data_7PAX
#
_model_server_result.job_id            NwKOgng7Q9TVXGzOT9WiUA 
_model_server_result.datetime_utc      '2024-11-02 21:20:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pax 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    7PAX 
#
_exptl.entry_id    7PAX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.392 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL] TRIHYDROGEN THIODIPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7PAX 
_cell.length_a            183.987 
_cell.length_b            183.987 
_cell.length_c            112.537 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PAX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 11_566 x-y+2/3,-y+4/3,-z+4/3 1 0 0 0 -1 0 0 0 -1 0 212.449888 150.049333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 41 A ASP 34 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc2 C O1A IPE . A IPE 401 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc3 D O2A FPS . A FPS 402 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc4 D O3B FPS . A FPS 402 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc5 E MG MG . A MG 403 1_555 F O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc6 E MG MG . A MG 403 1_555 F O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
#
_chem_comp.formula           'C15 H28 O6 P2 S' 
_chem_comp.formula_weight    398.392 
_chem_comp.id                FPS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL] TRIHYDROGEN THIODIPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'FARNESYL THIOPYROPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 S1 FPS sing 83 n n 
C1 C2 FPS sing 84 n n 
C1 H11 FPS sing 85 n n 
C1 H12A FPS sing 86 n n 
S1 PA FPS sing 87 n n 
C2 C3 FPS doub 88 e n 
C2 H2 FPS sing 89 n n 
C3 C4 FPS sing 90 n n 
C3 C5 FPS sing 91 n n 
C4 H41 FPS sing 92 n n 
C4 H42 FPS sing 93 n n 
C4 H43 FPS sing 94 n n 
C5 C6 FPS sing 95 n n 
C5 H51 FPS sing 96 n n 
C5 H52 FPS sing 97 n n 
C6 C7 FPS sing 98 n n 
C6 H61 FPS sing 99 n n 
C6 H62 FPS sing 100 n n 
C7 C8 FPS doub 101 e n 
C7 H7 FPS sing 102 n n 
C8 C10 FPS sing 103 n n 
C8 C9 FPS sing 104 n n 
C10 C11 FPS sing 105 n n 
C10 H101 FPS sing 106 n n 
C10 H102 FPS sing 107 n n 
C9 H91 FPS sing 108 n n 
C9 H92 FPS sing 109 n n 
C9 H93 FPS sing 110 n n 
C11 C12 FPS sing 111 n n 
C11 H111 FPS sing 112 n n 
C11 H112 FPS sing 113 n n 
C12 C13 FPS doub 114 n n 
C12 H12 FPS sing 115 n n 
C13 C14 FPS sing 116 n n 
C13 C15 FPS sing 117 n n 
C14 H141 FPS sing 118 n n 
C14 H142 FPS sing 119 n n 
C14 H143 FPS sing 120 n n 
C15 H151 FPS sing 121 n n 
C15 H152 FPS sing 122 n n 
C15 H153 FPS sing 123 n n 
PA O1A FPS doub 124 n n 
PA O2A FPS sing 125 n n 
PA O3A FPS sing 126 n n 
O2A H2A FPS sing 127 n n 
O3A PB FPS sing 128 n n 
PB O1B FPS sing 129 n n 
PB O2B FPS doub 130 n n 
PB O3B FPS sing 131 n n 
O1B H1B FPS sing 132 n n 
O3B H3B FPS sing 133 n n 
#
_atom_sites.entry_id                     7PAX 
_atom_sites.fract_transf_matrix[1][1]    0.005435 
_atom_sites.fract_transf_matrix[1][2]    0.003138 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006276 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008886 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 IPE A 1 401 1 IPE IPE . 
D 4 FPS A 1 402 1 FPS FPS . 
E 5 MG A 1 403 1 MG MG . 
F 6 HOH A 1 501 50 HOH HOH . 
F 6 HOH A 2 502 30 HOH HOH . 
F 6 HOH A 3 503 23 HOH HOH . 
