data_7PAX
#
_model_server_result.job_id            25hfpca9ig-msmZZoPbyvQ 
_model_server_result.datetime_utc      '2024-11-02 21:39:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pax 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    7PAX 
#
_exptl.entry_id    7PAX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              246.092 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7PAX 
_cell.length_a            183.987 
_cell.length_b            183.987 
_cell.length_c            112.537 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PAX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 11_566 x-y+2/3,-y+4/3,-z+4/3 1 0 0 0 -1 0 0 0 -1 0 212.449888 150.049333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 41 A ASP 34 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc2 C O1A IPE . A IPE 401 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc3 D O2A FPS . A FPS 402 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc4 D O3B FPS . A FPS 402 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc5 E MG MG . A MG 403 1_555 F O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc6 E MG MG . A MG 403 1_555 F O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
#
_chem_comp.formula           'C5 H12 O7 P2' 
_chem_comp.formula_weight    246.092 
_chem_comp.id                IPE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ISOPENTENYL PYROPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 IPE sing 224 n n 
C1 C2 IPE sing 225 n n 
C1 H11 IPE sing 226 n n 
C1 H12 IPE sing 227 n n 
O1 PA IPE sing 228 n n 
C2 C3 IPE sing 229 n n 
C2 H21 IPE sing 230 n n 
C2 H22 IPE sing 231 n n 
C3 C4 IPE doub 232 n n 
C3 C5 IPE sing 233 n n 
C4 H41 IPE sing 234 n n 
C4 H42 IPE sing 235 n n 
C5 H51 IPE sing 236 n n 
C5 H52 IPE sing 237 n n 
C5 H53 IPE sing 238 n n 
PA O1A IPE doub 239 n n 
PA O2A IPE sing 240 n n 
PA O3A IPE sing 241 n n 
O2A H2A IPE sing 242 n n 
O3A PB IPE sing 243 n n 
PB O1B IPE sing 244 n n 
PB O2B IPE doub 245 n n 
PB O3B IPE sing 246 n n 
O1B H1B IPE sing 247 n n 
O3B H3B IPE sing 248 n n 
#
_atom_sites.entry_id                     7PAX 
_atom_sites.fract_transf_matrix[1][1]    0.005435 
_atom_sites.fract_transf_matrix[1][2]    0.003138 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006276 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008886 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 IPE A 1 401 1 IPE IPE . 
D 4 FPS A 1 402 1 FPS FPS . 
E 5 MG A 1 403 1 MG MG . 
F 6 HOH A 1 501 50 HOH HOH . 
F 6 HOH A 2 502 30 HOH HOH . 
F 6 HOH A 3 503 23 HOH HOH . 
F 6 HOH A 4 504 56 HOH HOH . 
F 6 HOH A 5 505 52 HOH HOH . 
F 6 HOH A 6 506 69 HOH HOH . 
F 6 HOH A 7 507 72 HOH HOH . 
F 6 HOH A 8 508 62 HOH HOH . 
F 6 HOH A 9 509 13 HOH HOH . 
F 6 HOH A 10 510 11 HOH HOH . 
F 6 HOH A 11 511 68 HOH HOH . 
F 6 HOH A 12 512 2 HOH HOH . 
F 6 HOH A 13 513 43 HOH HOH . 
F 6 HOH A 14 514 14 HOH HOH . 
F 6 HOH A 15 515 44 HOH HOH . 
F 6 HOH A 16 516 55 HOH HOH . 
F 6 HOH A 17 517 61 HOH HOH . 
F 6 HOH A 18 518 18 HOH HOH . 
F 6 HOH A 19 519 45 HOH HOH . 
F 6 HOH A 20 520 24 HOH HOH . 
F 6 HOH A 21 521 28 HOH HOH . 
F 6 HOH A 22 522 4 HOH HOH . 
F 6 HOH A 23 523 10 HOH HOH . 
F 6 HOH A 24 524 5 HOH HOH . 
F 6 HOH A 25 525 27 HOH HOH . 
F 6 HOH A 26 526 19 HOH HOH . 
F 6 HOH A 27 527 67 HOH HOH . 
F 6 HOH A 28 528 25 HOH HOH . 
F 6 HOH A 29 529 48 HOH HOH . 
F 6 HOH A 30 530 38 HOH HOH . 
F 6 HOH A 31 531 51 HOH HOH . 
F 6 HOH A 32 532 37 HOH HOH . 
F 6 HOH A 33 533 36 HOH HOH . 
F 6 HOH A 34 534 8 HOH HOH . 
F 6 HOH A 35 535 20 HOH HOH . 
