data_7PB3 # _model_server_result.job_id K5x5E9Scu9m4gDkAwU_Hyg _model_server_result.datetime_utc '2024-10-19 09:33:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pb3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 7PB3 # _exptl.entry_id 7PB3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 110.091 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PYRROLE-2-CARBOXYLATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PB3 _cell.length_a 109.041 _cell.length_b 109.041 _cell.length_c 105.163 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PB3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1,4 B,D 1 2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -x,-y,z-1/2 -1 0 0 0 -1 0 0 0 1 0 0 -52.5815 3 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -52.5815 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C5 H4 N O2 -1' _chem_comp.formula_weight 110.091 _chem_comp.id PYC _chem_comp.mon_nstd_flag . _chem_comp.name PYRROLE-2-CARBOXYLATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O7 C1 PYC doub 275 n n O8 C1 PYC sing 276 n n C1 C2 PYC sing 277 n n C2 C3 PYC doub 278 n y C2 N6 PYC sing 279 n y C3 C4 PYC sing 280 n y C3 H31 PYC sing 281 n n C4 C5 PYC doub 282 n y C4 H41 PYC sing 283 n n C5 N6 PYC sing 284 n y C5 H61 PYC sing 285 n n N6 HN6 PYC sing 286 n n # _atom_sites.entry_id 7PB3 _atom_sites.fract_transf_matrix[1][1] 0.009171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PYC AAA 1 401 401 PYC PYC . D 2 PYC BBB 1 401 401 PYC PYC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O7 PYC . . . D 2 0.058 -27.269 31.417 1 154.19 0 O7 PYC 401 BBB 1 HETATM 2 O O8 PYC . . . D 2 1.631 -26.43 32.616 1 154.43 0 O8 PYC 401 BBB 1 HETATM 3 C C1 PYC . . . D 2 1.178 -26.838 31.567 1 154.73 0 C1 PYC 401 BBB 1 HETATM 4 C C2 PYC . . . D 2 2.038 -26.819 30.409 1 156.28 0 C2 PYC 401 BBB 1 HETATM 5 C C3 PYC . . . D 2 1.79 -27.034 29.077 1 158.32 0 C3 PYC 401 BBB 1 HETATM 6 C C4 PYC . . . D 2 3 -26.899 28.396 1 159.14 0 C4 PYC 401 BBB 1 HETATM 7 C C5 PYC . . . D 2 3.961 -26.606 29.324 1 157.62 0 C5 PYC 401 BBB 1 HETATM 8 N N6 PYC . . . D 2 3.376 -26.564 30.542 1 156.12 0 N6 PYC 401 BBB 1 HETATM 9 H H31 PYC . . . D 2 0.955 -27.237 28.691 1 158.62 0 H31 PYC 401 BBB 1 HETATM 10 H H41 PYC . . . D 2 3.131 -26.99 27.466 1 158.81 0 H41 PYC 401 BBB 1 HETATM 11 H H61 PYC . . . D 2 4.876 -26.461 29.151 1 157.35 0 H61 PYC 401 BBB 1 HETATM 12 H HN6 PYC . . . D 2 3.784 -26.393 31.3 1 156.06 0 HN6 PYC 401 BBB 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #