 103.425 1 66.89 ? F28 6IO 801 B 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #