data_7PAY
#
_model_server_result.job_id            CrIm0yXJF1S_nrYjD2uzuA 
_model_server_result.datetime_utc      '2024-11-27 22:11:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pay 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":403}' 
#
_entry.id    7PAY 
#
_exptl.entry_id    7PAY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              466.509 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'phosphonooxy-[(10E)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenyl]sulfanyl-phosphinic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7PAY 
_cell.length_a            184.406 
_cell.length_b            184.406 
_cell.length_c            112.47 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PAY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 212.55 150.124 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 41 A ASP 34 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc2 D MG MG . A MG 402 1_555 E O2B GGS . A GGS 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc3 D MG MG . A MG 402 1_555 E O2A GGS . A GGS 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc4 D MG MG . A MG 402 1_555 F O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc5 D MG MG . A MG 402 1_555 F O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc6 D MG MG . A MG 402 1_555 F O HOH . A HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
#
_chem_comp.formula           'C20 H36 O6 P2 S' 
_chem_comp.formula_weight    466.509 
_chem_comp.id                GGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'phosphonooxy-[(10E)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenyl]sulfanyl-phosphinic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 S1 GGS sing 83 n n 
C1 C2 GGS sing 84 n n 
S1 PA GGS sing 85 n n 
C2 C3 GGS doub 86 n n 
C3 C4 GGS sing 87 n n 
C3 C5 GGS sing 88 z n 
C5 C6 GGS sing 89 n n 
C6 C7 GGS sing 90 n n 
C7 C8 GGS doub 91 n n 
C8 C9 GGS sing 92 n n 
C8 C10 GGS sing 93 n n 
C9 C11 GGS sing 94 n n 
PA O1A GGS doub 95 n n 
PA O2A GGS sing 96 n n 
PA O3A GGS sing 97 n n 
PB O1B GGS doub 98 n n 
PB O2B GGS sing 99 n n 
PB O3A GGS sing 100 n n 
PB O3B GGS sing 101 e n 
C11 C12 GGS sing 102 n n 
C12 C13 GGS doub 103 n n 
C13 C14 GGS sing 104 n n 
C13 C15 GGS sing 105 n n 
C15 C16 GGS sing 106 n n 
C16 C17 GGS sing 107 n n 
C17 C18 GGS doub 108 n n 
C18 C19 GGS sing 109 n n 
C18 C20 GGS sing 110 n n 
C1 H1 GGS sing 111 n n 
C1 H1A GGS sing 112 n n 
C2 H2 GGS sing 113 n n 
C4 H4 GGS sing 114 n n 
C4 H4A GGS sing 115 n n 
C4 H4B GGS sing 116 n n 
C5 H5 GGS sing 117 n n 
C5 H5A GGS sing 118 n n 
C6 H6 GGS sing 119 n n 
C6 H6A GGS sing 120 n n 
C7 H7 GGS sing 121 e n 
C9 H9 GGS sing 122 n n 
C9 H9A GGS sing 123 n n 
C10 H10 GGS sing 124 n n 
C10 H10A GGS sing 125 n n 
C10 H10B GGS sing 126 n n 
C11 H11 GGS sing 127 n n 
C11 H11A GGS sing 128 n n 
C12 H12 GGS sing 129 n n 
C14 H14 GGS sing 130 n n 
C14 H14A GGS sing 131 n n 
C14 H14B GGS sing 132 n n 
C15 H15 GGS sing 133 n n 
C15 H15A GGS sing 134 n n 
C16 H16 GGS sing 135 n n 
C16 H16A GGS sing 136 n n 
C17 H17 GGS sing 137 n n 
C19 H19 GGS sing 138 n n 
C19 H19A GGS sing 139 n n 
C19 H19B GGS sing 140 n n 
C20 H20 GGS sing 141 n n 
C20 H20A GGS sing 142 n n 
C20 H20B GGS sing 143 n n 
O2A HO2A GGS sing 144 n n 
O2B HO2B GGS sing 145 n n 
O3B HO3B GGS sing 146 n n 
#
_atom_sites.entry_id                     7PAY 
_atom_sites.fract_transf_matrix[1][1]    0.005423 
_atom_sites.fract_transf_matrix[1][2]    0.003131 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006262 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008891 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SO4 A 1 401 1 SO4 SO4 . 
D 4 MG A 1 402 1 MG MG . 
E 5 GGS A 1 403 1 GGS GGS . 
