data_7PBI
#
_model_server_result.job_id            OhgSQKmS73B4v-j3KGVbPw 
_model_server_result.datetime_utc      '2024-11-16 11:39:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pbi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":601}' 
#
_entry.id    7PBI 
#
_exptl.entry_id    7PBI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7PBI 
_cell.length_a            67.586 
_cell.length_b            228.209 
_cell.length_c            300.824 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PBI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K,L 1 1 
C,D,M,N,O,P 2 1 
E,F,Q,R,S,T 3 1 
G,H,U,V 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 395 A HIS 395 1_555 I C8M FAD . A FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 B NE2 HIS 395 B HIS 395 1_555 K C8M FAD . B FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale3 C NE2 HIS 395 C HIS 395 1_555 M C8M FAD . C FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale4 D NE2 HIS 395 D HIS 395 1_555 O C8M FAD . D FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale5 E NE2 HIS 395 E HIS 395 1_555 Q C8M FAD . E FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale6 F NE2 HIS 395 F HIS 395 1_555 S C8M FAD . F FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale7 G NE2 HIS 395 G HIS 395 1_555 U C8M FAD . G FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? 
covale ? covale8 H NE2 HIS 395 H HIS 395 1_555 V C8M FAD . H FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     7PBI 
_atom_sites.fract_transf_matrix[1][1]    0.014796 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004382 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003324 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 FAD A 1 601 601 FAD FAD . 
J 3 H7Y A 1 602 701 H7Y H7Y . 
K 2 FAD B 1 601 601 FAD FAD . 
L 3 H7Y B 1 602 701 H7Y H7Y . 
M 2 FAD C 1 601 601 FAD FAD . 
N 3 H7Y C 1 602 701 H7Y H7Y . 
O 2 FAD D 1 601 601 FAD FAD . 
P 3 H7Y D 1 602 701 H7Y H7Y . 
Q 2 FAD E 1 601 601 FAD FAD . 
R 3 H7Y E 1 602 701 H7Y H7Y . 
S 2 FAD F 1 601 601 FAD FAD . 
T 3 H7Y F 1 602 701 H7Y H7Y . 
U 2 FAD G 1 601 601 FAD FAD . 
V 2 FAD H 1 601 601 FAD FAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . O 2 2.637 22.819 94.323 1 43 ? PA FAD 601 D 1 
HETATM 2 O O1A FAD . . . O 2 3.005 21.699 93.401 1 40.68 ? O1A FAD 601 D 1 
HETATM 3 O O2A FAD . . . O 2 1.572 23.751 93.848 1 39.83 ? O2A FAD 601 D 1 
HETATM 4 O O5B FAD . . . O 2 2.198 22.248 95.768 1 40.94 ? O5B FAD 601 D 1 
HETATM 5 C C5B FAD . . . O 2 2.855 21.14 96.44 1 40.63 ? C5B FAD 601 D 1 
HETATM 6 C C4B FAD . . . O 2 1.852 20.359 97.261 1 39.94 ? C4B FAD 601 D 1 
HETATM 7 O O4B FAD . . . O 2 1.337 21.192 98.337 1 39.8 ? O4B FAD 601 D 1 
HETATM 8 C C3B FAD . . . O 2 0.609 19.846 96.52 1 39.12 ? C3B FAD 601 D 1 
HETATM 9 O O3B FAD . . . O 2 0.774 18.537 95.992 1 36.37 ? O3B FAD 601 D 1 
HETATM 10 C C2B FAD . . . O 2 -0.423 19.784 97.648 1 38.88 ? C2B FAD 601 D 1 
HETATM 11 O O2B FAD . . . O 2 -0.277 18.576 98.363 1 40.91 ? O2B FAD 601 D 1 
HETATM 12 C C1B FAD . . . O 2 -0.058 21.016 98.478 1 37.7 ? C1B FAD 601 D 1 
HETATM 13 N N9A FAD . . . O 2 -0.726 22.254 98.043 1 34.18 ? N9A FAD 601 D 1 