F 6 HOH A 4 504 56 HOH HOH . 
F 6 HOH A 5 505 52 HOH HOH . 
F 6 HOH A 6 506 69 HOH HOH . 
F 6 HOH A 7 507 72 HOH HOH . 
F 6 HOH A 8 508 62 HOH HOH . 
F 6 HOH A 9 509 13 HOH HOH . 
F 6 HOH A 10 510 11 HOH HOH . 
F 6 HOH A 11 511 68 HOH HOH . 
F 6 HOH A 12 512 2 HOH HOH . 
F 6 HOH A 13 513 43 HOH HOH . 
F 6 HOH A 14 514 14 HOH HOH . 
F 6 HOH A 15 515 44 HOH HOH . 
F 6 HOH A 16 516 55 HOH HOH . 
F 6 HOH A 17 517 61 HOH HOH . 
F 6 HOH A 18 518 18 HOH HOH . 
F 6 HOH A 19 519 45 HOH HOH . 
F 6 HOH A 20 520 24 HOH HOH . 
F 6 HOH A 21 521 28 HOH HOH . 
F 6 HOH A 22 522 4 HOH HOH . 
F 6 HOH A 23 523 10 HOH HOH . 
F 6 HOH A 24 524 5 HOH HOH . 
F 6 HOH A 25 525 27 HOH HOH . 
F 6 HOH A 26 526 19 HOH HOH . 
F 6 HOH A 27 527 67 HOH HOH . 
F 6 HOH A 28 528 25 HOH HOH . 
F 6 HOH A 29 529 48 HOH HOH . 
F 6 HOH A 30 530 38 HOH HOH . 
F 6 HOH A 31 531 51 HOH HOH . 
F 6 HOH A 32 532 37 HOH HOH . 
F 6 HOH A 33 533 36 HOH HOH . 
F 6 HOH A 34 534 8 HOH HOH . 
F 6 HOH A 35 535 20 HOH HOH . 
F 6 HOH A 36 536 64 HOH HOH . 
F 6 HOH A 37 537 71 HOH HOH . 
F 6 HOH A 38 538 65 HOH HOH . 
F 6 HOH A 39 539 31 HOH HOH . 
F 6 HOH A 40 540 76 HOH HOH . 
F 6 HOH A 41 541 22 HOH HOH . 
F 6 HOH A 42 542 74 HOH HOH . 
F 6 HOH A 43 543 39 HOH HOH . 
F 6 HOH A 44 544 58 HOH HOH . 
F 6 HOH A 45 545 57 HOH HOH . 
F 6 HOH A 46 546 42 HOH HOH . 
F 6 HOH A 47 547 29 HOH HOH . 
F 6 HOH A 48 548 73 HOH HOH . 
G 6 HOH B 1 301 78 HOH HOH . 
G 6 HOH B 2 302 59 HOH HOH . 
G 6 HOH B 3 303 32 HOH HOH . 
G 6 HOH B 4 304 6 HOH HOH . 
G 6 HOH B 5 305 3 HOH HOH . 
G 6 HOH B 6 306 60 HOH HOH . 
G 6 HOH B 7 307 49 HOH HOH . 
G 6 HOH B 8 308 1 HOH HOH . 
G 6 HOH B 9 309 54 HOH HOH . 
G 6 HOH B 10 310 15 HOH HOH . 
G 6 HOH B 11 311 77 HOH HOH . 
G 6 HOH B 12 312 47 HOH HOH . 
G 6 HOH B 13 313 41 HOH HOH . 
G 6 HOH B 14 314 46 HOH HOH . 
G 6 HOH B 15 315 9 HOH HOH . 
G 6 HOH B 16 316 12 HOH HOH . 
G 6 HOH B 17 317 40 HOH HOH . 
G 6 HOH B 18 318 16 HOH HOH . 
G 6 HOH B 19 319 63 HOH HOH . 
G 6 HOH B 20 320 33 HOH HOH . 