F 6 HOH A 1 501 40 HOH HOH . 
F 6 HOH A 2 502 71 HOH HOH . 
F 6 HOH A 3 503 66 HOH HOH . 
F 6 HOH A 4 504 43 HOH HOH . 
F 6 HOH A 5 505 29 HOH HOH . 
F 6 HOH A 6 506 36 HOH HOH . 
F 6 HOH A 7 507 27 HOH HOH . 
F 6 HOH A 8 508 32 HOH HOH . 
F 6 HOH A 9 509 65 HOH HOH . 
F 6 HOH A 10 510 14 HOH HOH . 
F 6 HOH A 11 511 15 HOH HOH . 
F 6 HOH A 12 512 70 HOH HOH . 
F 6 HOH A 13 513 45 HOH HOH . 
F 6 HOH A 14 514 12 HOH HOH . 
F 6 HOH A 15 515 56 HOH HOH . 
F 6 HOH A 16 516 4 HOH HOH . 
F 6 HOH A 17 517 23 HOH HOH . 
F 6 HOH A 18 518 38 HOH HOH . 
F 6 HOH A 19 519 49 HOH HOH . 
F 6 HOH A 20 520 48 HOH HOH . 
F 6 HOH A 21 521 5 HOH HOH . 
F 6 HOH A 22 522 24 HOH HOH . 
F 6 HOH A 23 523 17 HOH HOH . 
F 6 HOH A 24 524 37 HOH HOH . 
F 6 HOH A 25 525 16 HOH HOH . 
F 6 HOH A 26 526 63 HOH HOH . 
F 6 HOH A 27 527 44 HOH HOH . 
F 6 HOH A 28 528 28 HOH HOH . 
F 6 HOH A 29 529 50 HOH HOH . 
F 6 HOH A 30 530 3 HOH HOH . 
F 6 HOH A 31 531 30 HOH HOH . 
F 6 HOH A 32 532 2 HOH HOH . 
F 6 HOH A 33 533 75 HOH HOH . 
F 6 HOH A 34 534 10 HOH HOH . 
F 6 HOH A 35 535 62 HOH HOH . 
F 6 HOH A 36 536 54 HOH HOH . 
F 6 HOH A 37 537 18 HOH HOH . 
F 6 HOH A 38 538 26 HOH HOH . 
F 6 HOH A 39 539 13 HOH HOH . 
F 6 HOH A 40 540 25 HOH HOH . 
F 6 HOH A 41 541 42 HOH HOH . 
F 6 HOH A 42 542 51 HOH HOH . 
F 6 HOH A 43 543 35 HOH HOH . 
F 6 HOH A 44 544 79 HOH HOH . 
F 6 HOH A 45 545 34 HOH HOH . 
F 6 HOH A 46 546 67 HOH HOH . 
F 6 HOH A 47 547 59 HOH HOH . 
F 6 HOH A 48 548 78 HOH HOH . 
F 6 HOH A 49 549 76 HOH HOH . 
F 6 HOH A 50 550 22 HOH HOH . 
F 6 HOH A 51 551 74 HOH HOH . 
F 6 HOH A 52 552 72 HOH HOH . 
F 6 HOH A 53 553 58 HOH HOH . 
F 6 HOH A 54 554 73 HOH HOH . 
F 6 HOH A 55 555 57 HOH HOH . 
F 6 HOH A 56 556 55 HOH HOH . 
F 6 HOH A 57 557 20 HOH HOH . 
F 6 HOH A 58 558 69 HOH HOH . 
F 6 HOH A 59 559 80 HOH HOH . 
G 6 HOH B 1 301 47 HOH HOH . 
G 6 HOH B 2 302 53 HOH HOH . 
G 6 HOH B 3 303 6 HOH HOH . 
G 6 HOH B 4 304 19 HOH HOH . 
G 6 HOH B 5 305 1 HOH HOH . 
G 6 HOH B 6 306 60 HOH HOH . 
G 6 HOH B 7 307 8 HOH HOH . 
G 6 HOH B 8 308 46 HOH HOH . 
G 6 HOH B 9 309 33 HOH HOH . 
G 6 HOH B 10 310 11 HOH HOH . 
G 6 HOH B 11 311 52 HOH HOH . 
G 6 HOH B 12 312 21 HOH HOH . 
G 6 HOH B 13 313 7 HOH HOH . 
G 6 HOH B 14 314 9 HOH HOH . 
