data_7PBZ # _model_server_result.job_id C6GkCl6QkK5zxyB6Z9s1UA _model_server_result.datetime_utc '2024-12-26 16:11:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":602}' # _entry.id 7PBZ # _exptl.entry_id 7PBZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 142.282 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECANE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PBZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 W N N ? 15 BA N N ? 15 CA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 6 4 3 MAN BMA C1 O1 . O6 HO6 . sing 5 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing 7 ? 7 4 3 MAN BMA C1 O1 . O3 HO3 . sing 8 ? 7 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n G NAG 1 G 1 NAG B 501 NAG 5 n G NAG 2 G 2 NAG B 502 NAG 6 n H NAG 1 H 1 NAG B 503 NAG 6 n H NAG 2 H 2 NAG B 504 NAG 6 n H BMA 3 H 3 BMA B 505 BMA 6 n H MAN 4 H 4 MAN B 506 MAN 5 n I NAG 1 I 1 NAG C 501 NAG 5 n I NAG 2 I 2 NAG C 607 NAG 7 n J NAG 1 J 1 NAG C 602 NAG 7 n J NAG 2 J 2 NAG C 603 NAG 7 n J BMA 3 J 3 BMA C 604 BMA 7 n J MAN 4 J 4 MAN C 605 MAN 7 n J MAN 5 J 5 MAN C 606 MAN 5 n K NAG 1 K 1 NAG E 501 NAG 5 n K NAG 2 K 2 NAG E 607 NAG 7 n L NAG 1 L 1 NAG E 602 NAG 7 n L NAG 2 L 2 NAG E 603 NAG 7 n L BMA 3 L 3 BMA E 604 BMA 7 n L MAN 4 L 4 MAN E 605 MAN 7 n L MAN 5 L 5 MAN E 606 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 409 F CYS 409 1_555 A SG CYS 483 F CYS 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 B SG CYS 138 A CYS 139 1_555 B SG CYS 152 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 C SG CYS 136 B CYS 136 1_555 C SG CYS 150 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 D SG CYS 136 C CYS 136 1_555 D SG CYS 150 C CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 E SG CYS 136 E CYS 136 1_555 E SG CYS 150 E CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 F SG CYS 192 D CYS 139 1_555 F SG CYS 206 D CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 B ND2 ASN 110 A ASN 111 1_555 M C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.702 ? covale ? covale2 C ND2 ASN 80 B ASN 80 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.49 ? covale ? covale3 C ND2 ASN 149 B ASN 149 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.65 ? covale ? covale4 D ND2 ASN 80 C ASN 80 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.654 ? covale ? covale5 D ND2 ASN 149 C ASN 149 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.524 ? covale ? covale6 E ND2 ASN 80 E ASN 80 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.701 ? covale ? covale7 E ND2 ASN 149 E ASN 149 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.506 ? covale ? covale8 F ND2 ASN 164 D ASN 111 1_555 Y C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.67 ? covale ? covale9 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale10 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale11 H O4 NAG . H NAG 2 1_555 H C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale12 H O6 BMA . H BMA 3 1_555 H C1 MAN . H MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale13 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? covale ? covale14 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale15 J O4 NAG . J NAG 2 1_555 J C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale16 J O3 BMA . J BMA 3 1_555 J C1 MAN . J MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale17 J O6 BMA . J BMA 3 1_555 J C1 MAN . J MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale18 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? covale ? covale19 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale20 L O4 NAG . L NAG 2 1_555 L C1 BMA . L BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale21 L O3 BMA . L BMA 3 1_555 L C1 MAN . L MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale22 L O6 BMA . L BMA 3 1_555 L C1 MAN . L MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? metalc ? metalc1 C NE2 HIS 267 B HIS 267 1_555 U ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc2 U ZN ZN . B ZN 503 1_555 D NE2 HIS 267 C HIS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc3 U ZN ZN . B ZN 503 1_555 E NE2 HIS 267 E HIS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? # _chem_comp.formula 'C10 H22' _chem_comp.formula_weight 142.282 _chem_comp.id D10 _chem_comp.mon_nstd_flag . _chem_comp.name DECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D10 sing 122 n n C1 H11 D10 sing 123 n n C1 H12 D10 sing 124 n n C1 H13 D10 sing 125 n n C2 C3 D10 sing 126 n n C2 H21 D10 sing 127 n n C2 H22 D10 sing 128 n n C3 C4 D10 sing 129 n n C3 H31 D10 sing 130 n n C3 H32 D10 sing 131 n n C4 C5 D10 sing 132 n n C4 H41 D10 sing 133 n n C4 H42 D10 sing 134 n n C5 C6 D10 sing 135 n n C5 H51 D10 sing 136 n n C5 H52 D10 sing 137 n n C6 C7 D10 sing 138 n n C6 H61 D10 sing 139 n n C6 H62 D10 sing 140 n n C7 C8 D10 sing 141 n n C7 H71 D10 sing 142 n n C7 H72 D10 sing 143 n n C8 C9 D10 sing 144 n n C8 H81 D10 sing 145 n n C8 H82 D10 sing 146 n n C9 C10 D10 sing 147 n n C9 H91 D10 sing 148 n n C9 H92 D10 sing 149 n n C10 H101 D10 sing 150 n n C10 H102 D10 sing 151 n n C10 H103 D10 sing 152 n n # _atom_sites.entry_id 7PBZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 8 NAG A 1 501 501 NAG NAG . N 9 UND A 1 502 572 UND UND . O 10 OCT A 1 503 672 OCT OCT . P 9 UND A 1 504 772 UND UND . Q 10 OCT A 1 505 872 OCT OCT . R 11 HEX A 1 506 601 HEX HEX . S 12 ABU B 1 501 507 ABU ABU . T 11 HEX B 1 502 601 HEX HEX . U 13 ZN B 1 503 1 ZN ZN . V 14 HSM C 1 601 601 HSM HSM . W 15 D10 C 1 602 773 D10 D10 . X 12 ABU E 1 501 507 ABU ABU . Y 8 NAG D 1 501 501 NAG NAG . Z 11 HEX D 1 502 572 HEX HEX . AA 11 HEX D 1 503 772 HEX HEX . BA 15 D10 D 1 504 774 D10 D10 . CA 15 D10 D 1 505 775 D10 D10 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D10 . . . W 15 186.977 158.788 200.223 1 114.65 ? C1 D10 602 C 1 HETATM 2 C C2 D10 . . . W 15 187.826 159.784 201.01 1 114.65 ? C2 D10 602 C 1 HETATM 3 C C3 D10 . . . W 15 187.444 159.728 202.487 1 114.65 ? C3 D10 602 C 1 HETATM 4 C C4 D10 . . . W 15 188.47 160.51 203.306 1 114.65 ? C4 D10 602 C 1 HETATM 5 C C5 D10 . . . W 15 188.13 160.42 204.792 1 114.65 ? C5 D10 602 C 1 HETATM 6 C C6 D10 . . . W 15 189.386 160.659 205.629 1 114.65 ? C6 D10 602 C 1 HETATM 7 C C7 D10 . . . W 15 189.991 159.317 206.033 1 114.65 ? C7 D10 602 C 1 HETATM 8 C C8 D10 . . . W 15 191.265 159.542 206.842 1 114.65 ? C8 D10 602 C 1 HETATM 9 C C9 D10 . . . W 15 191.906 158.192 207.157 1 114.65 ? C9 D10 602 C 1 HETATM 10 C C10 D10 . . . W 15 192.981 158.37 208.227 1 114.65 ? C10 D10 602 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 10 #