G 6 HOH B 21 321 17 HOH HOH . 
G 6 HOH B 22 322 26 HOH HOH . 
G 6 HOH B 23 323 75 HOH HOH . 
G 6 HOH B 24 324 66 HOH HOH . 
G 6 HOH B 25 325 7 HOH HOH . 
G 6 HOH B 26 326 34 HOH HOH . 
G 6 HOH B 27 327 53 HOH HOH . 
G 6 HOH B 28 328 79 HOH HOH . 
G 6 HOH B 29 329 70 HOH HOH . 
G 6 HOH B 30 330 21 HOH HOH . 
G 6 HOH B 31 331 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 FPS . . . D 4 29.006 117.247 27.345 1 48.31 ? C1 FPS 402 A 1 
HETATM 2 S S1 FPS . . . D 4 28.165 116.348 26.012 1 53.29 ? S1 FPS 402 A 1 
HETATM 3 C C2 FPS . . . D 4 28.686 118.74 27.29 1 55.22 ? C2 FPS 402 A 1 
HETATM 4 C C3 FPS . . . D 4 29.602 119.621 26.946 1 58.46 ? C3 FPS 402 A 1 
HETATM 5 C C4 FPS . . . D 4 31.013 119.168 26.577 1 59.47 ? C4 FPS 402 A 1 
HETATM 6 C C5 FPS . . . D 4 29.237 121.106 26.903 1 68.37 ? C5 FPS 402 A 1 
HETATM 7 C C6 FPS . . . D 4 27.999 121.346 27.769 1 73.86 ? C6 FPS 402 A 1 
HETATM 8 C C7 FPS . . . D 4 26.963 122.127 26.968 1 83.82 ? C7 FPS 402 A 1 
HETATM 9 C C8 FPS . . . D 4 26.423 123.238 27.43 1 87.18 ? C8 FPS 402 A 1 
HETATM 10 C C10 FPS . . . D 4 26.795 123.826 28.786 1 88.06 ? C10 FPS 402 A 1 
HETATM 11 C C9 FPS . . . D 4 25.395 123.963 26.581 1 91.27 ? C9 FPS 402 A 1 
HETATM 12 C C11 FPS . . . D 4 27.687 125.052 28.575 1 86.17 ? C11 FPS 402 A 1 
HETATM 13 C C12 FPS . . . D 4 26.896 126.363 28.558 1 75.89 ? C12 FPS 402 A 1 
HETATM 14 C C13 FPS . . . D 4 26.627 127.03 29.663 1 71.47 ? C13 FPS 402 A 1 
HETATM 15 C C14 FPS . . . D 4 25.849 128.335 29.589 1 69.45 ? C14 FPS 402 A 1 
HETATM 16 C C15 FPS . . . D 4 27.076 126.536 31.035 1 75.44 ? C15 FPS 402 A 1 
HETATM 17 P PA FPS . . . D 4 29.649 115.807 24.609 1 60.34 ? PA FPS 402 A 1 
HETATM 18 O O1A FPS . . . D 4 30.182 117.071 23.966 1 54.63 ? O1A FPS 402 A 1 
HETATM 19 O O2A FPS . . . D 4 30.752 115.094 25.354 1 50.02 -1 O2A FPS 402 A 1 
HETATM 20 O O3A FPS . . . D 4 28.954 114.871 23.465 1 58.29 ? O3A FPS 402 A 1 
HETATM 21 P PB FPS . . . D 4 29.272 113.282 23.265 1 60.59 ? PB FPS 402 A 1 
HETATM 22 O O1B FPS . . . D 4 30.613 113.144 22.56 1 66.78 -1 O1B FPS 402 A 1 
HETATM 23 O O2B FPS . . . D 4 28.187 112.706 22.39 1 51.7 ? O2B FPS 402 A 1 
HETATM 24 O O3B FPS . . . D 4 29.336 112.596 24.616 1 50.05 -1 O3B FPS 402 A 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           24 
#