F 6 HOH A 36 536 64 HOH HOH . 
F 6 HOH A 37 537 71 HOH HOH . 
F 6 HOH A 38 538 65 HOH HOH . 
F 6 HOH A 39 539 31 HOH HOH . 
F 6 HOH A 40 540 76 HOH HOH . 
F 6 HOH A 41 541 22 HOH HOH . 
F 6 HOH A 42 542 74 HOH HOH . 
F 6 HOH A 43 543 39 HOH HOH . 
F 6 HOH A 44 544 58 HOH HOH . 
F 6 HOH A 45 545 57 HOH HOH . 
F 6 HOH A 46 546 42 HOH HOH . 
F 6 HOH A 47 547 29 HOH HOH . 
F 6 HOH A 48 548 73 HOH HOH . 
G 6 HOH B 1 301 78 HOH HOH . 
G 6 HOH B 2 302 59 HOH HOH . 
G 6 HOH B 3 303 32 HOH HOH . 
G 6 HOH B 4 304 6 HOH HOH . 
G 6 HOH B 5 305 3 HOH HOH . 
G 6 HOH B 6 306 60 HOH HOH . 
G 6 HOH B 7 307 49 HOH HOH . 
G 6 HOH B 8 308 1 HOH HOH . 
G 6 HOH B 9 309 54 HOH HOH . 
G 6 HOH B 10 310 15 HOH HOH . 
G 6 HOH B 11 311 77 HOH HOH . 
G 6 HOH B 12 312 47 HOH HOH . 
G 6 HOH B 13 313 41 HOH HOH . 
G 6 HOH B 14 314 46 HOH HOH . 
G 6 HOH B 15 315 9 HOH HOH . 
G 6 HOH B 16 316 12 HOH HOH . 
G 6 HOH B 17 317 40 HOH HOH . 
G 6 HOH B 18 318 16 HOH HOH . 
G 6 HOH B 19 319 63 HOH HOH . 
G 6 HOH B 20 320 33 HOH HOH . 
G 6 HOH B 21 321 17 HOH HOH . 
G 6 HOH B 22 322 26 HOH HOH . 
G 6 HOH B 23 323 75 HOH HOH . 
G 6 HOH B 24 324 66 HOH HOH . 
G 6 HOH B 25 325 7 HOH HOH . 
G 6 HOH B 26 326 34 HOH HOH . 
G 6 HOH B 27 327 53 HOH HOH . 
G 6 HOH B 28 328 79 HOH HOH . 
G 6 HOH B 29 329 70 HOH HOH . 
G 6 HOH B 30 330 21 HOH HOH . 
G 6 HOH B 31 331 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IPE . . . C 3 32.234 115.179 31.018 1 48.43 ? C1 IPE 401 A 1 
HETATM 2 O O1 IPE . . . C 3 31.883 114.527 29.829 1 47.94 ? O1 IPE 401 A 1 
HETATM 3 C C2 IPE . . . C 3 32.373 116.683 30.759 1 53.63 ? C2 IPE 401 A 1 
HETATM 4 C C3 IPE . . . C 3 31.019 117.398 30.696 1 54.83 ? C3 IPE 401 A 1 
HETATM 5 C C4 IPE . . . C 3 30.974 118.716 30.549 1 42.23 ? C4 IPE 401 A 1 
HETATM 6 C C5 IPE . . . C 3 29.724 116.596 30.8 1 48.99 ? C5 IPE 401 A 1 
HETATM 7 P PA IPE . . . C 3 33.034 113.942 28.832 1 49.77 ? PA IPE 401 A 1 
HETATM 8 O O1A IPE . . . C 3 32.438 113.545 27.519 1 43.51 -1 O1A IPE 401 A 1 
HETATM 9 O O2A IPE . . . C 3 34.062 115.01 28.597 1 50.27 ? O2A IPE 401 A 1 
HETATM 10 O O3A IPE . . . C 3 33.679 112.606 29.525 1 44.29 ? O3A IPE 401 A 1 
HETATM 11 P PB IPE . . . C 3 34.345 111.351 28.709 1 49.99 ? PB IPE 401 A 1 
HETATM 12 O O1B IPE . . . C 3 33.308 110.436 28.107 1 50.62 ? O1B IPE 401 A 1 
HETATM 13 O O2B IPE . . . C 3 35.206 111.883 27.592 1 54.68 -1 O2B IPE 401 A 1 
HETATM 14 O O3B IPE . . . C 3 35.173 110.593 29.716 1 54.87 -1 O3B IPE 401 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#