G 6 HOH B 15 315 68 HOH HOH . 
G 6 HOH B 16 316 41 HOH HOH . 
G 6 HOH B 17 317 31 HOH HOH . 
G 6 HOH B 18 318 39 HOH HOH . 
G 6 HOH B 19 319 61 HOH HOH . 
G 6 HOH B 20 320 77 HOH HOH . 
G 6 HOH B 21 321 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GGS . . . E 5 29.244 116.876 27.062 1 56.41 ? C1 GGS 403 A 1 
HETATM 2 S S1 GGS . . . E 5 28.179 116.558 25.633 1 49.84 ? S1 GGS 403 A 1 
HETATM 3 C C2 GGS . . . E 5 28.976 118.315 27.449 1 73.63 ? C2 GGS 403 A 1 
HETATM 4 C C3 GGS . . . E 5 29.652 119.292 26.904 1 67.29 ? C3 GGS 403 A 1 
HETATM 5 C C4 GGS . . . E 5 30.748 119.013 25.886 1 72.55 ? C4 GGS 403 A 1 
HETATM 6 C C5 GGS . . . E 5 29.321 120.709 27.315 1 70.06 ? C5 GGS 403 A 1 
HETATM 7 C C6 GGS . . . E 5 28.031 120.699 28.136 1 60.7 ? C6 GGS 403 A 1 
HETATM 8 C C7 GGS . . . E 5 26.888 121.127 27.225 1 64.59 ? C7 GGS 403 A 1 
HETATM 9 C C8 GGS . . . E 5 26.08 122.113 27.555 1 67.32 ? C8 GGS 403 A 1 
HETATM 10 C C9 GGS . . . E 5 26.256 122.865 28.869 1 69.96 ? C9 GGS 403 A 1 
HETATM 11 P PA GGS . . . E 5 29.522 115.904 24.157 1 52.83 ? PA GGS 403 A 1 
HETATM 12 P PB GGS . . . E 5 29.131 113.37 22.813 1 50.11 ? PB GGS 403 A 1 
HETATM 13 C C10 GGS . . . E 5 24.95 122.501 26.615 1 67.78 ? C10 GGS 403 A 1 
HETATM 14 C C11 GGS . . . E 5 24.974 123.637 29.187 1 61.39 ? C11 GGS 403 A 1 
HETATM 15 C C12 GGS . . . E 5 25.161 125.083 28.736 1 66.83 ? C12 GGS 403 A 1 
HETATM 16 C C13 GGS . . . E 5 25.532 126.023 29.578 1 67.09 ? C13 GGS 403 A 1 
HETATM 17 C C14 GGS . . . E 5 25.781 125.708 31.051 1 64.08 ? C14 GGS 403 A 1 
HETATM 18 C C15 GGS . . . E 5 25.704 127.444 29.063 1 62.68 ? C15 GGS 403 A 1 
HETATM 19 C C16 GGS . . . E 5 27.177 127.817 29.187 1 66.37 ? C16 GGS 403 A 1 
HETATM 20 C C17 GGS . . . E 5 27.991 127.104 28.107 1 64.5 ? C17 GGS 403 A 1 
HETATM 21 C C18 GGS . . . E 5 29.173 126.615 28.429 1 61.03 ? C18 GGS 403 A 1 
HETATM 22 C C19 GGS . . . E 5 29.678 126.767 29.862 1 47.9 ? C19 GGS 403 A 1 
HETATM 23 O O1A GGS . . . E 5 30.051 117.065 23.351 1 59.15 ? O1A GGS 403 A 1 
HETATM 24 O O1B GGS . . . E 5 28.001 112.741 22.031 1 53.09 ? O1B GGS 403 A 1 
HETATM 25 C C20 GGS . . . E 5 30.031 125.893 27.391 1 56.41 ? C20 GGS 403 A 1 
HETATM 26 O O2A GGS . . . E 5 30.645 115.209 24.868 1 45.97 -1 O2A GGS 403 A 1 
HETATM 27 O O2B GGS . . . E 5 29.41 112.605 24.088 1 43.5 -1 O2B GGS 403 A 1 
HETATM 28 O O3A GGS . . . E 5 28.679 114.896 23.186 1 49.38 ? O3A GGS 403 A 1 
HETATM 29 O O3B GGS . . . E 5 30.383 113.418 21.967 1 57.41 -1 O3B GGS 403 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           29 
#