HETATM 14 C C8A FAD . . . O 2 -0.222 23.205 97.192 1 33.99 ? C8A FAD 601 D 1 
HETATM 15 N N7A FAD . . . O 2 -1.058 24.191 96.962 1 32.07 ? N7A FAD 601 D 1 
HETATM 16 C C5A FAD . . . O 2 -2.182 23.867 97.702 1 31.92 ? C5A FAD 601 D 1 
HETATM 17 C C6A FAD . . . O 2 -3.418 24.521 97.87 1 31.91 ? C6A FAD 601 D 1 
HETATM 18 N N6A FAD . . . O 2 -3.729 25.672 97.276 1 28.62 ? N6A FAD 601 D 1 
HETATM 19 N N1A FAD . . . O 2 -4.334 23.91 98.666 1 32.38 ? N1A FAD 601 D 1 
HETATM 20 C C2A FAD . . . O 2 -3.999 22.754 99.267 1 33.21 ? C2A FAD 601 D 1 
HETATM 21 N N3A FAD . . . O 2 -2.864 22.054 99.189 1 33.37 ? N3A FAD 601 D 1 
HETATM 22 C C4A FAD . . . O 2 -1.989 22.671 98.372 1 33.16 ? C4A FAD 601 D 1 
HETATM 23 N N1 FAD . . . O 2 11.982 23.16 97.3 1 44.19 ? N1 FAD 601 D 1 
HETATM 24 C C2 FAD . . . O 2 12.244 24.004 98.317 1 42.88 ? C2 FAD 601 D 1 
HETATM 25 O O2 FAD . . . O 2 11.422 24.19 99.202 1 42.52 ? O2 FAD 601 D 1 
HETATM 26 N N3 FAD . . . O 2 13.406 24.705 98.399 1 43.25 ? N3 FAD 601 D 1 
HETATM 27 C C4 FAD . . . O 2 14.402 24.576 97.462 1 44.15 ? C4 FAD 601 D 1 
HETATM 28 O O4 FAD . . . O 2 15.431 25.225 97.588 1 40.39 ? O4 FAD 601 D 1 
HETATM 29 C C4X FAD . . . O 2 14.17 23.687 96.373 1 46.16 ? C4X FAD 601 D 1 
HETATM 30 N N5 FAD . . . O 2 15.097 23.545 95.457 1 46.04 ? N5 FAD 601 D 1 
HETATM 31 C C5X FAD . . . O 2 14.837 22.684 94.42 1 49.88 ? C5X FAD 601 D 1 
HETATM 32 C C6 FAD . . . O 2 15.828 22.525 93.433 1 51.26 ? C6 FAD 601 D 1 
HETATM 33 C C7 FAD . . . O 2 15.664 21.68 92.359 1 48.98 ? C7 FAD 601 D 1 
HETATM 34 C C7M FAD . . . O 2 16.775 21.548 91.348 1 47.69 ? C7M FAD 601 D 1 
HETATM 35 C C8 FAD . . . O 2 14.459 20.939 92.232 1 47.04 ? C8 FAD 601 D 1 
HETATM 36 C C8M FAD . . . O 2 14.253 20.008 91.055 1 46.07 ? C8M FAD 601 D 1 
HETATM 37 C C9 FAD . . . O 2 13.462 21.094 93.194 1 47.43 ? C9 FAD 601 D 1 
HETATM 38 C C9A FAD . . . O 2 13.628 21.958 94.299 1 49.87 ? C9A FAD 601 D 1 
HETATM 39 N N10 FAD . . . O 2 12.657 22.139 95.295 1 49.98 ? N10 FAD 601 D 1 
HETATM 40 C C10 FAD . . . O 2 12.897 23.002 96.365 1 47.36 ? C10 FAD 601 D 1 
HETATM 41 C C1' FAD . . . O 2 11.369 21.411 95.231 1 47.16 ? C1' FAD 601 D 1 
HETATM 42 C C2' FAD . . . O 2 10.302 22.133 94.391 1 45.56 ? C2' FAD 601 D 1 
HETATM 43 O O2' FAD . . . O 2 10.878 22.617 93.175 1 49.19 ? O2' FAD 601 D 1 
HETATM 44 C C3' FAD . . . O 2 9.624 23.312 95.109 1 42.44 ? C3' FAD 601 D 1 
HETATM 45 O O3' FAD . . . O 2 9.29 22.938 96.447 1 38.81 ? O3' FAD 601 D 1 
HETATM 46 C C4' FAD . . . O 2 8.387 23.861 94.379 1 39.49 ? C4' FAD 601 D 1 
HETATM 47 O O4' FAD . . . O 2 8.183 25.239 94.702 1 37.52 ? O4' FAD 601 D 1 
HETATM 48 C C5' FAD . . . O 2 7.104 23.131 94.699 1 38.29 ? C5' FAD 601 D 1 
HETATM 49 O O5' FAD . . . O 2 6.164 23.313 93.604 1 35.65 ? O5' FAD 601 D 1 
HETATM 50 P P FAD . . . O 2 5.014 24.427 93.714 1 39.09 ? P FAD 601 D 1 
HETATM 51 O O1P FAD . . . O 2 4.399 24.673 92.372 1 37.93 ? O1P FAD 601 D 1 
HETATM 52 O O2P FAD . . . O 2 5.543 25.634 94.409 1 35.54 ? O2P FAD 601 D 1 
HETATM 53 O O3P FAD . . . O 2 3.958 23.67 94.664 1 39.45 ? O3P FAD 601 D 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    57 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           53 
#