data_7PBE # _model_server_result.job_id o_1_rfUTZynIsXw03aPF6g _model_server_result.datetime_utc '2024-10-19 08:40:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pbe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":301}' # _entry.id 7PBE # _exptl.entry_id 7PBE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.75 _cell.angle_gamma 90 _cell.entry_id 7PBE _cell.length_a 229.24 _cell.length_b 46.45 _cell.length_c 184.72 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PBE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? pentameric 5 author_defined_assembly 1 ? pentameric 5 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,K,L,M,N 1 1 F,G,H,I,J,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? disulf ? disulf4 D SG CYS 23 D CYS 23 1_555 D SG CYS 88 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 D SG CYS 132 D CYS 132 1_555 D SG CYS 182 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf6 D SG CYS 157 D CYS 157 1_555 E SG CYS 170 E CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 E SG CYS 23 E CYS 23 1_555 E SG CYS 92 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 E SG CYS 144 E CYS 144 1_555 E SG CYS 209 E CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf9 F SG CYS 101 F CYS 101 1_555 F SG CYS 164 F CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf10 F SG CYS 203 F CYS 203 1_555 F SG CYS 259 F CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf11 G SG CYS 26 G CYS 25 1_555 G SG CYS 81 G CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? disulf ? disulf12 I SG CYS 23 I CYS 23 1_555 I SG CYS 88 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf13 I SG CYS 132 I CYS 132 1_555 I SG CYS 182 I CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf14 I SG CYS 157 I CYS 157 1_555 J SG CYS 170 J CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf15 J SG CYS 23 J CYS 23 1_555 J SG CYS 92 J CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf16 J SG CYS 144 J CYS 144 1_555 J SG CYS 209 J CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 235 n n C1 C2 PEG sing 236 n n C1 H11 PEG sing 237 n n C1 H12 PEG sing 238 n n O1 HO1 PEG sing 239 n n C2 O2 PEG sing 240 n n C2 H21 PEG sing 241 n n C2 H22 PEG sing 242 n n O2 C3 PEG sing 243 n n C3 C4 PEG sing 244 n n C3 H31 PEG sing 245 n n C3 H32 PEG sing 246 n n C4 O4 PEG sing 247 n n C4 H41 PEG sing 248 n n C4 H42 PEG sing 249 n n O4 HO4 PEG sing 250 n n # _atom_sites.entry_id 7PBE _atom_sites.fract_transf_matrix[1][1] 0.004362 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000516 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 PEG A 1 301 1 PEG PEG . L 7 SO4 A 1 302 3 SO4 SO4 . M 7 SO4 B 1 101 5 SO4 SO4 . N 7 SO4 E 1 301 2 SO4 SO4 . O 6 PEG F 1 301 2 PEG PEG . P 7 SO4 F 1 302 1 SO4 SO4 . Q 7 SO4 I 1 301 4 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . O 6 -50.214 49.097 8.259 1 108.68 ? C1 PEG 301 F 1 HETATM 2 O O1 PEG . . . O 6 -49.559 49.838 7.248 1 97.06 ? O1 PEG 301 F 1 HETATM 3 C C2 PEG . . . O 6 -49.729 49.456 9.631 1 115.04 ? C2 PEG 301 F 1 HETATM 4 O O2 PEG . . . O 6 -50.496 50.541 10.148 1 123.4 ? O2 PEG 301 F 1 HETATM 5 C C3 PEG . . . O 6 -49.793 51.304 11.127 1 119.66 ? C3 PEG 301 F 1 HETATM 6 C C4 PEG . . . O 6 -50.563 52.547 11.455 1 112.56 ? C4 PEG 301 F 1 HETATM 7 O O4 PEG . . . O 6 -50.224 53.627 10.607 1 101.67 ? O4 PEG 301 F 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #